data_2W17 # _model_server_result.job_id RpgzLRHknu_tDs76rp_1oA _model_server_result.datetime_utc '2024-11-23 00:42:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w17 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1300}' # _entry.id 2W17 # _exptl.entry_id 2W17 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 451.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-{[(3S)-3-(dimethylamino)pyrrolidin-1-yl]carbonyl}phenyl)-5-fluoro-4-[2-methyl-1-(1-methylethyl)-1H-imidazol-5-yl]pyrimidin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2W17 _cell.length_a 53.542 _cell.length_b 71.824 _cell.length_c 71.771 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W17 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id ACE _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ACE _struct_conn.ptnr1_auth_seq_id 0 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id MET _struct_conn.ptnr2_label_seq_id 2 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MET _struct_conn.ptnr2_auth_seq_id 1 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.346 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H30 F N7 O' _chem_comp.formula_weight 451.54 _chem_comp.id I19 _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-{[(3S)-3-(dimethylamino)pyrrolidin-1-yl]carbonyl}phenyl)-5-fluoro-4-[2-methyl-1-(1-methylethyl)-1H-imidazol-5-yl]pyrimidin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 I19 sing 164 n n C2 C3 I19 sing 165 n n C2 N1 I19 sing 166 n n N1 C4 I19 sing 167 n y N1 C7 I19 sing 168 n y C4 C5 I19 sing 169 n n C4 N2 I19 doub 170 n y N2 C6 I19 sing 171 n y C6 C7 I19 doub 172 n y C7 C8 I19 sing 173 n y C8 N3 I19 sing 174 n y C8 C24 I19 doub 175 n y N3 C9 I19 doub 176 n y C9 N4 I19 sing 177 n n C9 N7 I19 sing 178 n y N4 C10 I19 sing 179 n n C10 C11 I19 sing 180 n y C10 C15 I19 doub 181 n y C11 C12 I19 doub 182 n y C12 C13 I19 sing 183 n y C13 C14 I19 doub 184 n y C13 C16 I19 sing 185 n n C14 C15 I19 sing 186 n y C16 O1 I19 doub 187 n n C16 N5 I19 sing 188 n n N5 C17 I19 sing 189 n n N5 C20 I19 sing 190 n n C17 C18 I19 sing 191 n n C18 C19 I19 sing 192 n n C19 C20 I19 sing 193 n n C19 N6 I19 sing 194 n n N6 C21 I19 sing 195 n n N6 C22 I19 sing 196 n n N7 C23 I19 doub 197 n y C23 C24 I19 sing 198 n y C24 F1 I19 sing 199 n n C1 H11C I19 sing 200 n n C1 H12C I19 sing 201 n n C1 H13C I19 sing 202 n n C2 H2 I19 sing 203 n n C3 H31C I19 sing 204 n n C3 H32C I19 sing 205 n n C3 H33C I19 sing 206 n n C5 H51C I19 sing 207 n n C5 H52C I19 sing 208 n n C5 H53C I19 sing 209 n n C6 H6 I19 sing 210 n n N4 H4 I19 sing 211 n n C11 H11 I19 sing 212 n n C15 H15 I19 sing 213 n n C12 H12 I19 sing 214 n n C14 H14 I19 sing 215 n n C17 H171 I19 sing 216 n n C17 H172 I19 sing 217 n n C20 H201 I19 sing 218 n n C20 H202 I19 sing 219 n n C18 H181 I19 sing 220 n n C18 H182 I19 sing 221 n n C19 H19 I19 sing 222 n n C21 H211 I19 sing 223 n n C21 H212 I19 sing 224 n n C21 H213 I19 sing 225 n n C22 H221 I19 sing 226 n n C22 H222 I19 sing 227 n n C22 H223 I19 sing 228 n n C23 H23 I19 sing 229 n n # _atom_sites.entry_id 2W17 _atom_sites.fract_transf_matrix[1][1] 0.018677 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013923 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 1299 1299 ACT ACT . C 3 I19 A 1 1300 1300 I19 I19 . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . D 4 HOH A 80 2080 2080 HOH HOH . D 4 HOH A 81 2081 2081 HOH HOH . D 4 HOH A 82 2082 2082 HOH HOH . D 4 HOH A 83 2083 2083 HOH HOH . D 4 HOH A 84 2084 2084 HOH HOH . D 4 HOH A 85 2085 2085 HOH HOH . D 4 HOH A 86 2086 2086 HOH HOH . D 4 HOH A 87 2087 2087 HOH HOH . D 4 HOH A 88 2088 2088 HOH HOH . D 4 HOH A 89 2089 2089 HOH HOH . D 4 HOH A 90 2090 2090 HOH HOH . D 4 HOH A 91 2091 2091 HOH HOH . D 4 HOH A 92 2092 2092 HOH HOH . D 4 HOH A 93 2093 2093 HOH HOH . D 4 HOH A 94 2094 2094 HOH HOH . D 4 HOH A 95 2095 2095 HOH HOH . D 4 HOH A 96 2096 2096 HOH HOH . D 4 HOH A 97 2097 2097 HOH HOH . D 4 HOH A 98 2098 2098 HOH HOH . D 4 HOH A 99 2099 2099 HOH HOH . D 4 HOH A 100 2100 2100 HOH HOH . D 4 HOH A 101 2101 2101 HOH HOH . D 4 HOH A 102 2102 2102 HOH HOH . D 4 HOH A 103 2103 2103 HOH HOH . D 4 HOH A 104 2104 2104 HOH HOH . D 4 HOH A 105 2105 2105 HOH HOH . D 4 HOH A 106 2106 2106 HOH HOH . D 4 HOH A 107 2107 2107 HOH HOH . D 4 HOH A 108 2108 2108 HOH HOH . D 4 HOH A 109 2109 2109 HOH HOH . D 4 HOH A 110 2110 2110 HOH HOH . D 4 HOH A 111 2111 2111 HOH HOH . D 4 HOH A 112 2112 2112 HOH HOH . D 4 HOH A 113 2113 2113 HOH HOH . D 4 HOH A 114 2114 2114 HOH HOH . D 4 HOH A 115 2115 2115 HOH HOH . D 4 HOH A 116 2116 2116 HOH HOH . D 4 HOH A 117 2117 2117 HOH HOH . D 4 HOH A 118 2118 2118 HOH HOH . D 4 HOH A 119 2119 2119 HOH HOH . D 4 HOH A 120 2120 2120 HOH HOH . D 4 HOH A 121 2121 2121 HOH HOH . D 4 HOH A 122 2122 2122 HOH HOH . D 4 HOH A 123 2123 2123 HOH HOH . D 4 HOH A 124 2124 2124 HOH HOH . D 4 HOH A 125 2125 2125 HOH HOH . D 4 HOH A 126 2126 2126 HOH HOH . D 4 HOH A 127 2127 2127 HOH HOH . D 4 HOH A 128 2128 2128 HOH HOH . D 4 HOH A 129 2129 2129 HOH HOH . D 4 HOH A 130 2130 2130 HOH HOH . D 4 HOH A 131 2131 2131 HOH HOH . D 4 HOH A 132 2132 2132 HOH HOH . D 4 HOH A 133 2133 2133 HOH HOH . D 4 HOH A 134 2134 2134 HOH HOH . D 4 HOH A 135 2135 2135 HOH HOH . D 4 HOH A 136 2136 2136 HOH HOH . D 4 HOH A 137 2137 2137 HOH HOH . D 4 HOH A 138 2138 2138 HOH HOH . D 4 HOH A 139 2139 2139 HOH HOH . D 4 HOH A 140 2140 2140 HOH HOH . D 4 HOH A 141 2141 2141 HOH HOH . D 4 HOH A 142 2142 2142 HOH HOH . D 4 HOH A 143 2143 2143 HOH HOH . D 4 HOH A 144 2144 2144 HOH HOH . D 4 HOH A 145 2145 2145 HOH HOH . D 4 HOH A 146 2146 2146 HOH HOH . D 4 HOH A 147 2147 2147 HOH HOH . D 4 HOH A 148 2148 2148 HOH HOH . D 4 HOH A 149 2149 2149 HOH HOH . D 4 HOH A 150 2150 2150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I19 . . . C 3 0.174 28.28 11.709 1 41.49 ? C1 I19 1300 A 1 HETATM 2 C C2 I19 . . . C 3 -0.209 28.23 10.244 1 44.8 ? C2 I19 1300 A 1 HETATM 3 C C3 I19 . . . C 3 -0.297 26.812 9.703 1 42.38 ? C3 I19 1300 A 1 HETATM 4 N N1 I19 . . . C 3 -1.418 29.013 10.059 1 46.22 ? N1 I19 1300 A 1 HETATM 5 C C4 I19 . . . C 3 -2.587 28.746 10.661 1 47.19 ? C4 I19 1300 A 1 HETATM 6 C C5 I19 . . . C 3 -2.919 27.621 11.588 1 47.84 ? C5 I19 1300 A 1 HETATM 7 N N2 I19 . . . C 3 -3.434 29.698 10.275 1 48.18 ? N2 I19 1300 A 1 HETATM 8 C C6 I19 . . . C 3 -2.83 30.594 9.411 1 47.74 ? C6 I19 1300 A 1 HETATM 9 C C7 I19 . . . C 3 -1.529 30.163 9.264 1 46.82 ? C7 I19 1300 A 1 HETATM 10 C C8 I19 . . . C 3 -0.498 30.819 8.397 1 44.95 ? C8 I19 1300 A 1 HETATM 11 N N3 I19 . . . C 3 0.472 30.052 7.883 1 43.93 ? N3 I19 1300 A 1 HETATM 12 C C9 I19 . . . C 3 1.393 30.657 7.119 1 44.39 ? C9 I19 1300 A 1 HETATM 13 N N4 I19 . . . C 3 2.459 29.956 6.522 1 43.69 ? N4 I19 1300 A 1 HETATM 14 C C10 I19 . . . C 3 3.176 28.82 6.934 1 42.38 ? C10 I19 1300 A 1 HETATM 15 C C11 I19 . . . C 3 2.952 28.162 8.123 1 43.08 ? C11 I19 1300 A 1 HETATM 16 C C12 I19 . . . C 3 3.704 27.054 8.459 1 43.34 ? C12 I19 1300 A 1 HETATM 17 C C13 I19 . . . C 3 4.678 26.603 7.588 1 43.1 ? C13 I19 1300 A 1 HETATM 18 C C14 I19 . . . C 3 4.941 27.245 6.391 1 42.32 ? C14 I19 1300 A 1 HETATM 19 C C15 I19 . . . C 3 4.17 28.355 6.087 1 41.96 ? C15 I19 1300 A 1 HETATM 20 C C16 I19 . . . C 3 5.504 25.454 7.926 1 43.74 ? C16 I19 1300 A 1 HETATM 21 O O1 I19 . . . C 3 6.709 25.662 7.96 1 44.13 ? O1 I19 1300 A 1 HETATM 22 N N5 I19 . . . C 3 4.945 24.22 8.153 1 45.61 ? N5 I19 1300 A 1 HETATM 23 C C17 I19 . . . C 3 3.629 23.973 8.678 1 46.58 ? C17 I19 1300 A 1 HETATM 24 C C18 I19 . . . C 3 3.659 22.501 9.075 1 49.25 ? C18 I19 1300 A 1 HETATM 25 C C19 I19 . . . C 3 5.124 22.12 9.256 1 49.44 ? C19 I19 1300 A 1 HETATM 26 C C20 I19 . . . C 3 5.892 23.203 8.551 1 47.62 ? C20 I19 1300 A 1 HETATM 27 N N6 I19 . . . C 3 5.54 22.192 10.697 1 52.17 ? N6 I19 1300 A 1 HETATM 28 C C21 I19 . . . C 3 4.497 21.801 11.684 1 49.52 ? C21 I19 1300 A 1 HETATM 29 C C22 I19 . . . C 3 6.765 21.379 10.948 1 52.27 ? C22 I19 1300 A 1 HETATM 30 N N7 I19 . . . C 3 1.385 31.968 6.837 1 44.97 ? N7 I19 1300 A 1 HETATM 31 C C23 I19 . . . C 3 0.411 32.708 7.359 1 44.14 ? C23 I19 1300 A 1 HETATM 32 C C24 I19 . . . C 3 -0.561 32.179 8.154 1 45.43 ? C24 I19 1300 A 1 HETATM 33 F F1 I19 . . . C 3 -1.501 33.005 8.641 1 47.09 ? F1 I19 1300 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 33 #