data_2W26 # _model_server_result.job_id clI2PUyCCI63e8Ebfut5VQ _model_server_result.datetime_utc '2024-11-02 22:33:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w26 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 2W26 # _exptl.entry_id 2W26 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 435.881 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-chloro-N-({(5S)-2-oxo-3-[4-(3-oxomorpholin-4-yl)phenyl]-1,3-oxazolidin-5-yl}methyl)thiophene-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2W26 _cell.length_a 56.042 _cell.length_b 72.028 _cell.length_c 78.446 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W26 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 46 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 B SG CYS 3 B CYS 1 1_555 B SG CYS 14 B CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf7 B SG CYS 10 B CYS 8 1_555 B SG CYS 23 B CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf8 B SG CYS 25 B CYS 23 1_555 B SG CYS 38 B CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc1 A OD1 ASP 56 A ASP 70 1_555 D CA CA . A CA 1244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc2 A O ASN 58 A ASN 72 1_555 D CA CA . A CA 1244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc3 A O GLN 61 A GLN 75 1_555 D CA CA . A CA 1244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc4 A OE2 GLU 66 A GLU 80 1_555 D CA CA . A CA 1244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc5 A O TYR 173 A TYR 185 1_555 E CA CA . A CA 1245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc6 A O ASP 174 A ASP 185 1_555 E CA CA . A CA 1245 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc7 A O ARG 211 A ARG 222 1_555 E CA CA . A CA 1245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc8 A O LYS 214 A LYS 224 1_555 E CA CA . A CA 1245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc9 D CA CA . A CA 1244 1_555 F O HOH . A HOH 2019 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc10 D CA CA . A CA 1244 1_555 F O HOH . A HOH 2020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc11 E CA CA . A CA 1245 1_555 F O HOH . A HOH 2066 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.039 ? # _chem_comp.formula 'C19 H18 Cl N3 O5 S' _chem_comp.formula_weight 435.881 _chem_comp.id RIV _chem_comp.mon_nstd_flag . _chem_comp.name 5-chloro-N-({(5S)-2-oxo-3-[4-(3-oxomorpholin-4-yl)phenyl]-1,3-oxazolidin-5-yl}methyl)thiophene-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Rivaroxaban # _atom_sites.entry_id 2W26 _atom_sites.fract_transf_matrix[1][1] 0.017844 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013883 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 RIV A 1 1001 1001 RIV RIV . D 4 CA A 1 1244 1244 CA CA . E 4 CA A 1 1245 1245 CA CA . F 5 HOH A 1 2001 2001 HOH HOH . F 5 HOH A 2 2002 2002 HOH HOH . F 5 HOH A 3 2003 2003 HOH HOH . F 5 HOH A 4 2004 2004 HOH HOH . F 5 HOH A 5 2005 2005 HOH HOH . F 5 HOH A 6 2006 2006 HOH HOH . F 5 HOH A 7 2007 2007 HOH HOH . F 5 HOH A 8 2008 2008 HOH HOH . F 5 HOH A 9 2009 2009 HOH HOH . F 5 HOH A 10 2010 2010 HOH HOH . F 5 HOH A 11 2011 2011 HOH HOH . F 5 HOH A 12 2012 2012 HOH HOH . F 5 HOH A 13 2013 2013 HOH HOH . F 5 HOH A 14 2014 2014 HOH HOH . F 5 HOH A 15 2015 2015 HOH HOH . F 5 HOH A 16 2016 2016 HOH HOH . F 5 HOH A 17 2017 2017 HOH HOH . F 5 HOH A 18 2018 2018 HOH HOH . F 5 HOH A 19 2019 2019 HOH HOH . F 5 HOH A 20 2020 2020 HOH HOH . F 5 HOH A 21 2021 2021 HOH HOH . F 5 HOH A 22 2022 2022 HOH HOH . F 5 HOH A 23 2023 2023 HOH HOH . F 5 HOH A 24 2024 2024 HOH HOH . F 5 HOH A 25 2025 2025 HOH HOH . F 5 HOH A 26 2026 2026 HOH HOH . F 5 HOH A 27 2027 2027 HOH HOH . F 5 HOH A 28 2028 2028 HOH HOH . F 5 HOH A 29 2029 2029 HOH HOH . F 5 HOH A 30 2030 2030 HOH HOH . F 5 HOH A 31 2031 2031 HOH HOH . F 5 HOH A 32 2032 2032 HOH HOH . F 5 HOH A 33 2033 2033 HOH HOH . F 5 HOH A 34 2034 2034 HOH HOH . F 5 HOH A 35 2035 2035 HOH HOH . F 5 HOH A 36 2036 2036 HOH HOH . F 5 HOH A 37 2037 2037 HOH HOH . F 5 HOH A 38 2038 2038 HOH HOH . F 5 HOH A 39 2039 2039 HOH HOH . F 5 HOH A 40 2040 2040 HOH HOH . F 5 HOH A 41 2041 2041 HOH HOH . F 5 HOH A 42 2042 2042 HOH HOH . F 5 HOH A 43 2043 2043 HOH HOH . F 5 HOH A 44 2044 2044 HOH HOH . F 5 HOH A 45 2045 2045 HOH HOH . F 5 HOH A 46 2046 2046 HOH HOH . F 5 HOH A 47 2047 2047 HOH HOH . F 5 HOH A 48 2048 2048 HOH HOH . F 5 HOH A 49 2049 2049 HOH HOH . F 5 HOH A 50 2050 2050 HOH HOH . F 5 HOH A 51 2051 2051 HOH HOH . F 5 HOH A 52 2052 2052 HOH HOH . F 5 HOH A 53 2053 2053 HOH HOH . F 5 HOH A 54 2054 2054 HOH HOH . F 5 HOH A 55 2055 2055 HOH HOH . F 5 HOH A 56 2056 2056 HOH HOH . F 5 HOH A 57 2057 2057 HOH HOH . F 5 HOH A 58 2058 2058 HOH HOH . F 5 HOH A 59 2059 2059 HOH HOH . F 5 HOH A 60 2060 2060 HOH HOH . F 5 HOH A 61 2061 2061 HOH HOH . F 5 HOH A 62 2062 2062 HOH HOH . F 5 HOH A 63 2063 2063 HOH HOH . F 5 HOH A 64 2064 2064 HOH HOH . F 5 HOH A 65 2065 2065 HOH HOH . F 5 HOH A 66 2066 2066 HOH HOH . F 5 HOH A 67 2067 2067 HOH HOH . F 5 HOH A 68 2068 2068 HOH HOH . F 5 HOH A 69 2069 2069 HOH HOH . F 5 HOH A 70 2070 2070 HOH HOH . F 5 HOH A 71 2071 2071 HOH HOH . F 5 HOH A 72 2072 2072 HOH HOH . F 5 HOH A 73 2073 2073 HOH HOH . F 5 HOH A 74 2074 2074 HOH HOH . F 5 HOH A 75 2075 2075 HOH HOH . F 5 HOH A 76 2076 2076 HOH HOH . F 5 HOH A 77 2077 2077 HOH HOH . F 5 HOH A 78 2078 2078 HOH HOH . F 5 HOH A 79 2079 2079 HOH HOH . F 5 HOH A 80 2080 2080 HOH HOH . F 5 HOH A 81 2081 2081 HOH HOH . F 5 HOH A 82 2082 2082 HOH HOH . G 5 HOH B 1 2001 2001 HOH HOH . G 5 HOH B 2 2002 2002 HOH HOH . G 5 HOH B 3 2003 2003 HOH HOH . G 5 HOH B 4 2004 2004 HOH HOH . G 5 HOH B 5 2005 2005 HOH HOH . G 5 HOH B 6 2006 2006 HOH HOH . G 5 HOH B 7 2007 2007 HOH HOH . G 5 HOH B 8 2008 2008 HOH HOH . G 5 HOH B 9 2009 2009 HOH HOH . G 5 HOH B 10 2010 2010 HOH HOH . G 5 HOH B 11 2011 2011 HOH HOH . G 5 HOH B 12 2012 2012 HOH HOH . G 5 HOH B 13 2013 2013 HOH HOH . G 5 HOH B 14 2014 2014 HOH HOH . G 5 HOH B 15 2015 2015 HOH HOH . G 5 HOH B 16 2016 2016 HOH HOH . G 5 HOH B 17 2017 2017 HOH HOH . G 5 HOH B 18 2018 2018 HOH HOH . G 5 HOH B 19 2019 2019 HOH HOH . G 5 HOH B 20 2020 2020 HOH HOH . G 5 HOH B 21 2021 2021 HOH HOH . G 5 HOH B 22 2022 2022 HOH HOH . G 5 HOH B 23 2023 2023 HOH HOH . G 5 HOH B 24 2024 2024 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RIV . . . C 3 9.643 1.777 18.433 1 42.88 ? C1 RIV 1001 A 1 HETATM 2 N N2 RIV . . . C 3 8.303 2.377 18.109 1 44.23 ? N2 RIV 1001 A 1 HETATM 3 C C3 RIV . . . C 3 10.053 0.667 17.441 1 43.78 ? C3 RIV 1001 A 1 HETATM 4 C C4 RIV . . . C 3 7.671 2.122 16.881 1 45.67 ? C4 RIV 1001 A 1 HETATM 5 O O5 RIV . . . C 3 9.768 1.124 16.111 1 44.32 ? O5 RIV 1001 A 1 HETATM 6 C C6 RIV . . . C 3 8.355 1.223 15.853 1 45.33 ? C6 RIV 1001 A 1 HETATM 7 C C7 RIV . . . C 3 6.487 4.959 20.981 1 42.71 ? C7 RIV 1001 A 1 HETATM 8 C C8 RIV . . . C 3 7.333 5.468 19.984 1 41.73 ? C8 RIV 1001 A 1 HETATM 9 C C9 RIV . . . C 3 6.237 3.551 21.013 1 43.28 ? C9 RIV 1001 A 1 HETATM 10 C C10 RIV . . . C 3 7.918 4.619 19.048 1 44.15 ? C10 RIV 1001 A 1 HETATM 11 C C11 RIV . . . C 3 6.837 2.69 20.07 1 43.95 ? C11 RIV 1001 A 1 HETATM 12 C C12 RIV . . . C 3 7.682 3.222 19.078 1 43.84 ? C12 RIV 1001 A 1 HETATM 13 O O13 RIV . . . C 3 6.583 2.613 16.63 1 47.12 ? O13 RIV 1001 A 1 HETATM 14 N N14 RIV . . . C 3 5.906 5.863 21.947 1 41.97 ? N14 RIV 1001 A 1 HETATM 15 C C15 RIV . . . C 3 5.04 5.543 22.995 1 42.2 ? C15 RIV 1001 A 1 HETATM 16 C C16 RIV . . . C 3 6.146 7.326 22 1 41.74 ? C16 RIV 1001 A 1 HETATM 17 O O17 RIV . . . C 3 4.69 6.614 23.757 1 42.33 ? O17 RIV 1001 A 1 HETATM 18 C C18 RIV . . . C 3 5.213 7.787 23.134 1 42.62 ? C18 RIV 1001 A 1 HETATM 19 O O19 RIV . . . C 3 4.634 4.419 23.228 1 40.7 ? O19 RIV 1001 A 1 HETATM 20 C C20 RIV . . . C 3 5.924 8.721 24.155 1 40.52 ? C20 RIV 1001 A 1 HETATM 21 N N21 RIV . . . C 3 7.078 8.136 24.932 1 38.19 ? N21 RIV 1001 A 1 HETATM 22 C C22 RIV . . . C 3 8.402 8.558 24.672 1 37.79 ? C22 RIV 1001 A 1 HETATM 23 S S23 RIV . . . C 3 11.131 8.264 25.063 1 33.91 ? S23 RIV 1001 A 1 HETATM 24 C C24 RIV . . . C 3 11.805 7.503 26.288 1 37.08 ? C24 RIV 1001 A 1 HETATM 25 C C25 RIV . . . C 3 9.567 8.044 25.466 1 39.01 ? C25 RIV 1001 A 1 HETATM 26 C C26 RIV . . . C 3 10.794 7.011 27.13 1 35.32 ? C26 RIV 1001 A 1 HETATM 27 C C27 RIV . . . C 3 9.509 7.324 26.659 1 37.13 ? C27 RIV 1001 A 1 HETATM 28 O O28 RIV . . . C 3 8.611 9.379 23.797 1 36.4 ? O28 RIV 1001 A 1 HETATM 29 CL CL RIV . . . C 3 13.544 7.302 26.531 1 31.73 ? CL RIV 1001 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #