data_2VZW # _model_server_result.job_id 3Fm3zIZsd4QzPZHUT_bWgA _model_server_result.datetime_utc '2024-11-05 00:30:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2vzw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1209}' # _entry.id 2VZW # _exptl.entry_id 2VZW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2VZW _cell.length_a 87.924 _cell.length_b 87.924 _cell.length_c 66.76 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VZW _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 88 A HIS 147 1_555 C FE HEM . A HEM 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc2 B NE2 HIS 88 B HIS 147 1_555 E FE HEM . B HEM 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc3 E FE HEM . B HEM 1209 1_555 F O2 OXY . B OXY 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 122 n n CHA C4D HEM doub 123 n n CHA HHA HEM sing 124 n n CHB C4A HEM sing 125 n n CHB C1B HEM doub 126 n n CHB HHB HEM sing 127 n n CHC C4B HEM sing 128 n n CHC C1C HEM doub 129 n n CHC HHC HEM sing 130 n n CHD C4C HEM doub 131 n n CHD C1D HEM sing 132 n n CHD HHD HEM sing 133 n n C1A C2A HEM doub 134 n y C1A NA HEM sing 135 n y C2A C3A HEM sing 136 n y C2A CAA HEM sing 137 n n C3A C4A HEM doub 138 n y C3A CMA HEM sing 139 n n C4A NA HEM sing 140 n y CMA HMA HEM sing 141 n n CMA HMAA HEM sing 142 n n CMA HMAB HEM sing 143 n n CAA CBA HEM sing 144 n n CAA HAA HEM sing 145 n n CAA HAAA HEM sing 146 n n CBA CGA HEM sing 147 n n CBA HBA HEM sing 148 n n CBA HBAA HEM sing 149 n n CGA O1A HEM doub 150 n n CGA O2A HEM sing 151 n n C1B C2B HEM sing 152 n n C1B NB HEM sing 153 n n C2B C3B HEM doub 154 n n C2B CMB HEM sing 155 n n C3B C4B HEM sing 156 n n C3B CAB HEM sing 157 n n C4B NB HEM doub 158 n n CMB HMB HEM sing 159 n n CMB HMBA HEM sing 160 n n CMB HMBB HEM sing 161 n n CAB CBB HEM doub 162 n n CAB HAB HEM sing 163 n n CBB HBB HEM sing 164 n n CBB HBBA HEM sing 165 n n C1C C2C HEM sing 166 n y C1C NC HEM sing 167 n y C2C C3C HEM doub 168 n y C2C CMC HEM sing 169 n n C3C C4C HEM sing 170 n y C3C CAC HEM sing 171 n n C4C NC HEM sing 172 n y CMC HMC HEM sing 173 n n CMC HMCA HEM sing 174 n n CMC HMCB HEM sing 175 n n CAC CBC HEM doub 176 n n CAC HAC HEM sing 177 n n CBC HBC HEM sing 178 n n CBC HBCA HEM sing 179 n n C1D C2D HEM sing 180 n n C1D ND HEM doub 181 n n C2D C3D HEM doub 182 n n C2D CMD HEM sing 183 n n C3D C4D HEM sing 184 n n C3D CAD HEM sing 185 n n C4D ND HEM sing 186 n n CMD HMD HEM sing 187 n n CMD HMDA HEM sing 188 n n CMD HMDB HEM sing 189 n n CAD CBD HEM sing 190 n n CAD HAD HEM sing 191 n n CAD HADA HEM sing 192 n n CBD CGD HEM sing 193 n n CBD HBD HEM sing 194 n n CBD HBDA HEM sing 195 n n CGD O1D HEM doub 196 n n CGD O2D HEM sing 197 n n O2A H2A HEM sing 198 n n O2D H2D HEM sing 199 n n FE NA HEM sing 200 n n FE NB HEM sing 201 n n FE NC HEM sing 202 n n FE ND HEM sing 203 n n # _atom_sites.entry_id 2VZW _atom_sites.fract_transf_matrix[1][1] 0.011373 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011373 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 1206 1206 HEM HEM . D 3 ACT A 1 1207 1207 ACT ACT . E 2 HEM B 1 1209 1209 HEM HEM . F 4 OXY B 1 1210 1210 OXY OXY . G 3 ACT B 1 1211 1211 ACT ACT . H 5 HOH A 1 2001 2001 HOH HOH . H 5 HOH A 2 2002 2002 HOH HOH . H 5 HOH A 3 2003 2003 HOH HOH . H 5 HOH A 4 2004 2004 HOH HOH . H 5 HOH A 5 2005 2005 HOH HOH . H 5 HOH A 6 2006 2006 HOH HOH . H 5 HOH A 7 2007 2007 HOH HOH . H 5 HOH A 8 2008 2008 HOH HOH . H 5 HOH A 9 2009 2009 HOH HOH . H 5 HOH A 10 2010 2010 HOH HOH . H 5 HOH A 11 2011 2011 HOH HOH . H 5 HOH A 12 2012 2012 HOH HOH . H 5 HOH A 13 2013 2013 HOH HOH . H 5 HOH A 14 2014 2014 HOH HOH . H 5 HOH A 15 2015 2015 HOH HOH . H 5 HOH A 16 2016 2016 HOH HOH . H 5 HOH A 17 2017 2017 HOH HOH . H 5 HOH A 18 2018 2018 HOH HOH . H 5 HOH A 19 2019 2019 HOH HOH . H 5 HOH A 20 2020 2020 HOH HOH . H 5 HOH A 21 2021 2021 HOH HOH . H 5 HOH A 22 2022 2022 HOH HOH . H 5 HOH A 23 2023 2023 HOH HOH . H 5 HOH A 24 2024 2024 HOH HOH . H 5 HOH A 25 2025 2025 HOH HOH . H 5 HOH A 26 2026 2026 HOH HOH . H 5 HOH A 27 2027 2027 HOH HOH . H 5 HOH A 28 2028 2028 HOH HOH . H 5 HOH A 29 2029 2029 HOH HOH . H 5 HOH A 30 2030 2030 HOH HOH . H 5 HOH A 31 2031 2031 HOH HOH . H 5 HOH A 32 2032 2032 HOH HOH . H 5 HOH A 33 2033 2033 HOH HOH . H 5 HOH A 34 2034 2034 HOH HOH . H 5 HOH A 35 2035 2035 HOH HOH . H 5 HOH A 36 2036 2036 HOH HOH . H 5 HOH A 37 2037 2037 HOH HOH . H 5 HOH A 38 2038 2038 HOH HOH . H 5 HOH A 39 2039 2039 HOH HOH . H 5 HOH A 40 2040 2040 HOH HOH . H 5 HOH A 41 2041 2041 HOH HOH . H 5 HOH A 42 2042 2042 HOH HOH . H 5 HOH A 43 2043 2043 HOH HOH . H 5 HOH A 44 2044 2044 HOH HOH . H 5 HOH A 45 2045 2045 HOH HOH . H 5 HOH A 46 2046 2046 HOH HOH . H 5 HOH A 47 2047 2047 HOH HOH . H 5 HOH A 48 2048 2048 HOH HOH . H 5 HOH A 49 2049 2049 HOH HOH . H 5 HOH A 50 2050 2050 HOH HOH . H 5 HOH A 51 2051 2051 HOH HOH . H 5 HOH A 52 2052 2052 HOH HOH . I 5 HOH B 1 2001 2001 HOH HOH . I 5 HOH B 2 2002 2002 HOH HOH . I 5 HOH B 3 2003 2003 HOH HOH . I 5 HOH B 4 2004 2004 HOH HOH . I 5 HOH B 5 2005 2005 HOH HOH . I 5 HOH B 6 2006 2006 HOH HOH . I 5 HOH B 7 2007 2007 HOH HOH . I 5 HOH B 8 2008 2008 HOH HOH . I 5 HOH B 9 2009 2009 HOH HOH . I 5 HOH B 10 2010 2010 HOH HOH . I 5 HOH B 11 2011 2011 HOH HOH . I 5 HOH B 12 2012 2012 HOH HOH . I 5 HOH B 13 2013 2013 HOH HOH . I 5 HOH B 14 2014 2014 HOH HOH . I 5 HOH B 15 2015 2015 HOH HOH . I 5 HOH B 16 2016 2016 HOH HOH . I 5 HOH B 17 2017 2017 HOH HOH . I 5 HOH B 18 2018 2018 HOH HOH . I 5 HOH B 19 2019 2019 HOH HOH . I 5 HOH B 20 2020 2020 HOH HOH . I 5 HOH B 21 2021 2021 HOH HOH . I 5 HOH B 22 2022 2022 HOH HOH . I 5 HOH B 23 2023 2023 HOH HOH . I 5 HOH B 24 2024 2024 HOH HOH . I 5 HOH B 25 2025 2025 HOH HOH . I 5 HOH B 26 2026 2026 HOH HOH . I 5 HOH B 27 2027 2027 HOH HOH . I 5 HOH B 28 2028 2028 HOH HOH . I 5 HOH B 29 2029 2029 HOH HOH . I 5 HOH B 30 2030 2030 HOH HOH . I 5 HOH B 31 2031 2031 HOH HOH . I 5 HOH B 32 2032 2032 HOH HOH . I 5 HOH B 33 2033 2033 HOH HOH . I 5 HOH B 34 2034 2034 HOH HOH . I 5 HOH B 35 2035 2035 HOH HOH . I 5 HOH B 36 2036 2036 HOH HOH . I 5 HOH B 37 2037 2037 HOH HOH . I 5 HOH B 38 2038 2038 HOH HOH . I 5 HOH B 39 2039 2039 HOH HOH . I 5 HOH B 40 2040 2040 HOH HOH . I 5 HOH B 41 2041 2041 HOH HOH . I 5 HOH B 42 2042 2042 HOH HOH . I 5 HOH B 43 2043 2043 HOH HOH . I 5 HOH B 44 2044 2044 HOH HOH . I 5 HOH B 45 2045 2045 HOH HOH . I 5 HOH B 46 2046 2046 HOH HOH . I 5 HOH B 47 2047 2047 HOH HOH . I 5 HOH B 48 2048 2048 HOH HOH . I 5 HOH B 49 2049 2049 HOH HOH . I 5 HOH B 50 2050 2050 HOH HOH . I 5 HOH B 51 2051 2051 HOH HOH . I 5 HOH B 52 2052 2052 HOH HOH . I 5 HOH B 53 2053 2053 HOH HOH . I 5 HOH B 54 2054 2054 HOH HOH . I 5 HOH B 55 2055 2055 HOH HOH . I 5 HOH B 56 2056 2056 HOH HOH . I 5 HOH B 57 2057 2057 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 -34.845 33.512 87.246 1 41.01 ? CHA HEM 1209 B 1 HETATM 2 C CHB HEM . . . E 2 -33.272 30.126 84.227 1 44.49 ? CHB HEM 1209 B 1 HETATM 3 C CHC HEM . . . E 2 -36.562 31.434 81.011 1 42.29 ? CHC HEM 1209 B 1 HETATM 4 C CHD HEM . . . E 2 -37.222 35.562 83.493 1 40.23 ? CHD HEM 1209 B 1 HETATM 5 C C1A HEM . . . E 2 -34.171 32.398 86.786 1 40.81 ? C1A HEM 1209 B 1 HETATM 6 C C2A HEM . . . E 2 -33.254 31.578 87.495 1 41.45 ? C2A HEM 1209 B 1 HETATM 7 C C3A HEM . . . E 2 -32.806 30.644 86.646 1 41.99 ? C3A HEM 1209 B 1 HETATM 8 C C4A HEM . . . E 2 -33.478 30.835 85.394 1 41.79 ? C4A HEM 1209 B 1 HETATM 9 C CMA HEM . . . E 2 -31.827 29.493 86.924 1 39.01 ? CMA HEM 1209 B 1 HETATM 10 C CAA HEM . . . E 2 -32.912 31.726 88.992 1 44.55 ? CAA HEM 1209 B 1 HETATM 11 C CBA HEM . . . E 2 -31.796 32.717 89.172 1 47.47 ? CBA HEM 1209 B 1 HETATM 12 C CGA HEM . . . E 2 -31.627 32.688 90.664 1 46.38 ? CGA HEM 1209 B 1 HETATM 13 O O1A HEM . . . E 2 -32.562 32.329 91.412 1 46.15 ? O1A HEM 1209 B 1 HETATM 14 O O2A HEM . . . E 2 -30.52 33.057 91.085 1 46.45 ? O2A HEM 1209 B 1 HETATM 15 C C1B HEM . . . E 2 -34.022 30.151 83.074 1 42.95 ? C1B HEM 1209 B 1 HETATM 16 C C2B HEM . . . E 2 -33.931 29.204 81.981 1 43.8 ? C2B HEM 1209 B 1 HETATM 17 C C3B HEM . . . E 2 -34.872 29.543 81.1 1 42.13 ? C3B HEM 1209 B 1 HETATM 18 C C4B HEM . . . E 2 -35.555 30.7 81.619 1 40.49 ? C4B HEM 1209 B 1 HETATM 19 C CMB HEM . . . E 2 -32.921 28.042 81.875 1 39.64 ? CMB HEM 1209 B 1 HETATM 20 C CAB HEM . . . E 2 -35.17 28.802 79.777 1 42.04 ? CAB HEM 1209 B 1 HETATM 21 C CBB HEM . . . E 2 -36.418 28.803 79.297 1 36.37 ? CBB HEM 1209 B 1 HETATM 22 C C1C HEM . . . E 2 -36.934 32.74 81.31 1 41.34 ? C1C HEM 1209 B 1 HETATM 23 C C2C HEM . . . E 2 -37.698 33.635 80.48 1 43.14 ? C2C HEM 1209 B 1 HETATM 24 C C3C HEM . . . E 2 -37.89 34.796 81.193 1 41.87 ? C3C HEM 1209 B 1 HETATM 25 C C4C HEM . . . E 2 -37.242 34.641 82.485 1 40.92 ? C4C HEM 1209 B 1 HETATM 26 C CMC HEM . . . E 2 -38.157 33.283 79.038 1 40.37 ? CMC HEM 1209 B 1 HETATM 27 C CAC HEM . . . E 2 -38.634 36.098 80.816 1 38.45 ? CAC HEM 1209 B 1 HETATM 28 C CBC HEM . . . E 2 -39.341 36.255 79.709 1 38.78 ? CBC HEM 1209 B 1 HETATM 29 C C1D HEM . . . E 2 -36.68 35.423 84.741 1 37.18 ? C1D HEM 1209 B 1 HETATM 30 C C2D HEM . . . E 2 -36.684 36.419 85.796 1 33.85 ? C2D HEM 1209 B 1 HETATM 31 C C3D HEM . . . E 2 -35.969 35.741 86.949 1 39.51 ? C3D HEM 1209 B 1 HETATM 32 C C4D HEM . . . E 2 -35.549 34.437 86.473 1 39.26 ? C4D HEM 1209 B 1 HETATM 33 C CMD HEM . . . E 2 -37.281 37.832 85.846 1 35.46 ? CMD HEM 1209 B 1 HETATM 34 C CAD HEM . . . E 2 -35.653 36.351 88.328 1 39.78 ? CAD HEM 1209 B 1 HETATM 35 C CBD HEM . . . E 2 -34.173 36.709 88.358 1 37.29 ? CBD HEM 1209 B 1 HETATM 36 C CGD HEM . . . E 2 -33.659 37.826 87.472 1 37.85 ? CGD HEM 1209 B 1 HETATM 37 O O1D HEM . . . E 2 -32.485 37.76 86.988 1 36.28 ? O1D HEM 1209 B 1 HETATM 38 O O2D HEM . . . E 2 -34.362 38.839 87.299 1 41.83 ? O2D HEM 1209 B 1 HETATM 39 N NA HEM . . . E 2 -34.277 31.924 85.512 1 40.95 ? NA HEM 1209 B 1 HETATM 40 N NB HEM . . . E 2 -34.986 31.057 82.799 1 40.06 ? NB HEM 1209 B 1 HETATM 41 N NC HEM . . . E 2 -36.692 33.382 82.529 1 42.67 ? NC HEM 1209 B 1 HETATM 42 N ND HEM . . . E 2 -36.005 34.291 85.157 1 37.75 ? ND HEM 1209 B 1 HETATM 43 FE FE HEM . . . E 2 -35.519 32.566 84.041 1 43.41 ? FE HEM 1209 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #