data_2VYA
#
_model_server_result.job_id            bYJag7q_293smKCLrCECLg 
_model_server_result.datetime_utc      '2024-11-04 22:40:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2vya 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1578}' 
#
_entry.id    2VYA 
#
_exptl.entry_id    2VYA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              270.326 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-(quinolin-3-ylmethyl)piperidine-1-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2VYA 
_cell.length_a            103.69 
_cell.length_b            103.69 
_cell.length_c            253.87 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2VYA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 249 A SER 241 1_555 E C18 PF7 . A PF7 1578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale2 B OG SER 249 B SER 241 1_555 I C18 PF7 . B PF7 1578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C16 H18 N2 O2' 
_chem_comp.formula_weight    270.326 
_chem_comp.id                PF7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-(quinolin-3-ylmethyl)piperidine-1-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O19 C18 PF7 doub 237 n n 
C18 N15 PF7 sing 238 n n 
C18 OXT PF7 sing 239 n n 
N15 C16 PF7 sing 240 n n 
N15 C14 PF7 sing 241 n n 
C16 C17 PF7 sing 242 n n 
C17 C12 PF7 sing 243 n n 
C12 C13 PF7 sing 244 n n 
C12 C11 PF7 sing 245 n n 
C13 C14 PF7 sing 246 n n 
C11 C9 PF7 sing 247 n n 
C9 C10 PF7 sing 248 n y 
C9 C8 PF7 doub 249 n y 
C10 C3 PF7 doub 250 n y 
C3 C4 PF7 sing 251 n y 
C3 C2 PF7 sing 252 n y 
C4 C5 PF7 doub 253 n y 
C5 C6 PF7 sing 254 n y 
C6 C1 PF7 doub 255 n y 
C1 C2 PF7 sing 256 n y 
C2 N7 PF7 doub 257 n y 
N7 C8 PF7 sing 258 n y 
OXT HOT PF7 sing 259 n n 
C16 H161 PF7 sing 260 n n 
C16 H162 PF7 sing 261 n n 
C14 H141 PF7 sing 262 n n 
C14 H142 PF7 sing 263 n n 
C17 H171 PF7 sing 264 n n 
C17 H172 PF7 sing 265 n n 
C12 H12 PF7 sing 266 n n 
C13 H131 PF7 sing 267 n n 
C13 H132 PF7 sing 268 n n 
C11 H111 PF7 sing 269 n n 
C11 H112 PF7 sing 270 n n 
C10 H10 PF7 sing 271 n n 
C8 H8 PF7 sing 272 n n 
C4 H4 PF7 sing 273 n n 
C5 H5 PF7 sing 274 n n 
C6 H6 PF7 sing 275 n n 
C1 H1 PF7 sing 276 n n 
#
_atom_sites.entry_id                     2VYA 
_atom_sites.fract_transf_matrix[1][1]    0.009644 
_atom_sites.fract_transf_matrix[1][2]    0.005568 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011136 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003939 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UNX A 1 1576 1576 UNX UNX . 
D 2 UNX A 1 1577 1577 UNX UNX . 
E 3 PF7 A 1 1578 1578 PF7 PF7 . 
F 2 UNX B 1 1575 1575 UNX UNX . 
G 2 UNX B 1 1576 1576 UNX UNX . 
H 4 CL B 1 1577 1577 CL CL . 
I 3 PF7 B 1 1578 1578 PF7 PF7 . 
J 5 HOH A 1 2001 2001 HOH HOH . 
J 5 HOH A 2 2002 2002 HOH HOH . 
J 5 HOH A 3 2003 2003 HOH HOH . 
J 5 HOH A 4 2004 2004 HOH HOH . 
J 5 HOH A 5 2005 2005 HOH HOH . 
J 5 HOH A 6 2006 2006 HOH HOH . 
J 5 HOH A 7 2007 2007 HOH HOH . 
J 5 HOH A 8 2008 2008 HOH HOH . 
J 5 HOH A 9 2009 2009 HOH HOH . 
J 5 HOH A 10 2010 2010 HOH HOH . 
J 5 HOH A 11 2011 2011 HOH HOH . 
J 5 HOH A 12 2012 2012 HOH HOH . 
J 5 HOH A 13 2013 2013 HOH HOH . 
J 5 HOH A 14 2014 2014 HOH HOH . 
J 5 HOH A 15 2015 2015 HOH HOH . 
J 5 HOH A 16 2016 2016 HOH HOH . 
J 5 HOH A 17 2017 2017 HOH HOH . 
J 5 HOH A 18 2018 2018 HOH HOH . 
J 5 HOH A 19 2019 2019 HOH HOH . 
J 5 HOH A 20 2020 2020 HOH HOH . 
J 5 HOH A 21 2021 2021 HOH HOH . 
J 5 HOH A 22 2022 2022 HOH HOH . 
J 5 HOH A 23 2023 2023 HOH HOH . 
J 5 HOH A 24 2024 2024 HOH HOH . 
J 5 HOH A 25 2025 2025 HOH HOH . 
J 5 HOH A 26 2026 2026 HOH HOH . 
J 5 HOH A 27 2027 2027 HOH HOH . 
J 5 HOH A 28 2028 2028 HOH HOH . 
J 5 HOH A 29 2029 2029 HOH HOH . 
J 5 HOH A 30 2030 2030 HOH HOH . 
J 5 HOH A 31 2031 2031 HOH HOH . 
J 5 HOH A 32 2032 2032 HOH HOH . 
J 5 HOH A 33 2033 2033 HOH HOH . 
J 5 HOH A 34 2034 2034 HOH HOH . 
J 5 HOH A 35 2035 2035 HOH HOH . 
J 5 HOH A 36 2036 2036 HOH HOH . 
K 5 HOH B 1 2001 2001 HOH HOH . 
K 5 HOH B 2 2002 2002 HOH HOH . 
K 5 HOH B 3 2003 2003 HOH HOH . 
K 5 HOH B 4 2004 2004 HOH HOH . 
K 5 HOH B 5 2005 2005 HOH HOH . 
K 5 HOH B 6 2006 2006 HOH HOH . 
K 5 HOH B 7 2007 2007 HOH HOH . 
K 5 HOH B 8 2008 2008 HOH HOH . 
K 5 HOH B 9 2009 2009 HOH HOH . 
K 5 HOH B 10 2010 2010 HOH HOH . 
K 5 HOH B 11 2011 2011 HOH HOH . 
K 5 HOH B 12 2012 2012 HOH HOH . 
K 5 HOH B 13 2013 2013 HOH HOH . 
K 5 HOH B 14 2014 2014 HOH HOH . 
K 5 HOH B 15 2015 2015 HOH HOH . 
K 5 HOH B 16 2016 2016 HOH HOH . 
K 5 HOH B 17 2017 2017 HOH HOH . 
K 5 HOH B 18 2018 2018 HOH HOH . 
K 5 HOH B 19 2019 2019 HOH HOH . 
K 5 HOH B 20 2020 2020 HOH HOH . 
K 5 HOH B 21 2021 2021 HOH HOH . 
K 5 HOH B 22 2022 2022 HOH HOH . 
K 5 HOH B 23 2023 2023 HOH HOH . 
K 5 HOH B 24 2024 2024 HOH HOH . 
K 5 HOH B 25 2025 2025 HOH HOH . 
K 5 HOH B 26 2026 2026 HOH HOH . 
K 5 HOH B 27 2027 2027 HOH HOH . 
K 5 HOH B 28 2028 2028 HOH HOH . 
K 5 HOH B 29 2029 2029 HOH HOH . 
K 5 HOH B 30 2030 2030 HOH HOH . 
K 5 HOH B 31 2031 2031 HOH HOH . 
K 5 HOH B 32 2032 2032 HOH HOH . 
K 5 HOH B 33 2033 2033 HOH HOH . 
K 5 HOH B 34 2034 2034 HOH HOH . 
K 5 HOH B 35 2035 2035 HOH HOH . 
K 5 HOH B 36 2036 2036 HOH HOH . 
K 5 HOH B 37 2037 2037 HOH HOH . 
K 5 HOH B 38 2038 2038 HOH HOH . 
K 5 HOH B 39 2039 2039 HOH HOH . 
K 5 HOH B 40 2040 2040 HOH HOH . 
K 5 HOH B 41 2041 2041 HOH HOH . 
K 5 HOH B 42 2042 2042 HOH HOH . 
K 5 HOH B 43 2043 2043 HOH HOH . 
K 5 HOH B 44 2044 2044 HOH HOH . 
K 5 HOH B 45 2045 2045 HOH HOH . 
K 5 HOH B 46 2046 2046 HOH HOH . 
K 5 HOH B 47 2047 2047 HOH HOH . 
K 5 HOH B 48 2048 2048 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O19 PF7 . . . E 3 50.965 -15.112 -34.67 1 31.31 ? O19 PF7 1578 A 1 
HETATM 2 C C18 PF7 . . . E 3 50.44 -15.134 -35.798 1 33.27 ? C18 PF7 1578 A 1 
HETATM 3 N N15 PF7 . . . E 3 49.125 -14.95 -35.947 1 33.79 ? N15 PF7 1578 A 1 
HETATM 4 C C16 PF7 . . . E 3 48.204 -14.719 -34.823 1 33.55 ? C16 PF7 1578 A 1 
HETATM 5 C C17 PF7 . . . E 3 47.184 -15.867 -34.913 1 33.83 ? C17 PF7 1578 A 1 
HETATM 6 C C12 PF7 . . . E 3 46.472 -15.913 -36.268 1 33.35 ? C12 PF7 1578 A 1 
HETATM 7 C C13 PF7 . . . E 3 47.522 -16.092 -37.353 1 33.91 ? C13 PF7 1578 A 1 
HETATM 8 C C14 PF7 . . . E 3 48.541 -14.956 -37.295 1 34.95 ? C14 PF7 1578 A 1 
HETATM 9 C C11 PF7 . . . E 3 45.483 -17.079 -36.322 1 32.19 ? C11 PF7 1578 A 1 
HETATM 10 C C9 PF7 . . . E 3 44.13 -16.654 -35.803 1 31.95 ? C9 PF7 1578 A 1 
HETATM 11 C C10 PF7 . . . E 3 43.78 -16.841 -34.467 1 31.75 ? C10 PF7 1578 A 1 
HETATM 12 C C3 PF7 . . . E 3 42.518 -16.434 -34.021 1 31.76 ? C3 PF7 1578 A 1 
HETATM 13 C C4 PF7 . . . E 3 42.161 -16.606 -32.685 1 31.56 ? C4 PF7 1578 A 1 
HETATM 14 C C5 PF7 . . . E 3 40.906 -16.196 -32.242 1 31.92 ? C5 PF7 1578 A 1 
HETATM 15 C C6 PF7 . . . E 3 39.991 -15.604 -33.131 1 31.89 ? C6 PF7 1578 A 1 
HETATM 16 C C1 PF7 . . . E 3 40.337 -15.431 -34.469 1 31.83 ? C1 PF7 1578 A 1 
HETATM 17 C C2 PF7 . . . E 3 41.599 -15.851 -34.912 1 32.13 ? C2 PF7 1578 A 1 
HETATM 18 N N7 PF7 . . . E 3 41.95 -15.681 -36.249 1 32.04 ? N7 PF7 1578 A 1 
HETATM 19 C C8 PF7 . . . E 3 43.222 -16.075 -36.683 1 31.76 ? C8 PF7 1578 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#