data_2VYU # _model_server_result.job_id lpHIVUNlq88md8M3M10HDA _model_server_result.datetime_utc '2024-12-03 08:14:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vyu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 2VYU # _exptl.entry_id 2VYU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.171 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLINE ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2VYU _cell.length_a 45.06 _cell.length_b 112.73 _cell.length_c 79.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VYU _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C5 H14 N O 1' _chem_comp.formula_weight 104.171 _chem_comp.id CHT _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLINE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 CHT sing 70 n n C4 O6 CHT sing 71 n n C4 HC41 CHT sing 72 n n C4 HC42 CHT sing 73 n n C5 N1 CHT sing 74 n n C5 HC51 CHT sing 75 n n C5 HC52 CHT sing 76 n n C6 N1 CHT sing 77 n n C6 H61 CHT sing 78 n n C6 H62 CHT sing 79 n n C6 H63 CHT sing 80 n n C7 N1 CHT sing 81 n n C7 H71 CHT sing 82 n n C7 H72 CHT sing 83 n n C7 H73 CHT sing 84 n n C8 N1 CHT sing 85 n n C8 H81 CHT sing 86 n n C8 H82 CHT sing 87 n n C8 H83 CHT sing 88 n n O6 HO6 CHT sing 89 n n # _atom_sites.entry_id 2VYU _atom_sites.fract_transf_matrix[1][1] 0.022193 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008871 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012579 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CHT A 1 401 312 CHT CHT . C 2 CHT A 1 402 313 CHT CHT . D 2 CHT A 1 403 314 CHT CHT . E 2 CHT A 1 404 315 CHT CHT . F 2 CHT A 1 405 316 CHT CHT . G 2 CHT A 1 406 317 CHT CHT . H 2 CHT A 1 407 318 CHT CHT . I 3 HOH A 1 501 2166 HOH HOH . I 3 HOH A 2 502 2193 HOH HOH . I 3 HOH A 3 503 2235 HOH HOH . I 3 HOH A 4 504 2024 HOH HOH . I 3 HOH A 5 505 2043 HOH HOH . I 3 HOH A 6 506 2245 HOH HOH . I 3 HOH A 7 507 2197 HOH HOH . I 3 HOH A 8 508 2068 HOH HOH . I 3 HOH A 9 509 2196 HOH HOH . I 3 HOH A 10 510 2212 HOH HOH . I 3 HOH A 11 511 2218 HOH HOH . I 3 HOH A 12 512 2046 HOH HOH . I 3 HOH A 13 513 2145 HOH HOH . I 3 HOH A 14 514 2061 HOH HOH . I 3 HOH A 15 515 2257 HOH HOH . I 3 HOH A 16 516 2151 HOH HOH . I 3 HOH A 17 517 2088 HOH HOH . I 3 HOH A 18 518 2244 HOH HOH . I 3 HOH A 19 519 2131 HOH HOH . I 3 HOH A 20 520 2165 HOH HOH . I 3 HOH A 21 521 2033 HOH HOH . I 3 HOH A 22 522 2066 HOH HOH . I 3 HOH A 23 523 2112 HOH HOH . I 3 HOH A 24 524 2037 HOH HOH . I 3 HOH A 25 525 2268 HOH HOH . I 3 HOH A 26 526 2052 HOH HOH . I 3 HOH A 27 527 2201 HOH HOH . I 3 HOH A 28 528 2122 HOH HOH . I 3 HOH A 29 529 2118 HOH HOH . I 3 HOH A 30 530 2023 HOH HOH . I 3 HOH A 31 531 2095 HOH HOH . I 3 HOH A 32 532 2183 HOH HOH . I 3 HOH A 33 533 2190 HOH HOH . I 3 HOH A 34 534 2044 HOH HOH . I 3 HOH A 35 535 2169 HOH HOH . I 3 HOH A 36 536 2141 HOH HOH . I 3 HOH A 37 537 2155 HOH HOH . I 3 HOH A 38 538 2114 HOH HOH . I 3 HOH A 39 539 2104 HOH HOH . I 3 HOH A 40 540 2180 HOH HOH . I 3 HOH A 41 541 2001 HOH HOH . I 3 HOH A 42 542 2264 HOH HOH . I 3 HOH A 43 543 2040 HOH HOH . I 3 HOH A 44 544 2185 HOH HOH . I 3 HOH A 45 545 2072 HOH HOH . I 3 HOH A 46 546 2020 HOH HOH . I 3 HOH A 47 547 2156 HOH HOH . I 3 HOH A 48 548 2237 HOH HOH . I 3 HOH A 49 549 2249 HOH HOH . I 3 HOH A 50 550 2087 HOH HOH . I 3 HOH A 51 551 2191 HOH HOH . I 3 HOH A 52 552 2267 HOH HOH . I 3 HOH A 53 553 2074 HOH HOH . I 3 HOH A 54 554 2233 HOH HOH . I 3 HOH A 55 555 2176 HOH HOH . I 3 HOH A 56 556 2240 HOH HOH . I 3 HOH A 57 557 2248 HOH HOH . I 3 HOH A 58 558 2246 HOH HOH . I 3 HOH A 59 559 2158 HOH HOH . I 3 HOH A 60 560 2130 HOH HOH . I 3 HOH A 61 561 2047 HOH HOH . I 3 HOH A 62 562 2250 HOH HOH . I 3 HOH A 63 563 2113 HOH HOH . I 3 HOH A 64 564 2154 HOH HOH . I 3 HOH A 65 565 2181 HOH HOH . I 3 HOH A 66 566 2090 HOH HOH . I 3 HOH A 67 567 2102 HOH HOH . I 3 HOH A 68 568 2128 HOH HOH . I 3 HOH A 69 569 2032 HOH HOH . I 3 HOH A 70 570 2157 HOH HOH . I 3 HOH A 71 571 2251 HOH HOH . I 3 HOH A 72 572 2115 HOH HOH . I 3 HOH A 73 573 2133 HOH HOH . I 3 HOH A 74 574 2231 HOH HOH . I 3 HOH A 75 575 2213 HOH HOH . I 3 HOH A 76 576 2062 HOH HOH . I 3 HOH A 77 577 2039 HOH HOH . I 3 HOH A 78 578 2239 HOH HOH . I 3 HOH A 79 579 2204 HOH HOH . I 3 HOH A 80 580 2214 HOH HOH . I 3 HOH A 81 581 2094 HOH HOH . I 3 HOH A 82 582 2255 HOH HOH . I 3 HOH A 83 583 2003 HOH HOH . I 3 HOH A 84 584 2200 HOH HOH . I 3 HOH A 85 585 2210 HOH HOH . I 3 HOH A 86 586 2199 HOH HOH . I 3 HOH A 87 587 2065 HOH HOH . I 3 HOH A 88 588 2188 HOH HOH . I 3 HOH A 89 589 2082 HOH HOH . I 3 HOH A 90 590 2198 HOH HOH . I 3 HOH A 91 591 2161 HOH HOH . I 3 HOH A 92 592 2261 HOH HOH . I 3 HOH A 93 593 2153 HOH HOH . I 3 HOH A 94 594 2035 HOH HOH . I 3 HOH A 95 595 2002 HOH HOH . I 3 HOH A 96 596 2175 HOH HOH . I 3 HOH A 97 597 2205 HOH HOH . I 3 HOH A 98 598 2232 HOH HOH . I 3 HOH A 99 599 2170 HOH HOH . I 3 HOH A 100 600 2159 HOH HOH . I 3 HOH A 101 601 2067 HOH HOH . I 3 HOH A 102 602 2097 HOH HOH . I 3 HOH A 103 603 2022 HOH HOH . I 3 HOH A 104 604 2038 HOH HOH . I 3 HOH A 105 605 2069 HOH HOH . I 3 HOH A 106 606 2054 HOH HOH . I 3 HOH A 107 607 2134 HOH HOH . I 3 HOH A 108 608 2055 HOH HOH . I 3 HOH A 109 609 2179 HOH HOH . I 3 HOH A 110 610 2056 HOH HOH . I 3 HOH A 111 611 2209 HOH HOH . I 3 HOH A 112 612 2265 HOH HOH . I 3 HOH A 113 613 2186 HOH HOH . I 3 HOH A 114 614 2208 HOH HOH . I 3 HOH A 115 615 2101 HOH HOH . I 3 HOH A 116 616 2207 HOH HOH . I 3 HOH A 117 617 2254 HOH HOH . I 3 HOH A 118 618 2129 HOH HOH . I 3 HOH A 119 619 2127 HOH HOH . I 3 HOH A 120 620 2041 HOH HOH . I 3 HOH A 121 621 2152 HOH HOH . I 3 HOH A 122 622 2216 HOH HOH . I 3 HOH A 123 623 2229 HOH HOH . I 3 HOH A 124 624 2045 HOH HOH . I 3 HOH A 125 625 2142 HOH HOH . I 3 HOH A 126 626 2063 HOH HOH . I 3 HOH A 127 627 2123 HOH HOH . I 3 HOH A 128 628 2124 HOH HOH . I 3 HOH A 129 629 2258 HOH HOH . I 3 HOH A 130 630 2148 HOH HOH . I 3 HOH A 131 631 2136 HOH HOH . I 3 HOH A 132 632 2086 HOH HOH . I 3 HOH A 133 633 2144 HOH HOH . I 3 HOH A 134 634 2272 HOH HOH . I 3 HOH A 135 635 2132 HOH HOH . I 3 HOH A 136 636 2160 HOH HOH . I 3 HOH A 137 637 2206 HOH HOH . I 3 HOH A 138 638 2259 HOH HOH . I 3 HOH A 139 639 2270 HOH HOH . I 3 HOH A 140 640 2147 HOH HOH . I 3 HOH A 141 641 2139 HOH HOH . I 3 HOH A 142 642 2073 HOH HOH . I 3 HOH A 143 643 2149 HOH HOH . I 3 HOH A 144 644 2048 HOH HOH . I 3 HOH A 145 645 2119 HOH HOH . I 3 HOH A 146 646 2236 HOH HOH . I 3 HOH A 147 647 2108 HOH HOH . I 3 HOH A 148 648 2126 HOH HOH . I 3 HOH A 149 649 2184 HOH HOH . I 3 HOH A 150 650 2195 HOH HOH . I 3 HOH A 151 651 2075 HOH HOH . I 3 HOH A 152 652 2182 HOH HOH . I 3 HOH A 153 653 2189 HOH HOH . I 3 HOH A 154 654 2057 HOH HOH . I 3 HOH A 155 655 2227 HOH HOH . I 3 HOH A 156 656 2018 HOH HOH . I 3 HOH A 157 657 2256 HOH HOH . I 3 HOH A 158 658 2125 HOH HOH . I 3 HOH A 159 659 2105 HOH HOH . I 3 HOH A 160 660 2051 HOH HOH . I 3 HOH A 161 661 2202 HOH HOH . I 3 HOH A 162 662 2223 HOH HOH . I 3 HOH A 163 663 2096 HOH HOH . I 3 HOH A 164 664 2138 HOH HOH . I 3 HOH A 165 665 2012 HOH HOH . I 3 HOH A 166 666 2004 HOH HOH . I 3 HOH A 167 667 2226 HOH HOH . I 3 HOH A 168 668 2187 HOH HOH . I 3 HOH A 169 669 2260 HOH HOH . I 3 HOH A 170 670 2162 HOH HOH . I 3 HOH A 171 671 2083 HOH HOH . I 3 HOH A 172 672 2098 HOH HOH . I 3 HOH A 173 673 2173 HOH HOH . I 3 HOH A 174 674 2273 HOH HOH . I 3 HOH A 175 675 2013 HOH HOH . I 3 HOH A 176 676 2262 HOH HOH . I 3 HOH A 177 677 2219 HOH HOH . I 3 HOH A 178 678 2021 HOH HOH . I 3 HOH A 179 679 2217 HOH HOH . I 3 HOH A 180 680 2171 HOH HOH . I 3 HOH A 181 681 2111 HOH HOH . I 3 HOH A 182 682 2007 HOH HOH . I 3 HOH A 183 683 2137 HOH HOH . I 3 HOH A 184 684 2025 HOH HOH . I 3 HOH A 185 685 2192 HOH HOH . I 3 HOH A 186 686 2029 HOH HOH . I 3 HOH A 187 687 2238 HOH HOH . I 3 HOH A 188 688 2247 HOH HOH . I 3 HOH A 189 689 2243 HOH HOH . I 3 HOH A 190 690 2014 HOH HOH . I 3 HOH A 191 691 2030 HOH HOH . I 3 HOH A 192 692 2168 HOH HOH . I 3 HOH A 193 693 2167 HOH HOH . I 3 HOH A 194 694 2146 HOH HOH . I 3 HOH A 195 695 2241 HOH HOH . I 3 HOH A 196 696 2252 HOH HOH . I 3 HOH A 197 697 2228 HOH HOH . I 3 HOH A 198 698 2079 HOH HOH . I 3 HOH A 199 699 2225 HOH HOH . I 3 HOH A 200 700 2077 HOH HOH . I 3 HOH A 201 701 2091 HOH HOH . I 3 HOH A 202 702 2081 HOH HOH . I 3 HOH A 203 703 2150 HOH HOH . I 3 HOH A 204 704 2164 HOH HOH . I 3 HOH A 205 705 2234 HOH HOH . I 3 HOH A 206 706 2172 HOH HOH . I 3 HOH A 207 707 2028 HOH HOH . I 3 HOH A 208 708 2220 HOH HOH . I 3 HOH A 209 709 2224 HOH HOH . I 3 HOH A 210 710 2274 HOH HOH . I 3 HOH A 211 711 2178 HOH HOH . I 3 HOH A 212 712 2221 HOH HOH . I 3 HOH A 213 713 2036 HOH HOH . I 3 HOH A 214 714 2203 HOH HOH . I 3 HOH A 215 715 2003 HOH HOH . I 3 HOH A 216 716 2263 HOH HOH . I 3 HOH A 217 717 2103 HOH HOH . I 3 HOH A 218 718 2174 HOH HOH . I 3 HOH A 219 719 2050 HOH HOH . I 3 HOH A 220 720 2269 HOH HOH . I 3 HOH A 221 721 2222 HOH HOH . I 3 HOH A 222 722 2140 HOH HOH . I 3 HOH A 223 723 2253 HOH HOH . I 3 HOH A 224 724 2099 HOH HOH . I 3 HOH A 225 725 2177 HOH HOH . I 3 HOH A 226 726 2194 HOH HOH . I 3 HOH A 227 727 2230 HOH HOH . I 3 HOH A 228 728 2163 HOH HOH . I 3 HOH A 229 729 2059 HOH HOH . I 3 HOH A 230 730 2143 HOH HOH . I 3 HOH A 231 731 2107 HOH HOH . I 3 HOH A 232 732 2271 HOH HOH . I 3 HOH A 233 733 2006 HOH HOH . I 3 HOH A 234 734 2076 HOH HOH . I 3 HOH A 235 735 2011 HOH HOH . I 3 HOH A 236 736 2027 HOH HOH . I 3 HOH A 237 737 2109 HOH HOH . I 3 HOH A 238 738 2058 HOH HOH . I 3 HOH A 239 739 2070 HOH HOH . I 3 HOH A 240 740 2053 HOH HOH . I 3 HOH A 241 741 2215 HOH HOH . I 3 HOH A 242 742 2010 HOH HOH . I 3 HOH A 243 743 2211 HOH HOH . I 3 HOH A 244 744 2106 HOH HOH . I 3 HOH A 245 745 2093 HOH HOH . I 3 HOH A 246 746 2034 HOH HOH . I 3 HOH A 247 747 2064 HOH HOH . I 3 HOH A 248 748 2001 HOH HOH . I 3 HOH A 249 749 2242 HOH HOH . I 3 HOH A 250 750 2005 HOH HOH . I 3 HOH A 251 751 2089 HOH HOH . I 3 HOH A 252 752 2019 HOH HOH . I 3 HOH A 253 753 2049 HOH HOH . I 3 HOH A 254 754 2078 HOH HOH . I 3 HOH A 255 755 2266 HOH HOH . I 3 HOH A 256 756 2117 HOH HOH . I 3 HOH A 257 757 2121 HOH HOH . I 3 HOH A 258 758 2016 HOH HOH . I 3 HOH A 259 759 2015 HOH HOH . I 3 HOH A 260 760 2092 HOH HOH . I 3 HOH A 261 761 2084 HOH HOH . I 3 HOH A 262 762 2100 HOH HOH . I 3 HOH A 263 763 2085 HOH HOH . I 3 HOH A 264 764 2031 HOH HOH . I 3 HOH A 265 765 2042 HOH HOH . I 3 HOH A 266 766 2135 HOH HOH . I 3 HOH A 267 767 2110 HOH HOH . I 3 HOH A 268 768 2017 HOH HOH . I 3 HOH A 269 769 2080 HOH HOH . I 3 HOH A 270 770 2009 HOH HOH . I 3 HOH A 271 771 2120 HOH HOH . I 3 HOH A 272 772 2002 HOH HOH . I 3 HOH A 273 773 2008 HOH HOH . I 3 HOH A 274 774 2071 HOH HOH . I 3 HOH A 275 775 2060 HOH HOH . I 3 HOH A 276 776 2116 HOH HOH . I 3 HOH A 277 777 2026 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 CHT . . . F 2 -4.493 19.218 32.515 1 52.63 ? C4 CHT 405 A 1 HETATM 2 C C5 CHT . . . F 2 -4.762 18.657 31.055 1 51.16 ? C5 CHT 405 A 1 HETATM 3 C C6 CHT . . . F 2 -4.688 16.374 30.049 1 50.55 ? C6 CHT 405 A 1 HETATM 4 C C7 CHT . . . F 2 -5.951 16.646 32.066 1 51.01 ? C7 CHT 405 A 1 HETATM 5 C C8 CHT . . . F 2 -6.722 17.618 29.987 1 50.56 ? C8 CHT 405 A 1 HETATM 6 O O6 CHT . . . F 2 -5.361 20.295 32.708 1 53.91 ? O6 CHT 405 A 1 HETATM 7 N N1 CHT . . . F 2 -5.516 17.327 30.796 1 50.83 ? N1 CHT 405 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #