data_2VWB # _model_server_result.job_id PtPDvW8BUHYyC2shNYeX0w _model_server_result.datetime_utc '2024-11-04 22:52:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vwb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1531}' # _entry.id 2VWB # _exptl.entry_id 2VWB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2VWB _cell.length_a 147.418 _cell.length_b 148.948 _cell.length_c 65.118 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VWB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2VWB _atom_sites.fract_transf_matrix[1][1] 0.006783 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006714 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 1531 1531 ANP ANP . D 2 ANP B 1 1533 1533 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 2 -21.096 62.329 -1.604 1 74.78 ? PG ANP 1531 A 1 HETATM 2 O O1G ANP . . . C 2 -21.475 63.325 -2.667 1 74.14 ? O1G ANP 1531 A 1 HETATM 3 O O2G ANP . . . C 2 -22.218 62 -0.622 1 73.48 ? O2G ANP 1531 A 1 HETATM 4 O O3G ANP . . . C 2 -20.4 61.167 -2.284 1 74.34 ? O3G ANP 1531 A 1 HETATM 5 P PB ANP . . . C 2 -19.421 62.415 0.984 1 68.76 ? PB ANP 1531 A 1 HETATM 6 O O1B ANP . . . C 2 -18.77 63.502 1.81 1 68.6 ? O1B ANP 1531 A 1 HETATM 7 O O2B ANP . . . C 2 -20.61 61.67 1.568 1 67.86 ? O2B ANP 1531 A 1 HETATM 8 N N3B ANP . . . C 2 -19.866 63.079 -0.585 1 71.16 ? N3B ANP 1531 A 1 HETATM 9 P PA ANP . . . C 2 -17.245 61.503 -0.557 1 61.8 ? PA ANP 1531 A 1 HETATM 10 O O1A ANP . . . C 2 -16.433 62.755 -0.353 1 62.07 ? O1A ANP 1531 A 1 HETATM 11 O O2A ANP . . . C 2 -17.945 61.293 -1.884 1 61.12 ? O2A ANP 1531 A 1 HETATM 12 O O3A ANP . . . C 2 -18.268 61.335 0.684 1 65.27 ? O3A ANP 1531 A 1 HETATM 13 O O5' ANP . . . C 2 -16.266 60.274 -0.247 1 57.31 ? O5' ANP 1531 A 1 HETATM 14 C C5' ANP . . . C 2 -15.782 60.147 1.081 1 52.35 ? C5' ANP 1531 A 1 HETATM 15 C C4' ANP . . . C 2 -16.131 58.78 1.636 1 47.83 ? C4' ANP 1531 A 1 HETATM 16 O O4' ANP . . . C 2 -15.506 57.802 0.808 1 45.89 ? O4' ANP 1531 A 1 HETATM 17 C C3' ANP . . . C 2 -15.583 58.626 3.045 1 45.96 ? C3' ANP 1531 A 1 HETATM 18 O O3' ANP . . . C 2 -16.593 58.088 3.909 1 43.77 ? O3' ANP 1531 A 1 HETATM 19 C C2' ANP . . . C 2 -14.414 57.67 2.874 1 45.33 ? C2' ANP 1531 A 1 HETATM 20 O O2' ANP . . . C 2 -14.242 56.812 4.011 1 45.09 ? O2' ANP 1531 A 1 HETATM 21 C C1' ANP . . . C 2 -14.741 56.896 1.597 1 45.31 ? C1' ANP 1531 A 1 HETATM 22 N N9 ANP . . . C 2 -13.503 56.406 0.913 1 45.16 ? N9 ANP 1531 A 1 HETATM 23 C C8 ANP . . . C 2 -12.55 57.168 0.337 1 45.37 ? C8 ANP 1531 A 1 HETATM 24 N N7 ANP . . . C 2 -11.54 56.413 -0.183 1 45.07 ? N7 ANP 1531 A 1 HETATM 25 C C5 ANP . . . C 2 -11.845 55.132 0.066 1 44.36 ? C5 ANP 1531 A 1 HETATM 26 C C6 ANP . . . C 2 -11.21 53.825 -0.207 1 45 ? C6 ANP 1531 A 1 HETATM 27 N N6 ANP . . . C 2 -10.031 53.777 -0.862 1 45.17 ? N6 ANP 1531 A 1 HETATM 28 N N1 ANP . . . C 2 -11.843 52.699 0.214 1 45.06 ? N1 ANP 1531 A 1 HETATM 29 C C2 ANP . . . C 2 -13.027 52.77 0.857 1 44.79 ? C2 ANP 1531 A 1 HETATM 30 N N3 ANP . . . C 2 -13.654 53.931 1.134 1 44.37 ? N3 ANP 1531 A 1 HETATM 31 C C4 ANP . . . C 2 -13.13 55.127 0.78 1 44.22 ? C4 ANP 1531 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #