data_2W1E # _model_server_result.job_id zkqUCckZfHLHnY-Vb6Elpw _model_server_result.datetime_utc '2025-04-28 21:18:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w1e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1390}' # _entry.id 2W1E # _exptl.entry_id 2W1E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.472 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(2-{4-[(PHENYLCARBAMOYL)AMINO]-1H-PYRAZOL-3-YL}-1H-BENZIMIDAZOL-5-YL)METHYL]MORPHOLIN-4-IUM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2W1E _cell.length_a 83.086 _cell.length_b 83.086 _cell.length_c 168.133 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W1E _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H24 N7 O2 1' _chem_comp.formula_weight 418.472 _chem_comp.id L0E _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(2-{4-[(PHENYLCARBAMOYL)AMINO]-1H-PYRAZOL-3-YL}-1H-BENZIMIDAZOL-5-YL)METHYL]MORPHOLIN-4-IUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 O1 L0E doub 173 n n N28 C2 L0E sing 174 n n C2 N3 L0E sing 175 n n H35 N3 L0E sing 176 n n N3 C4 L0E sing 177 n n C9 C4 L0E sing 178 n y C4 C5 L0E doub 179 n y C5 H36 L0E sing 180 n n C5 N6 L0E sing 181 n y N8 N6 L0E sing 182 n y N6 H7 L0E sing 183 n n C9 N8 L0E doub 184 n y C10 C9 L0E sing 185 n y N11 C10 L0E doub 186 n y C10 N26 L0E sing 187 n y C12 N11 L0E sing 188 n y C13 C12 L0E doub 189 n y C12 C25 L0E sing 190 n y C14 C13 L0E sing 191 n y H37 C13 L0E sing 192 n n C15 C14 L0E sing 193 n n C14 C23 L0E doub 194 n y N16 C15 L0E sing 195 n n H38 C15 L0E sing 196 n n H39 C15 L0E sing 197 n n H17 N16 L0E sing 198 n n N16 C18 L0E sing 199 n n N16 C22 L0E sing 200 n n C19 C18 L0E sing 201 n n H41 C18 L0E sing 202 n n C18 H40 L0E sing 203 n n H43 C19 L0E sing 204 n n C19 H42 L0E sing 205 n n C19 O20 L0E sing 206 n n C21 O20 L0E sing 207 n n H45 C21 L0E sing 208 n n C21 H44 L0E sing 209 n n C21 C22 L0E sing 210 n n C22 H46 L0E sing 211 n n C22 H47 L0E sing 212 n n H48 C23 L0E sing 213 n n C23 C24 L0E sing 214 n y C24 H49 L0E sing 215 n n C24 C25 L0E doub 216 n y C25 N26 L0E sing 217 n y N26 H27 L0E sing 218 n n C29 N28 L0E sing 219 n n H50 N28 L0E sing 220 n n C30 C29 L0E doub 221 n y C34 C29 L0E sing 222 n y C31 C30 L0E sing 223 n y C30 H51 L0E sing 224 n n H52 C31 L0E sing 225 n n C32 C31 L0E doub 226 n y H53 C32 L0E sing 227 n n C32 C33 L0E sing 228 n y H54 C33 L0E sing 229 n n C33 C34 L0E doub 230 n y C34 H55 L0E sing 231 n n # _atom_sites.entry_id 2W1E _atom_sites.fract_transf_matrix[1][1] 0.012036 _atom_sites.fract_transf_matrix[1][2] 0.006949 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013898 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 L0E A 1 1390 1390 L0E L0E . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 L0E . . . B 2 6.192 27.907 7.415 1 95.24 ? O1 L0E 1390 A 1 HETATM 2 C C2 L0E . . . B 2 6.08 28.613 6.441 1 91.6 ? C2 L0E 1390 A 1 HETATM 3 N N3 L0E . . . B 2 5.468 29.827 6.47 1 86.68 ? N3 L0E 1390 A 1 HETATM 4 C C4 L0E . . . B 2 4.932 30.467 7.566 1 79.76 ? C4 L0E 1390 A 1 HETATM 5 C C5 L0E . . . B 2 5.093 30.211 8.88 1 77.2 ? C5 L0E 1390 A 1 HETATM 6 N N6 L0E . . . B 2 4.359 31.117 9.547 1 73.83 ? N6 L0E 1390 A 1 HETATM 7 N N8 L0E . . . B 2 3.724 31.958 8.711 1 73.11 ? N8 L0E 1390 A 1 HETATM 8 C C9 L0E . . . B 2 4.082 31.558 7.516 1 76.91 ? C9 L0E 1390 A 1 HETATM 9 C C10 L0E . . . B 2 3.551 32.253 6.379 1 78.17 ? C10 L0E 1390 A 1 HETATM 10 N N11 L0E . . . B 2 3.527 31.803 5.166 1 80.83 ? N11 L0E 1390 A 1 HETATM 11 C C12 L0E . . . B 2 2.939 32.727 4.384 1 85.38 ? C12 L0E 1390 A 1 HETATM 12 C C13 L0E . . . B 2 2.675 32.742 3.027 1 90.68 ? C13 L0E 1390 A 1 HETATM 13 C C14 L0E . . . B 2 2.041 33.83 2.436 1 95.68 ? C14 L0E 1390 A 1 HETATM 14 C C15 L0E . . . B 2 1.762 33.839 0.955 1 101.9 ? C15 L0E 1390 A 1 HETATM 15 N N16 L0E . . . B 2 2.8 34.616 0.198 1 106.44 ? N16 L0E 1390 A 1 HETATM 16 C C18 L0E . . . B 2 4.109 33.91 0.208 1 106.85 ? C18 L0E 1390 A 1 HETATM 17 C C19 L0E . . . B 2 5.117 34.717 -0.585 1 106.73 ? C19 L0E 1390 A 1 HETATM 18 O O20 L0E . . . B 2 5.263 36.05 -0.054 1 107.67 ? O20 L0E 1390 A 1 HETATM 19 C C21 L0E . . . B 2 4.001 36.731 -0.06 1 108.57 ? C21 L0E 1390 A 1 HETATM 20 C C22 L0E . . . B 2 2.98 35.978 0.769 1 108.33 ? C22 L0E 1390 A 1 HETATM 21 C C23 L0E . . . B 2 1.68 34.917 3.243 1 92.1 ? C23 L0E 1390 A 1 HETATM 22 C C24 L0E . . . B 2 1.943 34.9 4.596 1 88.36 ? C24 L0E 1390 A 1 HETATM 23 C C25 L0E . . . B 2 2.573 33.809 5.17 1 83.67 ? C25 L0E 1390 A 1 HETATM 24 N N26 L0E . . . B 2 2.974 33.466 6.419 1 80.53 ? N26 L0E 1390 A 1 HETATM 25 N N28 L0E . . . B 2 6.584 28.195 5.239 1 93.96 ? N28 L0E 1390 A 1 HETATM 26 C C29 L0E . . . B 2 6.536 28.874 3.986 1 93.82 ? C29 L0E 1390 A 1 HETATM 27 C C30 L0E . . . B 2 6.038 28.237 2.862 1 95.71 ? C30 L0E 1390 A 1 HETATM 28 C C31 L0E . . . B 2 5.992 28.896 1.657 1 95.16 ? C31 L0E 1390 A 1 HETATM 29 C C32 L0E . . . B 2 6.44 30.186 1.56 1 92.38 ? C32 L0E 1390 A 1 HETATM 30 C C33 L0E . . . B 2 6.937 30.826 2.662 1 93.62 ? C33 L0E 1390 A 1 HETATM 31 C C34 L0E . . . B 2 6.989 30.18 3.872 1 94.26 ? C34 L0E 1390 A 1 HETATM 32 H H7 L0E . . . B 2 4.283 31.187 10.366 1 74.56 ? H7 L0E 1390 A 1 HETATM 33 H H17 L0E . . . B 2 2.558 34.709 -0.633 1 105.93 ? H17 L0E 1390 A 1 HETATM 34 H H27 L0E . . . B 2 2.876 33.95 7.128 1 80.73 ? H27 L0E 1390 A 1 HETATM 35 H H35 L0E . . . B 2 5.388 30.232 5.724 1 86.11 ? H35 L0E 1390 A 1 HETATM 36 H H36 L0E . . . B 2 5.619 29.533 9.284 1 76.96 ? H36 L0E 1390 A 1 HETATM 37 H H37 L0E . . . B 2 2.928 31.997 2.49 1 90.57 ? H37 L0E 1390 A 1 HETATM 38 H H38 L0E . . . B 2 1.76 32.919 0.62 1 101.4 ? H38 L0E 1390 A 1 HETATM 39 H H39 L0E . . . B 2 0.883 34.24 0.788 1 101.4 ? H39 L0E 1390 A 1 HETATM 40 H H40 L0E . . . B 2 4.412 33.806 1.137 1 106.67 ? H40 L0E 1390 A 1 HETATM 41 H H41 L0E . . . B 2 3.993 33.018 -0.189 1 106.67 ? H41 L0E 1390 A 1 HETATM 42 H H42 L0E . . . B 2 5.991 34.267 -0.559 1 107 ? H42 L0E 1390 A 1 HETATM 43 H H43 L0E . . . B 2 4.824 34.775 -1.511 1 107 ? H43 L0E 1390 A 1 HETATM 44 H H44 L0E . . . B 2 4.123 37.635 0.308 1 108.22 ? H44 L0E 1390 A 1 HETATM 45 H H45 L0E . . . B 2 3.678 36.804 -0.988 1 108.22 ? H45 L0E 1390 A 1 HETATM 46 H H46 L0E . . . B 2 2.125 36.445 0.776 1 107.84 ? H46 L0E 1390 A 1 HETATM 47 H H47 L0E . . . B 2 3.293 35.886 1.678 1 107.84 ? H47 L0E 1390 A 1 HETATM 48 H H48 L0E . . . B 2 1.247 35.671 2.851 1 92.03 ? H48 L0E 1390 A 1 HETATM 49 H H49 L0E . . . B 2 1.698 35.632 5.135 1 88.07 ? H49 L0E 1390 A 1 HETATM 50 H H50 L0E . . . B 2 6.982 27.422 5.187 1 93.25 ? H50 L0E 1390 A 1 HETATM 51 H H51 L0E . . . B 2 5.727 27.344 2.928 1 95.01 ? H51 L0E 1390 A 1 HETATM 52 H H52 L0E . . . B 2 5.649 28.454 0.888 1 94.52 ? H52 L0E 1390 A 1 HETATM 53 H H53 L0E . . . B 2 6.408 30.638 0.722 1 93.49 ? H53 L0E 1390 A 1 HETATM 54 H H54 L0E . . . B 2 7.241 31.705 2.591 1 93.44 ? H54 L0E 1390 A 1 HETATM 55 H H55 L0E . . . B 2 7.333 30.63 4.639 1 93.94 ? H55 L0E 1390 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 55 #