data_2W1F # _model_server_result.job_id 1-6tk6LT32khmTf3iEa-hw _model_server_result.datetime_utc '2024-12-26 21:59:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w1f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1390}' # _entry.id 2W1F # _exptl.entry_id 2W1F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 303.318 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[3-(1H-BENZIMIDAZOL-2-YL)-1H-PYRAZOL-4-YL]BENZAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2W1F _cell.length_a 82.527 _cell.length_b 82.527 _cell.length_c 168.443 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W1F _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H13 N5 O' _chem_comp.formula_weight 303.318 _chem_comp.id L0F _chem_comp.mon_nstd_flag . _chem_comp.name N-[3-(1H-BENZIMIDAZOL-2-YL)-1H-PYRAZOL-4-YL]BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 O1 L0F doub 173 n n C20 C2 L0F sing 174 n n C2 N3 L0F sing 175 n n H26 N3 L0F sing 176 n n N3 C4 L0F sing 177 n n C9 C4 L0F sing 178 n y C4 C5 L0F doub 179 n y C5 H27 L0F sing 180 n n C5 N6 L0F sing 181 n y N8 N6 L0F sing 182 n y N6 H7 L0F sing 183 n n C9 N8 L0F doub 184 n y C10 C9 L0F sing 185 n y N11 C10 L0F doub 186 n y C10 N18 L0F sing 187 n y C12 N11 L0F sing 188 n y C13 C12 L0F doub 189 n y C12 C17 L0F sing 190 n y H28 C13 L0F sing 191 n n C14 C13 L0F sing 192 n y H29 C14 L0F sing 193 n n C14 C15 L0F doub 194 n y H30 C15 L0F sing 195 n n C15 C16 L0F sing 196 n y C16 C17 L0F doub 197 n y C16 H31 L0F sing 198 n n C17 N18 L0F sing 199 n y N18 H19 L0F sing 200 n n C21 C20 L0F doub 201 n y C25 C20 L0F sing 202 n y C22 C21 L0F sing 203 n y C21 H32 L0F sing 204 n n H33 C22 L0F sing 205 n n C23 C22 L0F doub 206 n y H34 C23 L0F sing 207 n n C23 C24 L0F sing 208 n y H35 C24 L0F sing 209 n n C24 C25 L0F doub 210 n y C25 H36 L0F sing 211 n n # _atom_sites.entry_id 2W1F _atom_sites.fract_transf_matrix[1][1] 0.012117 _atom_sites.fract_transf_matrix[1][2] 0.006996 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013992 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005937 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 L0F A 1 1390 1390 L0F L0F . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2017 2017 HOH HOH . C 3 HOH A 17 2018 2018 HOH HOH . C 3 HOH A 18 2019 2019 HOH HOH . C 3 HOH A 19 2020 2020 HOH HOH . C 3 HOH A 20 2021 2021 HOH HOH . C 3 HOH A 21 2022 2022 HOH HOH . C 3 HOH A 22 2023 2023 HOH HOH . C 3 HOH A 23 2024 2024 HOH HOH . C 3 HOH A 24 2025 2025 HOH HOH . C 3 HOH A 25 2026 2026 HOH HOH . C 3 HOH A 26 2028 2028 HOH HOH . C 3 HOH A 27 2029 2029 HOH HOH . C 3 HOH A 28 2030 2030 HOH HOH . C 3 HOH A 29 2031 2031 HOH HOH . C 3 HOH A 30 2032 2032 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 L0F . . . B 2 5.827 27.917 7.07 1 90.33 ? O1 L0F 1390 A 1 HETATM 2 C C2 L0F . . . B 2 5.92 28.744 6.186 1 88.63 ? C2 L0F 1390 A 1 HETATM 3 N N3 L0F . . . B 2 5.591 30.046 6.377 1 85.42 ? N3 L0F 1390 A 1 HETATM 4 C C4 L0F . . . B 2 5.001 30.579 7.488 1 79.51 ? C4 L0F 1390 A 1 HETATM 5 C C5 L0F . . . B 2 5.152 30.254 8.798 1 78.67 ? C5 L0F 1390 A 1 HETATM 6 N N6 L0F . . . B 2 4.35 31.072 9.496 1 74.03 ? N6 L0F 1390 A 1 HETATM 7 N N8 L0F . . . B 2 3.682 31.918 8.687 1 74.39 ? N8 L0F 1390 A 1 HETATM 8 C C9 L0F . . . B 2 4.08 31.612 7.469 1 75.01 ? C9 L0F 1390 A 1 HETATM 9 C C10 L0F . . . B 2 3.541 32.351 6.354 1 73.77 ? C10 L0F 1390 A 1 HETATM 10 N N11 L0F . . . B 2 3.574 31.976 5.086 1 75.69 ? N11 L0F 1390 A 1 HETATM 11 C C12 L0F . . . B 2 2.96 32.95 4.349 1 75.66 ? C12 L0F 1390 A 1 HETATM 12 C C13 L0F . . . B 2 2.722 33.066 2.989 1 73.52 ? C13 L0F 1390 A 1 HETATM 13 C C14 L0F . . . B 2 2.068 34.171 2.495 1 69.79 ? C14 L0F 1390 A 1 HETATM 14 C C15 L0F . . . B 2 1.645 35.166 3.35 1 71 ? C15 L0F 1390 A 1 HETATM 15 C C16 L0F . . . B 2 1.87 35.063 4.701 1 71.84 ? C16 L0F 1390 A 1 HETATM 16 C C17 L0F . . . B 2 2.53 33.958 5.214 1 74.1 ? C17 L0F 1390 A 1 HETATM 17 N N18 L0F . . . B 2 2.914 33.546 6.453 1 72.3 ? N18 L0F 1390 A 1 HETATM 18 C C20 L0F . . . B 2 6.408 28.356 4.823 1 91.54 ? C20 L0F 1390 A 1 HETATM 19 C C21 L0F . . . B 2 6.605 29.32 3.828 1 92.21 ? C21 L0F 1390 A 1 HETATM 20 C C22 L0F . . . B 2 7.052 28.946 2.584 1 92.2 ? C22 L0F 1390 A 1 HETATM 21 C C23 L0F . . . B 2 7.306 27.62 2.311 1 95.21 ? C23 L0F 1390 A 1 HETATM 22 C C24 L0F . . . B 2 7.116 26.66 3.284 1 94.03 ? C24 L0F 1390 A 1 HETATM 23 C C25 L0F . . . B 2 6.671 27.02 4.531 1 92.92 ? C25 L0F 1390 A 1 HETATM 24 H H7 L0F . . . B 2 4.247 31.09 10.331 1 75.42 ? H7 L0F 1390 A 1 HETATM 25 H H19 L0F . . . B 2 2.773 33.98 7.193 1 73.21 ? H19 L0F 1390 A 1 HETATM 26 H H26 L0F . . . B 2 5.841 30.608 5.782 1 84.65 ? H26 L0F 1390 A 1 HETATM 27 H H27 L0F . . . B 2 5.707 29.587 9.179 1 77.59 ? H27 L0F 1390 A 1 HETATM 28 H H28 L0F . . . B 2 3.015 32.378 2.397 1 73.06 ? H28 L0F 1390 A 1 HETATM 29 H H29 L0F . . . B 2 1.905 34.248 1.56 1 71.16 ? H29 L0F 1390 A 1 HETATM 30 H H30 L0F . . . B 2 1.19 35.928 3.002 1 70.88 ? H30 L0F 1390 A 1 HETATM 31 H H31 L0F . . . B 2 1.579 35.751 5.287 1 72.23 ? H31 L0F 1390 A 1 HETATM 32 H H32 L0F . . . B 2 6.429 30.23 4.013 1 92.01 ? H32 L0F 1390 A 1 HETATM 33 H H33 L0F . . . B 2 7.184 29.604 1.908 1 93.04 ? H33 L0F 1390 A 1 HETATM 34 H H34 L0F . . . B 2 7.616 27.365 1.447 1 94.03 ? H34 L0F 1390 A 1 HETATM 35 H H35 L0F . . . B 2 7.294 25.749 3.091 1 94.04 ? H35 L0F 1390 A 1 HETATM 36 H H36 L0F . . . B 2 6.542 26.364 5.194 1 92.83 ? H36 L0F 1390 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #