data_2W1D # _model_server_result.job_id pRq2iXH3rOkDPUxL2JoAdQ _model_server_result.datetime_utc '2024-11-22 20:24:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w1d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1391}' # _entry.id 2W1D # _exptl.entry_id 2W1D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 184.197 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(1H-pyrazol-3-yl)-1H-benzimidazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2W1D _cell.length_a 83.008 _cell.length_b 83.008 _cell.length_c 169.719 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W1D _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H8 N4' _chem_comp.formula_weight 184.197 _chem_comp.id L0D _chem_comp.mon_nstd_flag . _chem_comp.name 2-(1H-pyrazol-3-yl)-1H-benzimidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 L0D doub 171 n y C1 N5 L0D sing 172 n y C1 H1 L0D sing 173 n n C2 C3 L0D sing 174 n y C2 H2 L0D sing 175 n n C3 N4 L0D doub 176 n y C3 C7 L0D sing 177 n y N4 N5 L0D sing 178 n y N5 HN5 L0D sing 179 n n C7 N8 L0D doub 180 n y C7 N15 L0D sing 181 n y N8 C9 L0D sing 182 n y C9 C10 L0D doub 183 n y C9 C14 L0D sing 184 n y C10 C11 L0D sing 185 n y C10 H10 L0D sing 186 n n C11 C12 L0D doub 187 n y C11 H11 L0D sing 188 n n C12 C13 L0D sing 189 n y C12 H12 L0D sing 190 n n C13 C14 L0D doub 191 n y C13 H13 L0D sing 192 n n C14 N15 L0D sing 193 n y N15 HN15 L0D sing 194 n n # _atom_sites.entry_id 2W1D _atom_sites.fract_transf_matrix[1][1] 0.012047 _atom_sites.fract_transf_matrix[1][2] 0.006955 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013911 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005892 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id L0D _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1391 _pdbx_nonpoly_scheme.auth_seq_num 1391 _pdbx_nonpoly_scheme.pdb_mon_id L0D _pdbx_nonpoly_scheme.auth_mon_id L0D _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 L0D . . . B 2 4.908 30.252 8.738 1 62.5 ? C1 L0D 1391 A 1 HETATM 2 C C2 L0D . . . B 2 4.716 30.582 7.453 1 63.83 ? C2 L0D 1391 A 1 HETATM 3 C C3 L0D . . . B 2 3.971 31.724 7.442 1 63.91 ? C3 L0D 1391 A 1 HETATM 4 N N4 L0D . . . B 2 3.69 32.109 8.691 1 65.11 ? N4 L0D 1391 A 1 HETATM 5 N N5 L0D . . . B 2 4.283 31.183 9.474 1 62.09 ? N5 L0D 1391 A 1 HETATM 6 C C7 L0D . . . B 2 3.486 32.479 6.307 1 62.4 ? C7 L0D 1391 A 1 HETATM 7 N N8 L0D . . . B 2 3.728 32.212 5.039 1 63.39 ? N8 L0D 1391 A 1 HETATM 8 C C9 L0D . . . B 2 3.086 33.148 4.284 1 66.85 ? C9 L0D 1391 A 1 HETATM 9 C C10 L0D . . . B 2 3.01 33.336 2.913 1 68.63 ? C10 L0D 1391 A 1 HETATM 10 C C11 L0D . . . B 2 2.279 34.383 2.399 1 68.09 ? C11 L0D 1391 A 1 HETATM 11 C C12 L0D . . . B 2 1.616 35.249 3.244 1 68.09 ? C12 L0D 1391 A 1 HETATM 12 C C13 L0D . . . B 2 1.683 35.073 4.604 1 64.9 ? C13 L0D 1391 A 1 HETATM 13 C C14 L0D . . . B 2 2.418 34.022 5.133 1 67.1 ? C14 L0D 1391 A 1 HETATM 14 N N15 L0D . . . B 2 2.693 33.57 6.386 1 65.88 ? N15 L0D 1391 A 1 HETATM 15 H HN5 L0D . . . B 2 4.243 31.223 10.307 1 63.05 ? HN5 L0D 1391 A 1 HETATM 16 H HN15 L0D . . . B 2 2.395 33.933 7.138 1 65.24 ? HN15 L0D 1391 A 1 HETATM 17 H H1 L0D . . . B 2 5.388 29.513 9.088 1 62.75 ? H1 L0D 1391 A 1 HETATM 18 H H2 L0D . . . B 2 5.035 30.116 6.692 1 63.47 ? H2 L0D 1391 A 1 HETATM 19 H H10 L0D . . . B 2 3.467 32.738 2.328 1 67.97 ? H10 L0D 1391 A 1 HETATM 20 H H11 L0D . . . B 2 2.229 34.509 1.455 1 68.24 ? H11 L0D 1391 A 1 HETATM 21 H H12 L0D . . . B 2 1.111 35.972 2.882 1 67.19 ? H12 L0D 1391 A 1 HETATM 22 H H13 L0D . . . B 2 1.227 35.672 5.187 1 66.41 ? H13 L0D 1391 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #