data_2W16
#
_model_server_result.job_id            VuROKKKDSo8wH5qCzWgIrw 
_model_server_result.datetime_utc      '2024-11-15 21:50:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2w16 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":1}' 
#
_entry.id    2W16 
#
_exptl.entry_id    2W16 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              376.341 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1S)-1-CARBOXY-5-[(3-CARBOXYPROPANOYL)AMINO]-8,9-DIHYDROXY-1,2,3,4-TETRAHYDROPYRIMIDO[1,2-A]QUINOLIN-11-IUM 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          130.67 
_cell.angle_gamma         90 
_cell.entry_id            2W16 
_cell.length_a            195.22 
_cell.length_b            130.082 
_cell.length_c            141.783 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2W16 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,K 1 1 
B,C,L,M,N,O,P,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             P 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 P C15 PVE . C PVE 1 1_555 C N DSN 1 C DSN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.283 ? 
covale ? covale2 C C DSN 1 C DSN 3 1_555 C N ARG 2 C ARG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale3 C C ARG 2 C ARG 4 1_555 C N DSN 3 C DSN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 C C DSN 3 C DSN 5 1_555 C N FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale5 C C FHO 4 C FHO 6 1_555 C N LYS 5 C LYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale6 C C LYS 5 C LYS 7 1_555 C N FHO 6 C FHO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale7 C C FHO 6 C FHO 8 1_555 C N THR 7 C THR 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
metalc ? metalc1 P O25 PVE . C PVE 1 1_555 Q FE FE . C FE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc2 P O26 PVE . C PVE 1 1_555 Q FE FE . C FE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc3 Q FE FE . C FE 2 1_555 C NE FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? 
metalc ? metalc4 Q FE FE . C FE 2 1_555 C OZ FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc5 Q FE FE . C FE 2 1_555 C CZ FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? 
metalc ? metalc6 Q FE FE . C FE 2 1_555 C OH FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc7 Q FE FE . C FE 2 1_555 C NE FHO 6 C FHO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? 
metalc ? metalc8 Q FE FE . C FE 2 1_555 C OZ FHO 6 C FHO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc9 Q FE FE . C FE 2 1_555 C CZ FHO 6 C FHO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? 
metalc ? metalc10 Q FE FE . C FE 2 1_555 C OH FHO 6 C FHO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
#
_chem_comp.formula           'C17 H18 N3 O7 1' 
_chem_comp.formula_weight    376.341 
_chem_comp.id                PVE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1S)-1-CARBOXY-5-[(3-CARBOXYPROPANOYL)AMINO]-8,9-DIHYDROXY-1,2,3,4-TETRAHYDROPYRIMIDO[1,2-A]QUINOLIN-11-IUM 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O23 C22 PVE doub 363 n n 
C22 O24 PVE sing 364 n n 
C22 C21 PVE sing 365 n n 
C21 C20 PVE sing 366 n n 
C20 C18 PVE sing 367 n n 
C18 O19 PVE doub 368 n n 
C18 N17 PVE sing 369 n n 
N17 C3 PVE sing 370 n n 
C3 C4 PVE doub 371 n y 
C3 C2 PVE sing 372 n y 
C4 C10 PVE sing 373 n y 
C10 C5 PVE sing 374 n y 
C10 C9 PVE doub 375 n y 
C5 C6 PVE doub 376 n y 
C6 O25 PVE sing 377 n n 
C6 C7 PVE sing 378 n y 
C7 O26 PVE sing 379 n n 
C7 C8 PVE doub 380 n y 
C8 C9 PVE sing 381 n y 
C9 N1 PVE sing 382 n y 
N1 C14 PVE sing 383 n n 
N1 C2 PVE doub 384 n y 
C14 C15 PVE sing 385 n n 
C14 C13 PVE sing 386 n n 
C15 O16 PVE doub 387 n n 
C15 OXT PVE sing 388 n n 
C2 N11 PVE sing 389 n n 
N11 C12 PVE sing 390 n n 
C12 C13 PVE sing 391 n n 
O24 H24 PVE sing 392 n n 
C21 H211 PVE sing 393 n n 
C21 H212 PVE sing 394 n n 
C20 H201 PVE sing 395 n n 
C20 H202 PVE sing 396 n n 
N17 H17 PVE sing 397 n n 
C4 H4 PVE sing 398 n n 
C5 H5 PVE sing 399 n n 
O25 H25 PVE sing 400 n n 
O26 H26 PVE sing 401 n n 
C8 H8 PVE sing 402 n n 
C14 H14 PVE sing 403 n n 
C13 H131 PVE sing 404 n n 
C13 H132 PVE sing 405 n n 
OXT HOT PVE sing 406 n n 
N11 H11 PVE sing 407 n n 
C12 H121 PVE sing 408 n n 
C12 H122 PVE sing 409 n n 
#
_atom_sites.entry_id                     2W16 
_atom_sites.fract_transf_matrix[1][1]    0.005122 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004401 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007687 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009299 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 N8E A 1 1816 1816 N8E N8E . 
E 3 N8E A 1 1817 1817 N8E N8E . 
F 4 PO4 A 1 1818 1818 PO4 PO4 . 
G 4 PO4 A 1 1819 1819 PO4 PO4 . 
H 4 PO4 A 1 1820 1820 PO4 PO4 . 
I 4 PO4 A 1 1821 1821 PO4 PO4 . 
J 4 PO4 A 1 1822 1822 PO4 PO4 . 
K 4 PO4 A 1 1823 1823 PO4 PO4 . 
L 4 PO4 B 1 1817 1817 PO4 PO4 . 
M 4 PO4 B 1 1818 1818 PO4 PO4 . 
N 4 PO4 B 1 1819 1819 PO4 PO4 . 
O 4 PO4 B 1 1820 1820 PO4 PO4 . 
P 5 PVE C 1 1 1 PVE PVE . 
Q 6 FE C 1 2 2 FE FE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O23 PVE . . . P 5 -69.868 -26.617 24.001 1 49.14 ? O23 PVE 1 C 1 
HETATM 2 C C22 PVE . . . P 5 -68.656 -26.389 23.781 1 48.97 ? C22 PVE 1 C 1 
HETATM 3 O O24 PVE . . . P 5 -67.806 -26.21 24.7 1 48.83 ? O24 PVE 1 C 1 
HETATM 4 C C21 PVE . . . P 5 -68.211 -26.33 22.327 1 47.53 ? C21 PVE 1 C 1 
HETATM 5 C C20 PVE . . . P 5 -69.067 -27.229 21.432 1 45.6 ? C20 PVE 1 C 1 
HETATM 6 C C18 PVE . . . P 5 -68.754 -28.685 21.728 1 44.93 ? C18 PVE 1 C 1 
HETATM 7 O O19 PVE . . . P 5 -68.54 -29.034 22.888 1 44.62 ? O19 PVE 1 C 1 
HETATM 8 N N17 PVE . . . P 5 -68.725 -29.541 20.688 1 42.9 ? N17 PVE 1 C 1 
HETATM 9 C C3 PVE . . . P 5 -68.445 -30.905 20.904 1 40.95 ? C3 PVE 1 C 1 
HETATM 10 C C4 PVE . . . P 5 -67.153 -31.418 20.726 1 38.99 ? C4 PVE 1 C 1 
HETATM 11 C C10 PVE . . . P 5 -66.897 -32.781 20.957 1 36.66 ? C10 PVE 1 C 1 
HETATM 12 C C5 PVE . . . P 5 -65.595 -33.284 20.779 1 34.92 ? C5 PVE 1 C 1 
HETATM 13 C C6 PVE . . . P 5 -65.308 -34.626 20.995 1 34.03 ? C6 PVE 1 C 1 
HETATM 14 O O25 PVE . . . P 5 -64.08 -35.182 20.843 1 33.47 ? O25 PVE 1 C 1 
HETATM 15 C C7 PVE . . . P 5 -66.302 -35.477 21.392 1 35.39 ? C7 PVE 1 C 1 
HETATM 16 O O26 PVE . . . P 5 -65.867 -36.76 21.593 1 34.79 ? O26 PVE 1 C 1 
HETATM 17 C C8 PVE . . . P 5 -67.626 -34.994 21.578 1 36.56 ? C8 PVE 1 C 1 
HETATM 18 C C9 PVE . . . P 5 -67.946 -33.624 21.364 1 37.82 ? C9 PVE 1 C 1 
HETATM 19 N N1 PVE . . . P 5 -69.202 -33.083 21.56 1 40.27 ? N1 PVE 1 C 1 
HETATM 20 C C14 PVE . . . P 5 -70.34 -33.934 21.944 1 41.21 ? C14 PVE 1 C 1 
HETATM 21 C C15 PVE . . . P 5 -70.789 -34.576 20.633 1 43.52 ? C15 PVE 1 C 1 
HETATM 22 O O16 PVE . . . P 5 -70.826 -33.878 19.622 1 42.78 ? O16 PVE 1 C 1 
HETATM 23 C C2 PVE . . . P 5 -69.465 -31.759 21.324 1 40.83 ? C2 PVE 1 C 1 
HETATM 24 N N11 PVE . . . P 5 -70.711 -31.198 21.477 1 40.42 ? N11 PVE 1 C 1 
HETATM 25 C C12 PVE . . . P 5 -71.909 -31.864 21.977 1 39.16 ? C12 PVE 1 C 1 
HETATM 26 C C13 PVE . . . P 5 -71.469 -33.164 22.645 1 40.74 ? C13 PVE 1 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    40 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           26 
#