data_2VXK # _model_server_result.job_id '_Q_WjueCnjq7ss6FFXtWDg' _model_server_result.datetime_utc '2024-11-05 00:38:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vxk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1193}' # _entry.id 2VXK # _exptl.entry_id 2VXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2VXK _cell.length_a 70.606 _cell.length_b 100.826 _cell.length_c 55.35 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_454 -x-1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -70.606 0 -27.675 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 105 n y N1A C6A COA doub 106 n y C2A N3A COA doub 107 n y C2A H2A COA sing 108 n n N3A C4A COA sing 109 n y C4A C5A COA doub 110 n y C4A N9A COA sing 111 n y C5A C6A COA sing 112 n y C5A N7A COA sing 113 n y C6A N6A COA sing 114 n n N6A H61A COA sing 115 n n N6A H62A COA sing 116 n n N7A C8A COA doub 117 n y C8A N9A COA sing 118 n y C8A H8A COA sing 119 n n N9A C1B COA sing 120 n n C1B C2B COA sing 121 n n C1B O4B COA sing 122 n n C1B H1B COA sing 123 n n C2B O2B COA sing 124 n n C2B C3B COA sing 125 n n C2B H2B COA sing 126 n n O2B HO2A COA sing 127 n n C3B O3B COA sing 128 n n C3B C4B COA sing 129 n n C3B H3B COA sing 130 n n O3B P3B COA sing 131 n n P3B O7A COA doub 132 n n P3B O8A COA sing 133 n n P3B O9A COA sing 134 n n O8A HOA8 COA sing 135 n n O9A HOA9 COA sing 136 n n C4B O4B COA sing 137 n n C4B C5B COA sing 138 n n C4B H4B COA sing 139 n n C5B O5B COA sing 140 n n C5B H51A COA sing 141 n n C5B H52A COA sing 142 n n O5B P1A COA sing 143 n n P1A O1A COA doub 144 n n P1A O2A COA sing 145 n n P1A O3A COA sing 146 n n O2A HOA2 COA sing 147 n n O3A P2A COA sing 148 n n P2A O4A COA doub 149 n n P2A O5A COA sing 150 n n P2A O6A COA sing 151 n n O5A HOA5 COA sing 152 n n O6A CCP COA sing 153 n n CBP CCP COA sing 154 n n CBP CDP COA sing 155 n n CBP CEP COA sing 156 n n CBP CAP COA sing 157 n n CCP H121 COA sing 158 n n CCP H122 COA sing 159 n n CDP H131 COA sing 160 n n CDP H132 COA sing 161 n n CDP H133 COA sing 162 n n CEP H141 COA sing 163 n n CEP H142 COA sing 164 n n CEP H143 COA sing 165 n n CAP OAP COA sing 166 n n CAP C9P COA sing 167 n n CAP H10 COA sing 168 n n OAP HO1 COA sing 169 n n C9P O9P COA doub 170 n n C9P N8P COA sing 171 n n N8P C7P COA sing 172 n n N8P HN8 COA sing 173 n n C7P C6P COA sing 174 n n C7P H71 COA sing 175 n n C7P H72 COA sing 176 n n C6P C5P COA sing 177 n n C6P H61 COA sing 178 n n C6P H62 COA sing 179 n n C5P O5P COA doub 180 n n C5P N4P COA sing 181 n n N4P C3P COA sing 182 n n N4P HN4 COA sing 183 n n C3P C2P COA sing 184 n n C3P H31 COA sing 185 n n C3P H32 COA sing 186 n n C2P S1P COA sing 187 n n C2P H21 COA sing 188 n n C2P H22 COA sing 189 n n S1P HS1 COA sing 190 n n # _atom_sites.entry_id 2VXK _atom_sites.fract_transf_matrix[1][1] 0.014163 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009918 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018067 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 16G A 1 1191 1191 16G 16G . C 3 PO4 A 1 1192 1192 PO4 PO4 . D 4 COA A 1 1193 1193 COA COA . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . E 5 HOH A 45 2045 2045 HOH HOH . E 5 HOH A 46 2046 2046 HOH HOH . E 5 HOH A 47 2047 2047 HOH HOH . E 5 HOH A 48 2048 2048 HOH HOH . E 5 HOH A 49 2049 2049 HOH HOH . E 5 HOH A 50 2050 2050 HOH HOH . E 5 HOH A 51 2051 2051 HOH HOH . E 5 HOH A 52 2052 2052 HOH HOH . E 5 HOH A 53 2053 2053 HOH HOH . E 5 HOH A 54 2054 2054 HOH HOH . E 5 HOH A 55 2055 2055 HOH HOH . E 5 HOH A 56 2056 2056 HOH HOH . E 5 HOH A 57 2057 2057 HOH HOH . E 5 HOH A 58 2058 2058 HOH HOH . E 5 HOH A 59 2059 2059 HOH HOH . E 5 HOH A 60 2060 2060 HOH HOH . E 5 HOH A 61 2061 2061 HOH HOH . E 5 HOH A 62 2062 2062 HOH HOH . E 5 HOH A 63 2063 2063 HOH HOH . E 5 HOH A 64 2064 2064 HOH HOH . E 5 HOH A 65 2065 2065 HOH HOH . E 5 HOH A 66 2066 2066 HOH HOH . E 5 HOH A 67 2067 2067 HOH HOH . E 5 HOH A 68 2068 2068 HOH HOH . E 5 HOH A 69 2069 2069 HOH HOH . E 5 HOH A 70 2070 2070 HOH HOH . E 5 HOH A 71 2071 2071 HOH HOH . E 5 HOH A 72 2072 2072 HOH HOH . E 5 HOH A 73 2073 2073 HOH HOH . E 5 HOH A 74 2074 2074 HOH HOH . E 5 HOH A 75 2075 2075 HOH HOH . E 5 HOH A 76 2076 2076 HOH HOH . E 5 HOH A 77 2077 2077 HOH HOH . E 5 HOH A 78 2078 2078 HOH HOH . E 5 HOH A 79 2079 2079 HOH HOH . E 5 HOH A 80 2080 2080 HOH HOH . E 5 HOH A 81 2081 2081 HOH HOH . E 5 HOH A 82 2082 2082 HOH HOH . E 5 HOH A 83 2083 2083 HOH HOH . E 5 HOH A 84 2084 2084 HOH HOH . E 5 HOH A 85 2085 2085 HOH HOH . E 5 HOH A 86 2086 2086 HOH HOH . E 5 HOH A 87 2087 2087 HOH HOH . E 5 HOH A 88 2088 2088 HOH HOH . E 5 HOH A 89 2089 2089 HOH HOH . E 5 HOH A 90 2090 2090 HOH HOH . E 5 HOH A 91 2091 2091 HOH HOH . E 5 HOH A 92 2092 2092 HOH HOH . E 5 HOH A 93 2093 2093 HOH HOH . E 5 HOH A 94 2094 2094 HOH HOH . E 5 HOH A 95 2095 2095 HOH HOH . E 5 HOH A 96 2096 2096 HOH HOH . E 5 HOH A 97 2097 2097 HOH HOH . E 5 HOH A 98 2098 2098 HOH HOH . E 5 HOH A 99 2099 2099 HOH HOH . E 5 HOH A 100 2100 2100 HOH HOH . E 5 HOH A 101 2101 2101 HOH HOH . E 5 HOH A 102 2102 2102 HOH HOH . E 5 HOH A 103 2103 2103 HOH HOH . E 5 HOH A 104 2104 2104 HOH HOH . E 5 HOH A 105 2105 2105 HOH HOH . E 5 HOH A 106 2106 2106 HOH HOH . E 5 HOH A 107 2107 2107 HOH HOH . E 5 HOH A 108 2108 2108 HOH HOH . E 5 HOH A 109 2109 2109 HOH HOH . E 5 HOH A 110 2110 2110 HOH HOH . E 5 HOH A 111 2111 2111 HOH HOH . E 5 HOH A 112 2112 2112 HOH HOH . E 5 HOH A 113 2113 2113 HOH HOH . E 5 HOH A 114 2114 2114 HOH HOH . E 5 HOH A 115 2115 2115 HOH HOH . E 5 HOH A 116 2116 2116 HOH HOH . E 5 HOH A 117 2117 2117 HOH HOH . E 5 HOH A 118 2118 2118 HOH HOH . E 5 HOH A 119 2119 2119 HOH HOH . E 5 HOH A 120 2120 2120 HOH HOH . E 5 HOH A 121 2121 2121 HOH HOH . E 5 HOH A 122 2122 2122 HOH HOH . E 5 HOH A 123 2123 2123 HOH HOH . E 5 HOH A 124 2124 2124 HOH HOH . E 5 HOH A 125 2125 2125 HOH HOH . E 5 HOH A 126 2126 2126 HOH HOH . E 5 HOH A 127 2127 2127 HOH HOH . E 5 HOH A 128 2128 2128 HOH HOH . E 5 HOH A 129 2129 2129 HOH HOH . E 5 HOH A 130 2130 2130 HOH HOH . E 5 HOH A 131 2131 2131 HOH HOH . E 5 HOH A 132 2132 2132 HOH HOH . E 5 HOH A 133 2133 2133 HOH HOH . E 5 HOH A 134 2134 2134 HOH HOH . E 5 HOH A 135 2135 2135 HOH HOH . E 5 HOH A 136 2136 2136 HOH HOH . E 5 HOH A 137 2137 2137 HOH HOH . E 5 HOH A 138 2138 2138 HOH HOH . E 5 HOH A 139 2139 2139 HOH HOH . E 5 HOH A 140 2140 2140 HOH HOH . E 5 HOH A 141 2141 2141 HOH HOH . E 5 HOH A 142 2142 2142 HOH HOH . E 5 HOH A 143 2143 2143 HOH HOH . E 5 HOH A 144 2144 2144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . D 4 -25.138 0.225 -2.167 1 3.85 ? N1A COA 1193 A 1 HETATM 2 C C2A COA . . . D 4 -23.941 0.69 -2.541 1 7.24 ? C2A COA 1193 A 1 HETATM 3 N N3A COA . . . D 4 -22.835 -0.002 -2.237 1 5.77 ? N3A COA 1193 A 1 HETATM 4 C C4A COA . . . D 4 -22.909 -1.17 -1.518 1 5.08 ? C4A COA 1193 A 1 HETATM 5 C C5A COA . . . D 4 -24.153 -1.649 -1.103 1 4.56 ? C5A COA 1193 A 1 HETATM 6 C C6A COA . . . D 4 -25.285 -0.906 -1.428 1 5.58 ? C6A COA 1193 A 1 HETATM 7 N N6A COA . . . D 4 -26.52 -1.34 -1.063 1 5.07 ? N6A COA 1193 A 1 HETATM 8 N N7A COA . . . D 4 -23.962 -2.782 -0.412 1 5.11 ? N7A COA 1193 A 1 HETATM 9 C C8A COA . . . D 4 -22.636 -3.031 -0.405 1 7.14 ? C8A COA 1193 A 1 HETATM 10 N N9A COA . . . D 4 -22.002 -2.041 -1.079 1 5.69 ? N9A COA 1193 A 1 HETATM 11 C C1B COA . . . D 4 -20.504 -1.931 -1.338 1 5.78 ? C1B COA 1193 A 1 HETATM 12 C C2B COA . . . D 4 -19.549 -2.335 -0.223 1 5.57 ? C2B COA 1193 A 1 HETATM 13 O O2B COA . . . D 4 -19.359 -1.279 0.688 1 6.31 ? O2B COA 1193 A 1 HETATM 14 C C3B COA . . . D 4 -18.29 -2.601 -1.065 1 8.31 ? C3B COA 1193 A 1 HETATM 15 O O3B COA . . . D 4 -17.792 -1.393 -1.607 1 7.87 ? O3B COA 1193 A 1 HETATM 16 P P3B COA . . . D 4 -16.178 -1.189 -1.818 1 13.97 ? P3B COA 1193 A 1 HETATM 17 O O7A COA . . . D 4 -15.969 0.337 -2.016 1 13.46 ? O7A COA 1193 A 1 HETATM 18 O O8A COA . . . D 4 -15.647 -1.662 -0.406 1 13.75 ? O8A COA 1193 A 1 HETATM 19 O O9A COA . . . D 4 -15.704 -2.052 -2.935 1 16.26 ? O9A COA 1193 A 1 HETATM 20 C C4B COA . . . D 4 -18.84 -3.379 -2.285 1 7.58 ? C4B COA 1193 A 1 HETATM 21 O O4B COA . . . D 4 -20.24 -2.874 -2.48 1 6.18 ? O4B COA 1193 A 1 HETATM 22 C C5B COA . . . D 4 -18.909 -4.896 -2.168 1 8.68 ? C5B COA 1193 A 1 HETATM 23 O O5B COA . . . D 4 -19.835 -5.181 -1.111 1 9.14 ? O5B COA 1193 A 1 HETATM 24 P P1A COA . . . D 4 -19.621 -6.323 -0.011 1 9.79 ? P1A COA 1193 A 1 HETATM 25 O O1A COA . . . D 4 -18.707 -5.896 1.029 1 10.15 ? O1A COA 1193 A 1 HETATM 26 O O2A COA . . . D 4 -19.324 -7.568 -0.755 1 10.22 ? O2A COA 1193 A 1 HETATM 27 O O3A COA . . . D 4 -21.124 -6.392 0.48 1 9.39 ? O3A COA 1193 A 1 HETATM 28 P P2A COA . . . D 4 -21.857 -7.389 1.52 1 11.87 ? P2A COA 1193 A 1 HETATM 29 O O4A COA . . . D 4 -22.364 -6.569 2.616 1 10.53 ? O4A COA 1193 A 1 HETATM 30 O O5A COA . . . D 4 -20.918 -8.519 1.809 1 10.08 ? O5A COA 1193 A 1 HETATM 31 O O6A COA . . . D 4 -23.018 -7.923 0.592 1 11.09 ? O6A COA 1193 A 1 HETATM 32 C CBP COA . . . D 4 -25.373 -7.539 0.242 1 12.5 ? CBP COA 1193 A 1 HETATM 33 C CCP COA . . . D 4 -23.96 -7.101 -0.106 1 11.03 ? CCP COA 1193 A 1 HETATM 34 C CDP COA . . . D 4 -26.355 -6.596 -0.495 1 13.89 ? CDP COA 1193 A 1 HETATM 35 C CEP COA . . . D 4 -25.6 -8.976 -0.264 1 11.67 ? CEP COA 1193 A 1 HETATM 36 C CAP COA . . . D 4 -25.551 -7.532 1.803 1 12.01 ? CAP COA 1193 A 1 HETATM 37 O OAP COA . . . D 4 -25.258 -6.237 2.346 1 12.42 ? OAP COA 1193 A 1 HETATM 38 C C9P COA . . . D 4 -26.976 -7.926 2.208 1 12.99 ? C9P COA 1193 A 1 HETATM 39 O O9P COA . . . D 4 -27.337 -9.106 2.25 1 8.6 ? O9P COA 1193 A 1 HETATM 40 N N8P COA . . . D 4 -27.758 -6.881 2.499 1 16.5 ? N8P COA 1193 A 1 HETATM 41 C C7P COA . . . D 4 -29.168 -7.095 2.869 1 18.15 ? C7P COA 1193 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 41 #