data_2VXO
#
_model_server_result.job_id            YvXRVuLE1QWuvQOc56OoPQ 
_model_server_result.datetime_utc      '2024-10-10 15:18:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2vxo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1694}' 
#
_entry.id    2VXO 
#
_exptl.entry_id    2VXO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              365.213 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "XANTHOSINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2VXO 
_cell.length_a            98.52 
_cell.length_b            123.42 
_cell.length_c            127.96 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2VXO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
_chem_comp.formula           'C10 H14 N4 O9 P 1' 
_chem_comp.formula_weight    365.213 
_chem_comp.id                XMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "XANTHOSINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '5-MONOPHOSPHATE-9-BETA-D-RIBOFURANOSYL XANTHINE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P XMP sing 380 n n 
P O2P XMP sing 381 n n 
P O5' XMP sing 382 n n 
P O3P XMP doub 383 n n 
O1P HOP1 XMP sing 384 n n 
O2P HOP2 XMP sing 385 n n 
O5' C5' XMP sing 386 n n 
C5' C4' XMP sing 387 n n 
C5' "H5'2" XMP sing 388 n n 
C5' "H5'1" XMP sing 389 n n 
C4' O4' XMP sing 390 n n 
C4' C3' XMP sing 391 n n 
C4' H4' XMP sing 392 n n 
O4' C1' XMP sing 393 n n 
C1' N9 XMP sing 394 n n 
C1' C2' XMP sing 395 n n 
C1' H1' XMP sing 396 n n 
N9 C4 XMP sing 397 n y 
N9 C8 XMP sing 398 n y 
C4 N3 XMP sing 399 n n 
C4 C5 XMP doub 400 n y 
N3 C2 XMP sing 401 n n 
N3 H3 XMP sing 402 n n 
N1 C2 XMP sing 403 n n 
N1 C6 XMP sing 404 n n 
N1 H1 XMP sing 405 n n 
C2 O2 XMP doub 406 n n 
C6 O6 XMP doub 407 n n 
C6 C5 XMP sing 408 n n 
C5 N7 XMP sing 409 n y 
N7 C8 XMP doub 410 n y 
N7 H7 XMP sing 411 n n 
C8 H8 XMP sing 412 n n 
C2' O2' XMP sing 413 n n 
C2' C3' XMP sing 414 n n 
C2' H2' XMP sing 415 n n 
O2' H2O1 XMP sing 416 n n 
C3' O3' XMP sing 417 n n 
C3' H3' XMP sing 418 n n 
O3' H3O1 XMP sing 419 n n 
#
_atom_sites.entry_id                     2VXO 
_atom_sites.fract_transf_matrix[1][1]    0.01015 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008102 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007815 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 XMP A 1 1694 1694 XMP XMP . 
D 3 SO4 A 1 1695 1695 SO4 SO4 . 
E 3 SO4 A 1 1696 1696 SO4 SO4 . 
F 3 SO4 A 1 1697 1697 SO4 SO4 . 
G 2 XMP B 1 1694 1694 XMP XMP . 
H 3 SO4 B 1 1695 1695 SO4 SO4 . 
I 3 SO4 B 1 1696 1696 SO4 SO4 . 
J 3 SO4 B 1 1697 1697 SO4 SO4 . 
K 4 HOH A 1 2001 2001 HOH HOH . 
K 4 HOH A 2 2002 2002 HOH HOH . 
K 4 HOH A 3 2003 2003 HOH HOH . 
K 4 HOH A 4 2004 2004 HOH HOH . 
K 4 HOH A 5 2005 2005 HOH HOH . 
K 4 HOH A 6 2006 2006 HOH HOH . 
K 4 HOH A 7 2007 2007 HOH HOH . 
K 4 HOH A 8 2008 2008 HOH HOH . 
K 4 HOH A 9 2009 2009 HOH HOH . 
K 4 HOH A 10 2010 2010 HOH HOH . 
K 4 HOH A 11 2011 2011 HOH HOH . 
K 4 HOH A 12 2012 2012 HOH HOH . 
K 4 HOH A 13 2013 2013 HOH HOH . 
K 4 HOH A 14 2014 2014 HOH HOH . 
K 4 HOH A 15 2015 2015 HOH HOH . 
K 4 HOH A 16 2016 2016 HOH HOH . 
K 4 HOH A 17 2017 2017 HOH HOH . 
K 4 HOH A 18 2018 2018 HOH HOH . 
K 4 HOH A 19 2019 2019 HOH HOH . 
K 4 HOH A 20 2020 2020 HOH HOH . 
K 4 HOH A 21 2021 2021 HOH HOH . 
K 4 HOH A 22 2022 2022 HOH HOH . 
K 4 HOH A 23 2023 2023 HOH HOH . 
K 4 HOH A 24 2024 2024 HOH HOH . 
K 4 HOH A 25 2025 2025 HOH HOH . 
K 4 HOH A 26 2026 2026 HOH HOH . 
K 4 HOH A 27 2027 2027 HOH HOH . 
K 4 HOH A 28 2028 2028 HOH HOH . 
K 4 HOH A 29 2029 2029 HOH HOH . 
K 4 HOH A 30 2030 2030 HOH HOH . 
K 4 HOH A 31 2031 2031 HOH HOH . 
K 4 HOH A 32 2032 2032 HOH HOH . 
K 4 HOH A 33 2033 2033 HOH HOH . 
K 4 HOH A 34 2034 2034 HOH HOH . 
K 4 HOH A 35 2035 2035 HOH HOH . 
K 4 HOH A 36 2036 2036 HOH HOH . 
K 4 HOH A 37 2037 2037 HOH HOH . 
K 4 HOH A 38 2038 2038 HOH HOH . 
K 4 HOH A 39 2039 2039 HOH HOH . 
K 4 HOH A 40 2040 2040 HOH HOH . 
K 4 HOH A 41 2041 2041 HOH HOH . 
K 4 HOH A 42 2042 2042 HOH HOH . 
K 4 HOH A 43 2043 2043 HOH HOH . 
K 4 HOH A 44 2044 2044 HOH HOH . 
K 4 HOH A 45 2045 2045 HOH HOH . 
K 4 HOH A 46 2046 2046 HOH HOH . 
K 4 HOH A 47 2047 2047 HOH HOH . 
K 4 HOH A 48 2048 2048 HOH HOH . 
K 4 HOH A 49 2049 2049 HOH HOH . 
K 4 HOH A 50 2050 2050 HOH HOH . 
K 4 HOH A 51 2051 2051 HOH HOH . 
K 4 HOH A 52 2052 2052 HOH HOH . 
K 4 HOH A 53 2053 2053 HOH HOH . 
K 4 HOH A 54 2054 2054 HOH HOH . 
K 4 HOH A 55 2055 2055 HOH HOH . 
K 4 HOH A 56 2056 2056 HOH HOH . 
K 4 HOH A 57 2057 2057 HOH HOH . 
K 4 HOH A 58 2058 2058 HOH HOH . 
K 4 HOH A 59 2059 2059 HOH HOH . 
K 4 HOH A 60 2060 2060 HOH HOH . 
K 4 HOH A 61 2061 2061 HOH HOH . 
K 4 HOH A 62 2062 2062 HOH HOH . 
K 4 HOH A 63 2063 2063 HOH HOH . 
K 4 HOH A 64 2064 2064 HOH HOH . 
K 4 HOH A 65 2065 2065 HOH HOH . 
K 4 HOH A 66 2066 2066 HOH HOH . 
K 4 HOH A 67 2067 2067 HOH HOH . 
L 4 HOH B 1 2001 2001 HOH HOH . 
L 4 HOH B 2 2002 2002 HOH HOH . 
L 4 HOH B 3 2003 2003 HOH HOH . 
L 4 HOH B 4 2004 2004 HOH HOH . 
L 4 HOH B 5 2005 2005 HOH HOH . 
L 4 HOH B 6 2006 2006 HOH HOH . 
L 4 HOH B 7 2007 2007 HOH HOH . 
L 4 HOH B 8 2008 2008 HOH HOH . 
L 4 HOH B 9 2009 2009 HOH HOH . 
L 4 HOH B 10 2010 2010 HOH HOH . 
L 4 HOH B 11 2011 2011 HOH HOH . 
L 4 HOH B 12 2012 2012 HOH HOH . 
L 4 HOH B 13 2013 2013 HOH HOH . 
L 4 HOH B 14 2014 2014 HOH HOH . 
L 4 HOH B 15 2015 2015 HOH HOH . 
L 4 HOH B 16 2016 2016 HOH HOH . 
L 4 HOH B 17 2017 2017 HOH HOH . 
L 4 HOH B 18 2018 2018 HOH HOH . 
L 4 HOH B 19 2019 2019 HOH HOH . 
L 4 HOH B 20 2020 2020 HOH HOH . 
L 4 HOH B 21 2021 2021 HOH HOH . 
L 4 HOH B 22 2022 2022 HOH HOH . 
L 4 HOH B 23 2023 2023 HOH HOH . 
L 4 HOH B 24 2024 2024 HOH HOH . 
L 4 HOH B 25 2025 2025 HOH HOH . 
L 4 HOH B 26 2026 2026 HOH HOH . 
L 4 HOH B 27 2027 2027 HOH HOH . 
L 4 HOH B 28 2028 2028 HOH HOH . 
L 4 HOH B 29 2029 2029 HOH HOH . 
L 4 HOH B 30 2030 2030 HOH HOH . 
L 4 HOH B 31 2031 2031 HOH HOH . 
L 4 HOH B 32 2032 2032 HOH HOH . 
L 4 HOH B 33 2033 2033 HOH HOH . 
L 4 HOH B 34 2034 2034 HOH HOH . 
L 4 HOH B 35 2035 2035 HOH HOH . 
L 4 HOH B 36 2036 2036 HOH HOH . 
L 4 HOH B 37 2037 2037 HOH HOH . 
L 4 HOH B 38 2038 2038 HOH HOH . 
L 4 HOH B 39 2039 2039 HOH HOH . 
L 4 HOH B 40 2040 2040 HOH HOH . 
L 4 HOH B 41 2041 2041 HOH HOH . 
L 4 HOH B 42 2042 2042 HOH HOH . 
L 4 HOH B 43 2043 2043 HOH HOH . 
L 4 HOH B 44 2044 2044 HOH HOH . 
L 4 HOH B 45 2045 2045 HOH HOH . 
L 4 HOH B 46 2046 2046 HOH HOH . 
L 4 HOH B 47 2047 2047 HOH HOH . 
L 4 HOH B 48 2048 2048 HOH HOH . 
L 4 HOH B 49 2049 2049 HOH HOH . 
L 4 HOH B 50 2050 2050 HOH HOH . 
L 4 HOH B 51 2051 2051 HOH HOH . 
L 4 HOH B 52 2052 2052 HOH HOH . 
L 4 HOH B 53 2053 2053 HOH HOH . 
L 4 HOH B 54 2054 2054 HOH HOH . 
L 4 HOH B 55 2055 2055 HOH HOH . 
L 4 HOH B 56 2056 2056 HOH HOH . 
L 4 HOH B 57 2057 2057 HOH HOH . 
L 4 HOH B 58 2058 2058 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P XMP . . . G 2 3.354 -10.427 -20.982 1 25.88 ? P XMP 1694 B 1 
HETATM 2 O O1P XMP . . . G 2 3.997 -9.197 -20.415 1 24.25 ? O1P XMP 1694 B 1 
HETATM 3 O O2P XMP . . . G 2 4.144 -11.689 -20.75 1 27.22 ? O2P XMP 1694 B 1 
HETATM 4 O O5' XMP . . . G 2 2.022 -10.654 -20.092 1 27.01 ? O5' XMP 1694 B 1 
HETATM 5 O O3P XMP . . . G 2 2.812 -10.267 -22.376 1 29.12 ? O3P XMP 1694 B 1 
HETATM 6 C C5' XMP . . . G 2 1.987 -10.429 -18.67 1 24.61 ? C5' XMP 1694 B 1 
HETATM 7 C C4' XMP . . . G 2 0.552 -10.369 -18.13 1 23.81 ? C4' XMP 1694 B 1 
HETATM 8 O O4' XMP . . . G 2 0.001 -9.039 -18.2 1 22.18 ? O4' XMP 1694 B 1 
HETATM 9 C C1' XMP . . . G 2 -1.133 -9.003 -19.078 1 22.49 ? C1' XMP 1694 B 1 
HETATM 10 N N9 XMP . . . G 2 -0.988 -7.818 -19.935 1 22.73 ? N9 XMP 1694 B 1 
HETATM 11 C C4 XMP . . . G 2 -1.668 -6.696 -19.753 1 23.31 ? C4 XMP 1694 B 1 
HETATM 12 N N3 XMP . . . G 2 -2.609 -6.292 -18.882 1 25.62 ? N3 XMP 1694 B 1 
HETATM 13 N N1 XMP . . . G 2 -2.746 -4.167 -19.888 1 25.39 ? N1 XMP 1694 B 1 
HETATM 14 C C2 XMP . . . G 2 -3.134 -5.059 -18.955 1 25 ? C2 XMP 1694 B 1 
HETATM 15 O O2 XMP . . . G 2 -4.014 -4.732 -18.131 1 25.86 ? O2 XMP 1694 B 1 
HETATM 16 C C6 XMP . . . G 2 -1.817 -4.446 -20.811 1 23.7 ? C6 XMP 1694 B 1 
HETATM 17 O O6 XMP . . . G 2 -1.481 -3.603 -21.668 1 26.66 ? O6 XMP 1694 B 1 
HETATM 18 C C5 XMP . . . G 2 -1.189 -5.782 -20.792 1 23.14 ? C5 XMP 1694 B 1 
HETATM 19 N N7 XMP . . . G 2 -0.261 -6.432 -21.513 1 21.4 ? N7 XMP 1694 B 1 
HETATM 20 C C8 XMP . . . G 2 -0.138 -7.665 -20.975 1 22.26 ? C8 XMP 1694 B 1 
HETATM 21 C C2' XMP . . . G 2 -1.079 -10.272 -19.899 1 23.2 ? C2' XMP 1694 B 1 
HETATM 22 O O2' XMP . . . G 2 -2.389 -10.687 -20.252 1 25.63 ? O2' XMP 1694 B 1 
HETATM 23 C C3' XMP . . . G 2 -0.403 -11.234 -18.938 1 25.4 ? C3' XMP 1694 B 1 
HETATM 24 O O3' XMP . . . G 2 -1.364 -11.746 -18.025 1 24.27 ? O3' XMP 1694 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           24 
#