data_2W0U # _model_server_result.job_id 98rNC-sxRziqKS5tnxGDeA _model_server_result.datetime_utc '2024-11-14 04:08:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w0u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1365}' # _entry.id 2W0U # _exptl.entry_id 2W0U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2W0U _cell.length_a 138.69 _cell.length_b 138.69 _cell.length_c 186.84 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W0U _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 4 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 PISA tetrameric 4 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1,2,3,4 B,G,H,N 2 1,2,3,4 C,I,J,O 3 1,2,3,4 D,K,L,P 4 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -y-1/2,x+1/2,z 0 -1 0 1 0 0 0 0 1 -69.345 69.345 0 3 'crystal symmetry operation' 4_445 y-1/2,-x-1/2,z 0 1 0 -1 0 0 0 0 1 -69.345 -69.345 0 4 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -138.69 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 104 n n N1 C10 FMN doub 105 n n C2 O2 FMN doub 106 n n C2 N3 FMN sing 107 n n N3 C4 FMN sing 108 n n N3 HN3 FMN sing 109 n n C4 O4 FMN doub 110 n n C4 C4A FMN sing 111 n n C4A N5 FMN doub 112 n n C4A C10 FMN sing 113 n n N5 C5A FMN sing 114 n n C5A C6 FMN doub 115 n y C5A C9A FMN sing 116 n y C6 C7 FMN sing 117 n y C6 H6 FMN sing 118 n n C7 C7M FMN sing 119 n n C7 C8 FMN doub 120 n y C7M HM71 FMN sing 121 n n C7M HM72 FMN sing 122 n n C7M HM73 FMN sing 123 n n C8 C8M FMN sing 124 n n C8 C9 FMN sing 125 n y C8M HM81 FMN sing 126 n n C8M HM82 FMN sing 127 n n C8M HM83 FMN sing 128 n n C9 C9A FMN doub 129 n y C9 H9 FMN sing 130 n n C9A N10 FMN sing 131 n n N10 C10 FMN sing 132 n n N10 C1' FMN sing 133 n n C1' C2' FMN sing 134 n n C1' "H1'1" FMN sing 135 n n C1' "H1'2" FMN sing 136 n n C2' O2' FMN sing 137 n n C2' C3' FMN sing 138 n n C2' H2' FMN sing 139 n n O2' HO2' FMN sing 140 n n C3' O3' FMN sing 141 n n C3' C4' FMN sing 142 n n C3' H3' FMN sing 143 n n O3' HO3' FMN sing 144 n n C4' O4' FMN sing 145 n n C4' C5' FMN sing 146 n n C4' H4' FMN sing 147 n n O4' HO4' FMN sing 148 n n C5' O5' FMN sing 149 n n C5' "H5'1" FMN sing 150 n n C5' "H5'2" FMN sing 151 n n O5' P FMN sing 152 n n P O1P FMN doub 153 n n P O2P FMN sing 154 n n P O3P FMN sing 155 n n O2P HOP2 FMN sing 156 n n O3P HOP3 FMN sing 157 n n # _atom_sites.entry_id 2W0U _atom_sites.fract_transf_matrix[1][1] 0.00721 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00721 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005352 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 C7C A 1 1364 1364 C7C C7C . F 3 FMN A 1 1365 1365 FMN FMN . G 2 C7C B 1 1364 1364 C7C C7C . H 3 FMN B 1 1365 1365 FMN FMN . I 2 C7C C 1 1364 1364 C7C C7C . J 3 FMN C 1 1365 1365 FMN FMN . K 2 C7C D 1 1364 1364 C7C C7C . L 3 FMN D 1 1365 1365 FMN FMN . M 4 HOH A 1 2001 2001 HOH HOH . M 4 HOH A 2 2002 2002 HOH HOH . M 4 HOH A 3 2003 2003 HOH HOH . M 4 HOH A 4 2004 2004 HOH HOH . M 4 HOH A 5 2005 2005 HOH HOH . M 4 HOH A 6 2006 2006 HOH HOH . N 4 HOH B 1 2001 2001 HOH HOH . N 4 HOH B 2 2002 2002 HOH HOH . N 4 HOH B 3 2003 2003 HOH HOH . N 4 HOH B 4 2004 2004 HOH HOH . N 4 HOH B 5 2005 2005 HOH HOH . N 4 HOH B 6 2006 2006 HOH HOH . N 4 HOH B 7 2007 2007 HOH HOH . N 4 HOH B 8 2008 2008 HOH HOH . N 4 HOH B 9 2009 2009 HOH HOH . N 4 HOH B 10 2010 2010 HOH HOH . N 4 HOH B 11 2011 2011 HOH HOH . N 4 HOH B 12 2012 2012 HOH HOH . O 4 HOH C 1 2001 2001 HOH HOH . O 4 HOH C 2 2002 2002 HOH HOH . O 4 HOH C 3 2003 2003 HOH HOH . O 4 HOH C 4 2004 2004 HOH HOH . O 4 HOH C 5 2005 2005 HOH HOH . O 4 HOH C 6 2006 2006 HOH HOH . O 4 HOH C 7 2007 2007 HOH HOH . O 4 HOH C 8 2008 2008 HOH HOH . P 4 HOH D 1 2001 2001 HOH HOH . P 4 HOH D 2 2002 2002 HOH HOH . P 4 HOH D 3 2003 2003 HOH HOH . P 4 HOH D 4 2004 2004 HOH HOH . P 4 HOH D 5 2005 2005 HOH HOH . P 4 HOH D 6 2006 2006 HOH HOH . P 4 HOH D 7 2007 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . J 3 -38.534 6.067 -60.147 1 32.22 ? N1 FMN 1365 C 1 HETATM 2 C C2 FMN . . . J 3 -37.24 5.948 -59.657 1 32.34 ? C2 FMN 1365 C 1 HETATM 3 O O2 FMN . . . J 3 -37.042 5.895 -58.433 1 30.85 ? O2 FMN 1365 C 1 HETATM 4 N N3 FMN . . . J 3 -36.178 5.886 -60.549 1 31.95 ? N3 FMN 1365 C 1 HETATM 5 C C4 FMN . . . J 3 -36.392 5.942 -61.918 1 31.94 ? C4 FMN 1365 C 1 HETATM 6 O O4 FMN . . . J 3 -35.458 5.711 -62.702 1 31.83 ? O4 FMN 1365 C 1 HETATM 7 C C4A FMN . . . J 3 -37.697 6.065 -62.406 1 31.87 ? C4A FMN 1365 C 1 HETATM 8 N N5 FMN . . . J 3 -37.922 6.125 -63.775 1 30.79 ? N5 FMN 1365 C 1 HETATM 9 C C5A FMN . . . J 3 -39.211 6.242 -64.256 1 30.9 ? C5A FMN 1365 C 1 HETATM 10 C C6 FMN . . . J 3 -39.44 6.295 -65.633 1 30.58 ? C6 FMN 1365 C 1 HETATM 11 C C7 FMN . . . J 3 -40.747 6.418 -66.121 1 30.05 ? C7 FMN 1365 C 1 HETATM 12 C C7M FMN . . . J 3 -40.93 6.676 -67.587 1 28.71 ? C7M FMN 1365 C 1 HETATM 13 C C8 FMN . . . J 3 -41.832 6.481 -65.224 1 29.65 ? C8 FMN 1365 C 1 HETATM 14 C C8M FMN . . . J 3 -43.223 6.835 -65.67 1 29.11 ? C8M FMN 1365 C 1 HETATM 15 C C9 FMN . . . J 3 -41.597 6.417 -63.858 1 29.8 ? C9 FMN 1365 C 1 HETATM 16 C C9A FMN . . . J 3 -40.294 6.306 -63.364 1 31.48 ? C9A FMN 1365 C 1 HETATM 17 N N10 FMN . . . J 3 -40.073 6.253 -61.988 1 32.24 ? N10 FMN 1365 C 1 HETATM 18 C C10 FMN . . . J 3 -38.772 6.125 -61.51 1 31.78 ? C10 FMN 1365 C 1 HETATM 19 C C1' FMN . . . J 3 -41.234 6.453 -61.037 1 32.15 ? C1' FMN 1365 C 1 HETATM 20 C C2' FMN . . . J 3 -41.418 7.947 -60.791 1 31.22 ? C2' FMN 1365 C 1 HETATM 21 O O2' FMN . . . J 3 -40.363 8.359 -59.96 1 34.01 ? O2' FMN 1365 C 1 HETATM 22 C C3' FMN . . . J 3 -42.693 8.32 -60.063 1 30.51 ? C3' FMN 1365 C 1 HETATM 23 O O3' FMN . . . J 3 -42.742 7.596 -58.854 1 31.72 ? O3' FMN 1365 C 1 HETATM 24 C C4' FMN . . . J 3 -43.954 8.064 -60.872 1 30 ? C4' FMN 1365 C 1 HETATM 25 O O4' FMN . . . J 3 -43.787 8.431 -62.223 1 30.89 ? O4' FMN 1365 C 1 HETATM 26 C C5' FMN . . . J 3 -45.104 8.887 -60.32 1 28.8 ? C5' FMN 1365 C 1 HETATM 27 O O5' FMN . . . J 3 -46.24 8.532 -61.066 1 27.96 ? O5' FMN 1365 C 1 HETATM 28 P P FMN . . . J 3 -46.834 9.467 -62.236 1 27.33 ? P FMN 1365 C 1 HETATM 29 O O1P FMN . . . J 3 -48.327 9.18 -62.308 1 25.78 ? O1P FMN 1365 C 1 HETATM 30 O O2P FMN . . . J 3 -46.094 9.157 -63.526 1 25.37 ? O2P FMN 1365 C 1 HETATM 31 O O3P FMN . . . J 3 -46.655 10.918 -61.837 1 27.39 ? O3P FMN 1365 C 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 31 #