data_2VWB # _model_server_result.job_id fGtKQG2dQk_XEooFGIX6xQ _model_server_result.datetime_utc '2024-11-04 22:50:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vwb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1533}' # _entry.id 2VWB # _exptl.entry_id 2VWB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2VWB _cell.length_a 147.418 _cell.length_b 148.948 _cell.length_c 65.118 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VWB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2VWB _atom_sites.fract_transf_matrix[1][1] 0.006783 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006714 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 1531 1531 ANP ANP . D 2 ANP B 1 1533 1533 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 2 -8.369 21.484 -37.149 1 87.32 ? PG ANP 1533 B 1 HETATM 2 O O1G ANP . . . D 2 -9.182 21.622 -35.888 1 87.08 ? O1G ANP 1533 B 1 HETATM 3 O O2G ANP . . . D 2 -7.875 22.838 -37.633 1 87.18 ? O2G ANP 1533 B 1 HETATM 4 O O3G ANP . . . D 2 -7.351 20.374 -37.01 1 86.47 ? O3G ANP 1533 B 1 HETATM 5 P PB ANP . . . D 2 -9.045 21.006 -40.138 1 82.62 ? PB ANP 1533 B 1 HETATM 6 O O1B ANP . . . D 2 -10.192 20.465 -40.97 1 82.19 ? O1B ANP 1533 B 1 HETATM 7 O O2B ANP . . . D 2 -8.585 22.421 -40.439 1 82.32 ? O2B ANP 1533 B 1 HETATM 8 N N3B ANP . . . D 2 -9.45 20.912 -38.425 1 84.83 ? N3B ANP 1533 B 1 HETATM 9 P PA ANP . . . D 2 -7.77 18.471 -39.796 1 77.17 ? PA ANP 1533 B 1 HETATM 10 O O1A ANP . . . D 2 -9.058 17.784 -40.178 1 77.1 ? O1A ANP 1533 B 1 HETATM 11 O O2A ANP . . . D 2 -7.256 18.365 -38.375 1 76.11 ? O2A ANP 1533 B 1 HETATM 12 O O3A ANP . . . D 2 -7.784 20.013 -40.313 1 79.82 ? O3A ANP 1533 B 1 HETATM 13 O O5' ANP . . . D 2 -6.673 17.896 -40.805 1 74.07 ? O5' ANP 1533 B 1 HETATM 14 C C5' ANP . . . D 2 -6.704 18.417 -42.122 1 70.45 ? C5' ANP 1533 B 1 HETATM 15 C C4' ANP . . . D 2 -5.317 18.363 -42.708 1 68.09 ? C4' ANP 1533 B 1 HETATM 16 O O4' ANP . . . D 2 -4.613 17.215 -42.231 1 67.59 ? O4' ANP 1533 B 1 HETATM 17 C C3' ANP . . . D 2 -5.426 18.214 -44.215 1 67.34 ? C3' ANP 1533 B 1 HETATM 18 O O3' ANP . . . D 2 -4.833 19.365 -44.807 1 66.05 ? O3' ANP 1533 B 1 HETATM 19 C C2' ANP . . . D 2 -4.667 16.942 -44.545 1 67.35 ? C2' ANP 1533 B 1 HETATM 20 O O2' ANP . . . D 2 -3.893 17.07 -45.738 1 66.15 ? O2' ANP 1533 B 1 HETATM 21 C C1' ANP . . . D 2 -3.787 16.791 -43.317 1 68.97 ? C1' ANP 1533 B 1 HETATM 22 N N9 ANP . . . D 2 -3.202 15.44 -43.135 1 69.5 ? N9 ANP 1533 B 1 HETATM 23 C C8 ANP . . . D 2 -3.845 14.335 -42.728 1 70.08 ? C8 ANP 1533 B 1 HETATM 24 N N7 ANP . . . D 2 -3.004 13.268 -42.659 1 70.03 ? N7 ANP 1533 B 1 HETATM 25 C C5 ANP . . . D 2 -1.782 13.692 -43.028 1 70.02 ? C5 ANP 1533 B 1 HETATM 26 C C6 ANP . . . D 2 -0.437 13.081 -43.185 1 69.59 ? C6 ANP 1533 B 1 HETATM 27 N N6 ANP . . . D 2 -0.235 11.77 -42.917 1 70.27 ? N6 ANP 1533 B 1 HETATM 28 N N1 ANP . . . D 2 0.577 13.869 -43.605 1 69.51 ? N1 ANP 1533 B 1 HETATM 29 C C2 ANP . . . D 2 0.393 15.177 -43.868 1 69.95 ? C2 ANP 1533 B 1 HETATM 30 N N3 ANP . . . D 2 -0.798 15.803 -43.749 1 70.5 ? N3 ANP 1533 B 1 HETATM 31 C C4 ANP . . . D 2 -1.913 15.127 -43.343 1 70.31 ? C4 ANP 1533 B 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #