data_2W0F # _model_server_result.job_id s2QAwhtt4VLH80rSA1btEA _model_server_result.datetime_utc '2024-11-24 06:37:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w0f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1126}' # _entry.id 2W0F # _exptl.entry_id 2W0F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 144.254 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NONAN-1-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2W0F _cell.length_a 155.76 _cell.length_b 155.76 _cell.length_c 75.889 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W0F _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 3 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 145 A CYS 145 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf4 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 C NE2 HIS 124 C HIS 124 4_555 D CO CO . C CO 1125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc2 C NE2 HIS 124 C HIS 124 2_555 D CO CO . C CO 1125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc3 C NE2 HIS 124 C HIS 124 3_555 D CO CO . C CO 1125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc4 C NE2 HIS 124 C HIS 124 1_555 D CO CO . C CO 1125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc5 J K K . C K 1131 1_555 Q O HOH . C HOH 2020 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc6 J K K . C K 1131 1_555 Q O HOH . C HOH 2020 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc7 J K K . C K 1131 1_555 Q O HOH . C HOH 2020 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc8 J K K . C K 1131 1_555 Q O HOH . C HOH 2020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc9 K K K . C K 1132 1_555 Q O HOH . C HOH 2020 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.045 ? metalc ? metalc10 K K K . C K 1132 1_555 Q O HOH . C HOH 2020 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.045 ? metalc ? metalc11 K K K . C K 1132 1_555 Q O HOH . C HOH 2020 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.045 ? metalc ? metalc12 K K K . C K 1132 1_555 Q O HOH . C HOH 2020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.045 ? metalc ? metalc13 M K K . C K 1134 1_555 Q O HOH . C HOH 2020 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.154 ? metalc ? metalc14 M K K . C K 1134 1_555 Q O HOH . C HOH 2020 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.154 ? metalc ? metalc15 M K K . C K 1134 1_555 Q O HOH . C HOH 2020 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.154 ? metalc ? metalc16 M K K . C K 1134 1_555 Q O HOH . C HOH 2020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.154 ? # _chem_comp.formula 'C9 H20 O' _chem_comp.formula_weight 144.254 _chem_comp.id F09 _chem_comp.mon_nstd_flag . _chem_comp.name NONAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 F09 sing 202 n n C1 H11 F09 sing 203 n n C1 H12 F09 sing 204 n n C1 H13 F09 sing 205 n n C2 C3 F09 sing 206 n n C2 H21 F09 sing 207 n n C2 H22 F09 sing 208 n n C3 C4 F09 sing 209 n n C3 H31 F09 sing 210 n n C3 H32 F09 sing 211 n n C4 C5 F09 sing 212 n n C4 H41 F09 sing 213 n n C4 H42 F09 sing 214 n n C5 C6 F09 sing 215 n n C5 H51 F09 sing 216 n n C5 H52 F09 sing 217 n n C6 C7 F09 sing 218 n n C6 H61 F09 sing 219 n n C6 H62 F09 sing 220 n n C7 C8 F09 sing 221 n n C7 H71 F09 sing 222 n n C7 H72 F09 sing 223 n n C8 C9 F09 sing 224 n n C8 H81 F09 sing 225 n n C8 H82 F09 sing 226 n n C9 OXT F09 sing 227 n n C9 H91 F09 sing 228 n n C9 H92 F09 sing 229 n n OXT HXT F09 sing 230 n n # _atom_sites.entry_id 2W0F _atom_sites.fract_transf_matrix[1][1] 0.00642 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013177 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CO C 1 1125 1125 CO CO . E 5 F09 C 1 1126 1126 F09 F09 . F 6 DGA C 1 1127 1127 DGA DGA . G 7 HX0 C 1 1128 1128 HX0 HX0 . H 8 K C 1 1129 1129 K K . I 8 K C 1 1130 1130 K K . J 8 K C 1 1131 1131 K K . K 8 K C 1 1132 1132 K K . L 8 K C 1 1133 1133 K K . M 8 K C 1 1134 1134 K K . N 8 K C 1 1135 1135 K K . O 9 HOH A 1 2001 2001 HOH HOH . O 9 HOH A 2 2002 2002 HOH HOH . O 9 HOH A 3 2003 2003 HOH HOH . O 9 HOH A 4 2004 2004 HOH HOH . O 9 HOH A 5 2005 2005 HOH HOH . O 9 HOH A 6 2006 2006 HOH HOH . O 9 HOH A 7 2007 2007 HOH HOH . O 9 HOH A 8 2008 2008 HOH HOH . O 9 HOH A 9 2009 2009 HOH HOH . O 9 HOH A 10 2010 2010 HOH HOH . O 9 HOH A 11 2011 2011 HOH HOH . O 9 HOH A 12 2012 2012 HOH HOH . O 9 HOH A 13 2013 2013 HOH HOH . O 9 HOH A 14 2014 2014 HOH HOH . O 9 HOH A 15 2015 2015 HOH HOH . O 9 HOH A 16 2016 2016 HOH HOH . O 9 HOH A 17 2017 2017 HOH HOH . O 9 HOH A 18 2018 2018 HOH HOH . O 9 HOH A 19 2019 2019 HOH HOH . O 9 HOH A 20 2020 2020 HOH HOH . O 9 HOH A 21 2021 2021 HOH HOH . O 9 HOH A 22 2022 2022 HOH HOH . O 9 HOH A 23 2023 2023 HOH HOH . O 9 HOH A 24 2024 2024 HOH HOH . O 9 HOH A 25 2025 2025 HOH HOH . O 9 HOH A 26 2026 2026 HOH HOH . O 9 HOH A 27 2027 2027 HOH HOH . O 9 HOH A 28 2028 2028 HOH HOH . O 9 HOH A 29 2029 2029 HOH HOH . O 9 HOH A 30 2030 2030 HOH HOH . O 9 HOH A 31 2031 2031 HOH HOH . O 9 HOH A 32 2032 2032 HOH HOH . O 9 HOH A 33 2033 2033 HOH HOH . O 9 HOH A 34 2034 2034 HOH HOH . O 9 HOH A 35 2035 2035 HOH HOH . O 9 HOH A 36 2036 2036 HOH HOH . O 9 HOH A 37 2037 2037 HOH HOH . O 9 HOH A 38 2038 2038 HOH HOH . O 9 HOH A 39 2039 2039 HOH HOH . O 9 HOH A 40 2040 2040 HOH HOH . O 9 HOH A 41 2041 2041 HOH HOH . O 9 HOH A 42 2042 2042 HOH HOH . O 9 HOH A 43 2043 2043 HOH HOH . O 9 HOH A 44 2044 2044 HOH HOH . O 9 HOH A 45 2045 2045 HOH HOH . O 9 HOH A 46 2046 2046 HOH HOH . O 9 HOH A 47 2047 2047 HOH HOH . O 9 HOH A 48 2048 2048 HOH HOH . O 9 HOH A 49 2049 2049 HOH HOH . O 9 HOH A 50 2050 2050 HOH HOH . O 9 HOH A 51 2051 2051 HOH HOH . O 9 HOH A 52 2052 2052 HOH HOH . O 9 HOH A 53 2053 2053 HOH HOH . O 9 HOH A 54 2054 2054 HOH HOH . O 9 HOH A 55 2055 2055 HOH HOH . O 9 HOH A 56 2056 2056 HOH HOH . P 9 HOH B 1 2001 2001 HOH HOH . P 9 HOH B 2 2002 2002 HOH HOH . P 9 HOH B 3 2003 2003 HOH HOH . P 9 HOH B 4 2004 2004 HOH HOH . P 9 HOH B 5 2005 2005 HOH HOH . P 9 HOH B 6 2006 2006 HOH HOH . P 9 HOH B 7 2007 2007 HOH HOH . P 9 HOH B 8 2008 2008 HOH HOH . P 9 HOH B 9 2009 2009 HOH HOH . P 9 HOH B 10 2010 2010 HOH HOH . P 9 HOH B 11 2011 2011 HOH HOH . P 9 HOH B 12 2012 2012 HOH HOH . P 9 HOH B 13 2013 2013 HOH HOH . P 9 HOH B 14 2014 2014 HOH HOH . P 9 HOH B 15 2015 2015 HOH HOH . P 9 HOH B 16 2016 2016 HOH HOH . P 9 HOH B 17 2017 2017 HOH HOH . P 9 HOH B 18 2018 2018 HOH HOH . P 9 HOH B 19 2019 2019 HOH HOH . P 9 HOH B 20 2020 2020 HOH HOH . P 9 HOH B 21 2021 2021 HOH HOH . P 9 HOH B 22 2022 2022 HOH HOH . P 9 HOH B 23 2023 2023 HOH HOH . P 9 HOH B 24 2024 2024 HOH HOH . P 9 HOH B 25 2025 2025 HOH HOH . P 9 HOH B 26 2026 2026 HOH HOH . P 9 HOH B 27 2027 2027 HOH HOH . P 9 HOH B 28 2028 2028 HOH HOH . P 9 HOH B 29 2029 2029 HOH HOH . P 9 HOH B 30 2030 2030 HOH HOH . P 9 HOH B 31 2031 2031 HOH HOH . P 9 HOH B 32 2032 2032 HOH HOH . P 9 HOH B 33 2033 2033 HOH HOH . P 9 HOH B 34 2034 2034 HOH HOH . P 9 HOH B 35 2035 2035 HOH HOH . P 9 HOH B 36 2036 2036 HOH HOH . P 9 HOH B 37 2037 2037 HOH HOH . P 9 HOH B 38 2038 2038 HOH HOH . P 9 HOH B 39 2039 2039 HOH HOH . P 9 HOH B 40 2040 2040 HOH HOH . P 9 HOH B 41 2041 2041 HOH HOH . P 9 HOH B 42 2042 2042 HOH HOH . P 9 HOH B 43 2043 2043 HOH HOH . P 9 HOH B 44 2044 2044 HOH HOH . P 9 HOH B 45 2045 2045 HOH HOH . P 9 HOH B 46 2046 2046 HOH HOH . P 9 HOH B 47 2047 2047 HOH HOH . P 9 HOH B 48 2048 2048 HOH HOH . P 9 HOH B 49 2049 2049 HOH HOH . P 9 HOH B 50 2050 2050 HOH HOH . P 9 HOH B 51 2051 2051 HOH HOH . P 9 HOH B 52 2052 2052 HOH HOH . P 9 HOH B 53 2053 2053 HOH HOH . P 9 HOH B 54 2054 2054 HOH HOH . P 9 HOH B 55 2055 2055 HOH HOH . P 9 HOH B 56 2056 2056 HOH HOH . P 9 HOH B 57 2057 2057 HOH HOH . P 9 HOH B 58 2058 2058 HOH HOH . P 9 HOH B 59 2059 2059 HOH HOH . P 9 HOH B 60 2060 2060 HOH HOH . P 9 HOH B 61 2061 2061 HOH HOH . P 9 HOH B 62 2062 2062 HOH HOH . P 9 HOH B 63 2063 2063 HOH HOH . P 9 HOH B 64 2064 2064 HOH HOH . P 9 HOH B 65 2065 2065 HOH HOH . P 9 HOH B 66 2066 2066 HOH HOH . P 9 HOH B 67 2067 2067 HOH HOH . P 9 HOH B 68 2068 2068 HOH HOH . P 9 HOH B 69 2069 2069 HOH HOH . P 9 HOH B 70 2070 2070 HOH HOH . P 9 HOH B 71 2071 2071 HOH HOH . Q 9 HOH C 1 2001 2001 HOH HOH . Q 9 HOH C 2 2002 2002 HOH HOH . Q 9 HOH C 3 2003 2003 HOH HOH . Q 9 HOH C 4 2004 2004 HOH HOH . Q 9 HOH C 5 2005 2005 HOH HOH . Q 9 HOH C 6 2006 2006 HOH HOH . Q 9 HOH C 7 2007 2007 HOH HOH . Q 9 HOH C 8 2008 2008 HOH HOH . Q 9 HOH C 9 2009 2009 HOH HOH . Q 9 HOH C 10 2010 2010 HOH HOH . Q 9 HOH C 11 2011 2011 HOH HOH . Q 9 HOH C 12 2012 2012 HOH HOH . Q 9 HOH C 13 2013 2013 HOH HOH . Q 9 HOH C 14 2014 2014 HOH HOH . Q 9 HOH C 15 2015 2015 HOH HOH . Q 9 HOH C 16 2016 2016 HOH HOH . Q 9 HOH C 17 2017 2017 HOH HOH . Q 9 HOH C 18 2018 2018 HOH HOH . Q 9 HOH C 19 2019 2019 HOH HOH . Q 9 HOH C 20 2020 2020 HOH HOH . Q 9 HOH C 21 2021 2021 HOH HOH . Q 9 HOH C 22 2022 2022 HOH HOH . Q 9 HOH C 23 2023 2023 HOH HOH . Q 9 HOH C 24 2024 2024 HOH HOH . Q 9 HOH C 25 2025 2025 HOH HOH . Q 9 HOH C 26 2026 2026 HOH HOH . Q 9 HOH C 27 2027 2027 HOH HOH . Q 9 HOH C 28 2028 2028 HOH HOH . Q 9 HOH C 29 2029 2029 HOH HOH . Q 9 HOH C 30 2030 2030 HOH HOH . Q 9 HOH C 31 2031 2031 HOH HOH . Q 9 HOH C 32 2032 2032 HOH HOH . Q 9 HOH C 33 2033 2033 HOH HOH . Q 9 HOH C 34 2034 2034 HOH HOH . Q 9 HOH C 35 2035 2035 HOH HOH . Q 9 HOH C 36 2036 2036 HOH HOH . Q 9 HOH C 37 2037 2037 HOH HOH . Q 9 HOH C 38 2038 2038 HOH HOH . Q 9 HOH C 39 2039 2039 HOH HOH . Q 9 HOH C 40 2040 2040 HOH HOH . Q 9 HOH C 41 2041 2041 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 F09 . . . E 5 -2.227 -21.35 37.41 1 69.93 ? C1 F09 1126 C 1 HETATM 2 C C2 F09 . . . E 5 -1.081 -21.695 36.482 1 69.64 ? C2 F09 1126 C 1 HETATM 3 C C3 F09 . . . E 5 -1.596 -22.425 35.245 1 70.32 ? C3 F09 1126 C 1 HETATM 4 C C4 F09 . . . E 5 -0.59 -23.444 34.699 1 70.17 ? C4 F09 1126 C 1 HETATM 5 C C5 F09 . . . E 5 -0.418 -23.305 33.185 1 69.28 ? C5 F09 1126 C 1 HETATM 6 C C6 F09 . . . E 5 0.538 -24.359 32.641 1 69.5 ? C6 F09 1126 C 1 HETATM 7 C C7 F09 . . . E 5 0.58 -24.388 31.118 1 68.83 ? C7 F09 1126 C 1 HETATM 8 C C8 F09 . . . E 5 -0.31 -25.498 30.588 1 69.91 ? C8 F09 1126 C 1 HETATM 9 C C9 F09 . . . E 5 0.008 -25.753 29.133 1 72.2 ? C9 F09 1126 C 1 HETATM 10 O OXT F09 . . . E 5 -0.885 -25.941 28.312 1 73.53 ? OXT F09 1126 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 489 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #