data_2VXM # _model_server_result.job_id ol2i7CSOp9tlUAuG-gKSDg _model_server_result.datetime_utc '2024-12-13 12:53:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vxm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1339}' # _entry.id 2VXM # _exptl.entry_id 2VXM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.4 _cell.angle_gamma 90 _cell.entry_id 2VXM _cell.length_a 130.72 _cell.length_b 65.3 _cell.length_c 163.69 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VXM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 PQS monomeric 1 author_and_software_defined_assembly 3 PQS monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,H 1 1 B,E,F,I 2 1 C,G,J 3 1 D,K 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 250 n n C1 H11 MPD sing 251 n n C1 H12 MPD sing 252 n n C1 H13 MPD sing 253 n n C2 O2 MPD sing 254 n n C2 CM MPD sing 255 n n C2 C3 MPD sing 256 n n O2 HO2 MPD sing 257 n n CM HM1 MPD sing 258 n n CM HM2 MPD sing 259 n n CM HM3 MPD sing 260 n n C3 C4 MPD sing 261 n n C3 H31 MPD sing 262 n n C3 H32 MPD sing 263 n n C4 O4 MPD sing 264 n n C4 C5 MPD sing 265 n n C4 H4 MPD sing 266 n n O4 HO4 MPD sing 267 n n C5 H51 MPD sing 268 n n C5 H52 MPD sing 269 n n C5 H53 MPD sing 270 n n # _atom_sites.entry_id 2VXM _atom_sites.fract_transf_matrix[1][1] 0.00765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002107 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006337 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MPD B 1 1339 1339 MPD MPD . F 3 GOL B 1 1340 1340 GOL GOL . G 3 GOL C 1 1340 1340 GOL GOL . H 4 HOH A 1 2001 2001 HOH HOH . H 4 HOH A 2 2002 2002 HOH HOH . H 4 HOH A 3 2003 2003 HOH HOH . H 4 HOH A 4 2004 2004 HOH HOH . H 4 HOH A 5 2005 2005 HOH HOH . H 4 HOH A 6 2006 2006 HOH HOH . H 4 HOH A 7 2007 2007 HOH HOH . H 4 HOH A 8 2008 2008 HOH HOH . H 4 HOH A 9 2009 2009 HOH HOH . H 4 HOH A 10 2010 2010 HOH HOH . H 4 HOH A 11 2011 2011 HOH HOH . H 4 HOH A 12 2012 2012 HOH HOH . H 4 HOH A 13 2013 2013 HOH HOH . H 4 HOH A 14 2014 2014 HOH HOH . H 4 HOH A 15 2015 2015 HOH HOH . H 4 HOH A 16 2016 2016 HOH HOH . H 4 HOH A 17 2017 2017 HOH HOH . H 4 HOH A 18 2018 2018 HOH HOH . H 4 HOH A 19 2019 2019 HOH HOH . H 4 HOH A 20 2020 2020 HOH HOH . H 4 HOH A 21 2021 2021 HOH HOH . H 4 HOH A 22 2022 2022 HOH HOH . H 4 HOH A 23 2023 2023 HOH HOH . H 4 HOH A 24 2024 2024 HOH HOH . H 4 HOH A 25 2025 2025 HOH HOH . H 4 HOH A 26 2026 2026 HOH HOH . H 4 HOH A 27 2027 2027 HOH HOH . H 4 HOH A 28 2028 2028 HOH HOH . H 4 HOH A 29 2029 2029 HOH HOH . H 4 HOH A 30 2030 2030 HOH HOH . H 4 HOH A 31 2031 2031 HOH HOH . H 4 HOH A 32 2032 2032 HOH HOH . H 4 HOH A 33 2033 2033 HOH HOH . I 4 HOH B 1 2001 2001 HOH HOH . I 4 HOH B 2 2002 2002 HOH HOH . I 4 HOH B 3 2003 2003 HOH HOH . I 4 HOH B 4 2004 2004 HOH HOH . I 4 HOH B 5 2005 2005 HOH HOH . I 4 HOH B 6 2006 2006 HOH HOH . I 4 HOH B 7 2007 2007 HOH HOH . I 4 HOH B 8 2008 2008 HOH HOH . I 4 HOH B 9 2009 2009 HOH HOH . I 4 HOH B 10 2010 2010 HOH HOH . I 4 HOH B 11 2011 2011 HOH HOH . I 4 HOH B 12 2012 2012 HOH HOH . I 4 HOH B 13 2013 2013 HOH HOH . I 4 HOH B 14 2014 2014 HOH HOH . I 4 HOH B 15 2015 2015 HOH HOH . I 4 HOH B 16 2016 2016 HOH HOH . I 4 HOH B 17 2017 2017 HOH HOH . I 4 HOH B 18 2018 2018 HOH HOH . I 4 HOH B 19 2019 2019 HOH HOH . I 4 HOH B 20 2020 2020 HOH HOH . I 4 HOH B 21 2021 2021 HOH HOH . I 4 HOH B 22 2022 2022 HOH HOH . I 4 HOH B 23 2023 2023 HOH HOH . I 4 HOH B 24 2024 2024 HOH HOH . I 4 HOH B 25 2025 2025 HOH HOH . I 4 HOH B 26 2026 2026 HOH HOH . J 4 HOH C 1 2001 2001 HOH HOH . J 4 HOH C 2 2002 2002 HOH HOH . J 4 HOH C 3 2003 2003 HOH HOH . J 4 HOH C 4 2004 2004 HOH HOH . J 4 HOH C 5 2005 2005 HOH HOH . J 4 HOH C 6 2006 2006 HOH HOH . J 4 HOH C 7 2007 2007 HOH HOH . J 4 HOH C 8 2008 2008 HOH HOH . J 4 HOH C 9 2009 2009 HOH HOH . J 4 HOH C 10 2010 2010 HOH HOH . J 4 HOH C 11 2011 2011 HOH HOH . J 4 HOH C 12 2012 2012 HOH HOH . J 4 HOH C 13 2013 2013 HOH HOH . J 4 HOH C 14 2014 2014 HOH HOH . J 4 HOH C 15 2015 2015 HOH HOH . J 4 HOH C 16 2016 2016 HOH HOH . J 4 HOH C 17 2017 2017 HOH HOH . K 4 HOH D 1 2001 2001 HOH HOH . K 4 HOH D 2 2002 2002 HOH HOH . K 4 HOH D 3 2003 2003 HOH HOH . K 4 HOH D 4 2004 2004 HOH HOH . K 4 HOH D 5 2005 2005 HOH HOH . K 4 HOH D 6 2006 2006 HOH HOH . K 4 HOH D 7 2007 2007 HOH HOH . K 4 HOH D 8 2008 2008 HOH HOH . K 4 HOH D 9 2009 2009 HOH HOH . K 4 HOH D 10 2010 2010 HOH HOH . K 4 HOH D 11 2011 2011 HOH HOH . K 4 HOH D 12 2012 2012 HOH HOH . K 4 HOH D 13 2013 2013 HOH HOH . K 4 HOH D 14 2014 2014 HOH HOH . K 4 HOH D 15 2015 2015 HOH HOH . K 4 HOH D 16 2016 2016 HOH HOH . K 4 HOH D 17 2017 2017 HOH HOH . K 4 HOH D 18 2018 2018 HOH HOH . K 4 HOH D 19 2019 2019 HOH HOH . K 4 HOH D 20 2020 2020 HOH HOH . K 4 HOH D 21 2021 2021 HOH HOH . K 4 HOH D 22 2022 2022 HOH HOH . K 4 HOH D 23 2023 2023 HOH HOH . K 4 HOH D 24 2024 2024 HOH HOH . K 4 HOH D 25 2025 2025 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . E 2 -48.131 7.994 22.03 1 44.57 ? C1 MPD 1339 B 1 HETATM 2 C C2 MPD . . . E 2 -47.657 7.973 20.566 1 44.7 ? C2 MPD 1339 B 1 HETATM 3 O O2 MPD . . . E 2 -46.263 8.241 20.504 1 42.95 ? O2 MPD 1339 B 1 HETATM 4 C CM MPD . . . E 2 -47.934 6.586 19.98 1 43.16 ? CM MPD 1339 B 1 HETATM 5 C C3 MPD . . . E 2 -48.436 9.04 19.738 1 45.07 ? C3 MPD 1339 B 1 HETATM 6 C C4 MPD . . . E 2 -48.228 10.509 20.212 1 45.1 ? C4 MPD 1339 B 1 HETATM 7 O O4 MPD . . . E 2 -46.848 10.88 20.109 1 43.92 ? O4 MPD 1339 B 1 HETATM 8 C C5 MPD . . . E 2 -49.049 11.455 19.34 1 42.87 ? C5 MPD 1339 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 395 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #