data_2W16 # _model_server_result.job_id u4VYMDquc0yptNdIWMUZxw _model_server_result.datetime_utc '2024-11-15 21:40:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w16 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1817}' # _entry.id 2W16 # _exptl.entry_id 2W16 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 350.491 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15-PENTAOXATRICOSAN-1-OL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 130.67 _cell.angle_gamma 90 _cell.entry_id 2W16 _cell.length_a 195.22 _cell.length_b 130.082 _cell.length_c 141.783 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W16 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K 1 1 B,C,L,M,N,O,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 P C15 PVE . C PVE 1 1_555 C N DSN 1 C DSN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.283 ? covale ? covale2 C C DSN 1 C DSN 3 1_555 C N ARG 2 C ARG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale3 C C ARG 2 C ARG 4 1_555 C N DSN 3 C DSN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 C C DSN 3 C DSN 5 1_555 C N FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 C C FHO 4 C FHO 6 1_555 C N LYS 5 C LYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 C C LYS 5 C LYS 7 1_555 C N FHO 6 C FHO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 C C FHO 6 C FHO 8 1_555 C N THR 7 C THR 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? metalc ? metalc1 P O25 PVE . C PVE 1 1_555 Q FE FE . C FE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc2 P O26 PVE . C PVE 1 1_555 Q FE FE . C FE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc3 Q FE FE . C FE 2 1_555 C NE FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc4 Q FE FE . C FE 2 1_555 C OZ FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc5 Q FE FE . C FE 2 1_555 C CZ FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc6 Q FE FE . C FE 2 1_555 C OH FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc7 Q FE FE . C FE 2 1_555 C NE FHO 6 C FHO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc8 Q FE FE . C FE 2 1_555 C OZ FHO 6 C FHO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc9 Q FE FE . C FE 2 1_555 C CZ FHO 6 C FHO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc10 Q FE FE . C FE 2 1_555 C OH FHO 6 C FHO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'C18 H38 O6' _chem_comp.formula_weight 350.491 _chem_comp.id N8E _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15-PENTAOXATRICOSAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'N-OCTYLPENTAOXYETHYLENE;PENTAETHYLENE GLYCOL MONOOCTYL ETHER;OCTYLPENTAGLYCOL N-OCTYLPENTAOXYETHYLENE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 N8E sing 258 n n C01 H011 N8E sing 259 n n C01 H012 N8E sing 260 n n C01 H013 N8E sing 261 n n C02 C03 N8E sing 262 n n C02 H021 N8E sing 263 n n C02 H022 N8E sing 264 n n C03 C04 N8E sing 265 n n C03 H031 N8E sing 266 n n C03 H032 N8E sing 267 n n C04 C05 N8E sing 268 n n C04 H041 N8E sing 269 n n C04 H042 N8E sing 270 n n C05 C06 N8E sing 271 n n C05 H051 N8E sing 272 n n C05 H052 N8E sing 273 n n C06 C07 N8E sing 274 n n C06 H061 N8E sing 275 n n C06 H062 N8E sing 276 n n C07 C08 N8E sing 277 n n C07 H071 N8E sing 278 n n C07 H072 N8E sing 279 n n C08 O09 N8E sing 280 n n C08 H081 N8E sing 281 n n C08 H082 N8E sing 282 n n O09 C10 N8E sing 283 n n C10 C11 N8E sing 284 n n C10 H101 N8E sing 285 n n C10 H102 N8E sing 286 n n C11 O12 N8E sing 287 n n C11 H111 N8E sing 288 n n C11 H112 N8E sing 289 n n O12 C13 N8E sing 290 n n C13 C14 N8E sing 291 n n C13 H131 N8E sing 292 n n C13 H132 N8E sing 293 n n C14 O15 N8E sing 294 n n C14 H141 N8E sing 295 n n C14 H142 N8E sing 296 n n O15 C16 N8E sing 297 n n C16 C17 N8E sing 298 n n C16 H161 N8E sing 299 n n C16 H162 N8E sing 300 n n C17 O18 N8E sing 301 n n C17 H171 N8E sing 302 n n C17 H172 N8E sing 303 n n O18 C19 N8E sing 304 n n C19 C20 N8E sing 305 n n C19 H191 N8E sing 306 n n C19 H192 N8E sing 307 n n C20 O21 N8E sing 308 n n C20 H201 N8E sing 309 n n C20 H202 N8E sing 310 n n O21 C22 N8E sing 311 n n C22 C23 N8E sing 312 n n C22 H221 N8E sing 313 n n C22 H222 N8E sing 314 n n C23 O24 N8E sing 315 n n C23 H231 N8E sing 316 n n C23 H232 N8E sing 317 n n O24 H24 N8E sing 318 n n # _atom_sites.entry_id 2W16 _atom_sites.fract_transf_matrix[1][1] 0.005122 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004401 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007687 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009299 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 N8E A 1 1816 1816 N8E N8E . E 3 N8E A 1 1817 1817 N8E N8E . F 4 PO4 A 1 1818 1818 PO4 PO4 . G 4 PO4 A 1 1819 1819 PO4 PO4 . H 4 PO4 A 1 1820 1820 PO4 PO4 . I 4 PO4 A 1 1821 1821 PO4 PO4 . J 4 PO4 A 1 1822 1822 PO4 PO4 . K 4 PO4 A 1 1823 1823 PO4 PO4 . L 4 PO4 B 1 1817 1817 PO4 PO4 . M 4 PO4 B 1 1818 1818 PO4 PO4 . N 4 PO4 B 1 1819 1819 PO4 PO4 . O 4 PO4 B 1 1820 1820 PO4 PO4 . P 5 PVE C 1 1 1 PVE PVE . Q 6 FE C 1 2 2 FE FE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 N8E . A . E 3 -30.528 8.56 23.916 0.5 12.48 ? C01 N8E 1817 A 1 HETATM 2 C C01 N8E . B . E 3 -45.054 -17.1 37.368 0.5 2 ? C01 N8E 1817 A 1 HETATM 3 C C02 N8E . A . E 3 -31.088 7.14 23.861 0.5 15 ? C02 N8E 1817 A 1 HETATM 4 C C02 N8E . B . E 3 -43.605 -16.673 37.453 0.5 2 ? C02 N8E 1817 A 1 HETATM 5 C C03 N8E . A . E 3 -31.461 6.562 25.23 0.5 16.41 ? C03 N8E 1817 A 1 HETATM 6 C C03 N8E . B . E 3 -43.27 -15.56 36.483 0.5 2 ? C03 N8E 1817 A 1 HETATM 7 C C04 N8E . A . E 3 -32.75 5.729 25.253 0.5 17.09 ? C04 N8E 1817 A 1 HETATM 8 C C04 N8E . B . E 3 -42.788 -14.275 37.134 0.5 2 ? C04 N8E 1817 A 1 HETATM 9 C C05 N8E . A . E 3 -33.263 5.377 26.66 0.5 18.29 ? C05 N8E 1817 A 1 HETATM 10 C C05 N8E . B . E 3 -43.038 -13.049 36.242 0.5 4.05 ? C05 N8E 1817 A 1 HETATM 11 C C06 N8E . A . E 3 -33.828 3.935 26.738 0.5 21.05 ? C06 N8E 1817 A 1 HETATM 12 C C06 N8E . B . E 3 -41.871 -12.061 36.132 0.5 9.22 ? C06 N8E 1817 A 1 HETATM 13 C C07 N8E . A . E 3 -34.213 3.418 28.132 0.5 22.21 ? C07 N8E 1817 A 1 HETATM 14 C C07 N8E . B . E 3 -42.318 -10.643 35.759 0.5 12.49 ? C07 N8E 1817 A 1 HETATM 15 C C08 N8E . A . E 3 -35.483 2.543 28.11 0.5 26.4 ? C08 N8E 1817 A 1 HETATM 16 C C08 N8E . B . E 3 -41.166 -9.636 35.679 0.5 16.25 ? C08 N8E 1817 A 1 HETATM 17 O O09 N8E . A . E 3 -35.185 1.131 27.97 0.5 30.23 ? O09 N8E 1817 A 1 HETATM 18 O O09 N8E . B . E 3 -40.467 -9.708 34.419 0.5 21.84 ? O09 N8E 1817 A 1 HETATM 19 C C10 N8E . A . E 3 -36.238 0.228 28.351 0.5 29.91 ? C10 N8E 1817 A 1 HETATM 20 C C10 N8E . B . E 3 -39.703 -8.532 34.064 0.5 22.51 ? C10 N8E 1817 A 1 HETATM 21 C C11 N8E . A . E 3 -35.867 -1.241 28.07 0.5 29.96 ? C11 N8E 1817 A 1 HETATM 22 C C11 N8E . B . E 3 -38.881 -8.816 32.798 0.5 23.85 ? C11 N8E 1817 A 1 HETATM 23 O O12 N8E . A . E 3 -37.026 -2.071 27.808 0.5 28.43 ? O12 N8E 1817 A 1 HETATM 24 O O12 N8E . B . E 3 -37.64 -8.08 32.749 0.5 24.65 ? O12 N8E 1817 A 1 HETATM 25 C C13 N8E . A . E 3 -36.903 -2.827 26.598 0.5 25.26 ? C13 N8E 1817 A 1 HETATM 26 C C13 N8E . B . E 3 -36.579 -8.802 32.094 0.5 20.86 ? C13 N8E 1817 A 1 HETATM 27 C C14 N8E . A . E 3 -37.348 -4.268 26.798 0.5 23.56 ? C14 N8E 1817 A 1 HETATM 28 C C14 N8E . B . E 3 -35.354 -7.917 31.918 0.5 18.15 ? C14 N8E 1817 A 1 HETATM 29 O O15 N8E . A . E 3 -36.644 -5.148 25.927 0.5 21.36 ? O15 N8E 1817 A 1 HETATM 30 O O15 N8E . B . E 3 -34.478 -8.493 30.955 0.5 16.95 ? O15 N8E 1817 A 1 HETATM 31 C C16 N8E . A . E 3 -36.452 -6.405 26.576 0.5 22.48 ? C16 N8E 1817 A 1 HETATM 32 C C16 N8E . B . E 3 -34.604 -7.929 29.647 0.5 17.43 ? C16 N8E 1817 A 1 HETATM 33 C C17 N8E . A . E 3 -35.086 -7.039 26.315 0.5 22.35 ? C17 N8E 1817 A 1 HETATM 34 C C17 N8E . B . E 3 -33.963 -8.865 28.632 0.5 17.08 ? C17 N8E 1817 A 1 HETATM 35 O O18 N8E . A . E 3 -35.233 -8.454 26.124 0.5 23.2 ? O18 N8E 1817 A 1 HETATM 36 O O18 N8E . B . E 3 -33.893 -8.327 27.304 0.5 19.09 ? O18 N8E 1817 A 1 HETATM 37 C C19 N8E . A . E 3 -34.072 -9.118 25.581 0.5 22.75 ? C19 N8E 1817 A 1 HETATM 38 C C19 N8E . B . E 3 -33.401 -9.337 26.38 0.5 20.28 ? C19 N8E 1817 A 1 HETATM 39 C C20 N8E . A . E 3 -34.383 -10.079 24.426 0.5 21.34 ? C20 N8E 1817 A 1 HETATM 40 C C20 N8E . B . E 3 -32.47 -8.831 25.258 0.5 20.24 ? C20 N8E 1817 A 1 HETATM 41 O O21 N8E . A . E 3 -34.072 -11.454 24.718 0.5 20.84 ? O21 N8E 1817 A 1 HETATM 42 O O21 N8E . B . E 3 -31.394 -9.752 24.955 0.5 19.67 ? O21 N8E 1817 A 1 HETATM 43 C C22 N8E . A . E 3 -33.84 -12.264 23.549 0.5 18.52 ? C22 N8E 1817 A 1 HETATM 44 C C22 N8E . B . E 3 -31.24 -10.154 23.567 0.5 15.71 ? C22 N8E 1817 A 1 HETATM 45 C C23 N8E . A . E 3 -34.098 -13.764 23.769 0.5 17.27 ? C23 N8E 1817 A 1 HETATM 46 C C23 N8E . B . E 3 -30.172 -9.359 22.8 0.5 10.64 ? C23 N8E 1817 A 1 HETATM 47 O O24 N8E . A . E 3 -33.36 -14.627 22.871 0.5 15.46 ? O24 N8E 1817 A 1 HETATM 48 O O24 N8E . B . E 3 -29.57 -10.111 21.732 0.5 6.02 ? O24 N8E 1817 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #