data_2W3W # _model_server_result.job_id Hu9mz1Lxi2dstSqUl758Qg _model_server_result.datetime_utc '2024-11-29 02:17:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w3w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1168}' # _entry.id 2W3W # _exptl.entry_id 2W3W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 368.433 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-{[(2,5-DIETHOXYPHENYL)AMINO]METHYL}-5-METHYLPYRIDO[2,3-D]PYRIMIDINE-2,4-DIAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2W3W _cell.length_a 36.729 _cell.length_b 53.965 _cell.length_c 81.191 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W3W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H24 N6 O2' _chem_comp.formula_weight 368.433 _chem_comp.id VG9 _chem_comp.mon_nstd_flag . _chem_comp.name 6-{[(2,5-DIETHOXYPHENYL)AMINO]METHYL}-5-METHYLPYRIDO[2,3-D]PYRIMIDINE-2,4-DIAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C2 VG9 sing 458 n n C2 N3 VG9 sing 459 n y C2 N1 VG9 doub 460 n y N3 C4 VG9 doub 461 n y C4 N4 VG9 sing 462 n n C4 C4A VG9 sing 463 n y N1 C8A VG9 sing 464 n y C8A N8 VG9 sing 465 n y C8A C4A VG9 doub 466 n y N8 C7 VG9 doub 467 n y C7 C6 VG9 sing 468 n y C6 C5 VG9 doub 469 n y C6 C9 VG9 sing 470 n n C5 C5A VG9 sing 471 n n C5 C4A VG9 sing 472 n y C9 N10 VG9 sing 473 n n N10 C11 VG9 sing 474 n n C11 C12 VG9 sing 475 n y C11 C16 VG9 doub 476 n y C12 O2 VG9 sing 477 n n C12 C13 VG9 doub 478 n y O2 C21 VG9 sing 479 n n C21 C22 VG9 sing 480 n n C13 C14 VG9 sing 481 n y C14 C15 VG9 doub 482 n y C15 C16 VG9 sing 483 n y C15 O5 VG9 sing 484 n n O5 C51 VG9 sing 485 n n C51 C52 VG9 sing 486 n n N2 H21N VG9 sing 487 n n N2 H22N VG9 sing 488 n n N4 H41N VG9 sing 489 n n N4 H42N VG9 sing 490 n n C7 H7 VG9 sing 491 n n C9 H91C VG9 sing 492 n n C9 H92C VG9 sing 493 n n C5A H5A1 VG9 sing 494 n n C5A H5A2 VG9 sing 495 n n C5A H5A3 VG9 sing 496 n n N10 H10 VG9 sing 497 n n C16 H16 VG9 sing 498 n n C13 H13 VG9 sing 499 n n C21 H211 VG9 sing 500 n n C21 H212 VG9 sing 501 n n C22 H221 VG9 sing 502 n n C22 H222 VG9 sing 503 n n C22 H223 VG9 sing 504 n n C14 H14 VG9 sing 505 n n C51 H511 VG9 sing 506 n n C51 H512 VG9 sing 507 n n C52 H521 VG9 sing 508 n n C52 H522 VG9 sing 509 n n C52 H523 VG9 sing 510 n n # _atom_sites.entry_id 2W3W _atom_sites.fract_transf_matrix[1][1] 0.027226 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018531 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012317 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VG9 A 1 1168 1168 VG9 VG9 . C 3 NDP A 1 1169 1169 NDP NDP . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . D 4 HOH A 80 2080 2080 HOH HOH . D 4 HOH A 81 2081 2081 HOH HOH . D 4 HOH A 82 2082 2082 HOH HOH . D 4 HOH A 83 2083 2083 HOH HOH . D 4 HOH A 84 2084 2084 HOH HOH . D 4 HOH A 85 2085 2085 HOH HOH . D 4 HOH A 86 2086 2086 HOH HOH . D 4 HOH A 87 2087 2087 HOH HOH . D 4 HOH A 88 2088 2088 HOH HOH . D 4 HOH A 89 2089 2089 HOH HOH . D 4 HOH A 90 2090 2090 HOH HOH . D 4 HOH A 91 2091 2091 HOH HOH . D 4 HOH A 92 2092 2092 HOH HOH . D 4 HOH A 93 2093 2093 HOH HOH . D 4 HOH A 94 2094 2094 HOH HOH . D 4 HOH A 95 2095 2095 HOH HOH . D 4 HOH A 96 2096 2096 HOH HOH . D 4 HOH A 97 2097 2097 HOH HOH . D 4 HOH A 98 2098 2098 HOH HOH . D 4 HOH A 99 2099 2099 HOH HOH . D 4 HOH A 100 2100 2100 HOH HOH . D 4 HOH A 101 2101 2101 HOH HOH . D 4 HOH A 102 2102 2102 HOH HOH . D 4 HOH A 103 2103 2103 HOH HOH . D 4 HOH A 104 2104 2104 HOH HOH . D 4 HOH A 105 2105 2105 HOH HOH . D 4 HOH A 106 2106 2106 HOH HOH . D 4 HOH A 107 2107 2107 HOH HOH . D 4 HOH A 108 2108 2108 HOH HOH . D 4 HOH A 109 2109 2109 HOH HOH . D 4 HOH A 110 2110 2110 HOH HOH . D 4 HOH A 111 2111 2111 HOH HOH . D 4 HOH A 112 2112 2112 HOH HOH . D 4 HOH A 113 2113 2113 HOH HOH . D 4 HOH A 114 2114 2114 HOH HOH . D 4 HOH A 115 2115 2115 HOH HOH . D 4 HOH A 116 2116 2116 HOH HOH . D 4 HOH A 117 2117 2117 HOH HOH . D 4 HOH A 118 2118 2118 HOH HOH . D 4 HOH A 119 2119 2119 HOH HOH . D 4 HOH A 120 2120 2120 HOH HOH . D 4 HOH A 121 2121 2121 HOH HOH . D 4 HOH A 122 2122 2122 HOH HOH . D 4 HOH A 123 2123 2123 HOH HOH . D 4 HOH A 124 2124 2124 HOH HOH . D 4 HOH A 125 2125 2125 HOH HOH . D 4 HOH A 126 2126 2126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 VG9 . . . B 2 12.324 2.515 40.977 1 13.66 ? N2 VG9 1168 A 1 HETATM 2 C C2 VG9 . . . B 2 12.89 3.499 41.709 1 14.51 ? C2 VG9 1168 A 1 HETATM 3 N N3 VG9 . . . B 2 12.85 3.468 43.066 1 12.63 ? N3 VG9 1168 A 1 HETATM 4 C C4 VG9 . . . B 2 13.403 4.436 43.807 1 12.66 ? C4 VG9 1168 A 1 HETATM 5 N N4 VG9 . . . B 2 13.368 4.2 45.127 1 11.14 ? N4 VG9 1168 A 1 HETATM 6 N N1 VG9 . . . B 2 13.49 4.516 41.055 1 13.86 ? N1 VG9 1168 A 1 HETATM 7 C C8A VG9 . . . B 2 13.987 5.547 41.764 1 14.5 ? C8A VG9 1168 A 1 HETATM 8 N N8 VG9 . . . B 2 14.524 6.562 41.061 1 16.75 ? N8 VG9 1168 A 1 HETATM 9 C C7 VG9 . . . B 2 15.052 7.629 41.684 1 15.87 ? C7 VG9 1168 A 1 HETATM 10 C C6 VG9 . . . B 2 15.076 7.753 43.056 1 15.12 ? C6 VG9 1168 A 1 HETATM 11 C C5 VG9 . . . B 2 14.53 6.696 43.818 1 14.27 ? C5 VG9 1168 A 1 HETATM 12 C C5A VG9 . . . B 2 14.526 6.842 45.312 1 14.56 ? C5A VG9 1168 A 1 HETATM 13 C C4A VG9 . . . B 2 13.975 5.568 43.163 1 13.23 ? C4A VG9 1168 A 1 HETATM 14 C C9 VG9 . . . B 2 15.711 8.993 43.712 1 16.42 ? C9 VG9 1168 A 1 HETATM 15 N N10 VG9 . . . B 2 15.843 10.091 42.735 1 25.07 ? N10 VG9 1168 A 1 HETATM 16 C C11 VG9 . . . B 2 14.815 10.819 42.217 1 28.02 ? C11 VG9 1168 A 1 HETATM 17 C C12 VG9 . . . B 2 15.094 11.662 41.14 1 30.98 ? C12 VG9 1168 A 1 HETATM 18 O O2 VG9 . . . B 2 16.369 11.732 40.617 1 33.72 ? O2 VG9 1168 A 1 HETATM 19 C C21 VG9 . . . B 2 16.616 12.459 39.428 0 37.59 ? C21 VG9 1168 A 1 HETATM 20 C C22 VG9 . . . B 2 18.075 12.24 39.066 0 39.3 ? C22 VG9 1168 A 1 HETATM 21 C C13 VG9 . . . B 2 14.088 12.412 40.558 1 30.26 ? C13 VG9 1168 A 1 HETATM 22 C C14 VG9 . . . B 2 12.797 12.385 41.058 1 30.37 ? C14 VG9 1168 A 1 HETATM 23 C C15 VG9 . . . B 2 12.491 11.557 42.121 1 31.24 ? C15 VG9 1168 A 1 HETATM 24 C C16 VG9 . . . B 2 13.502 10.781 42.701 1 29.29 ? C16 VG9 1168 A 1 HETATM 25 O O5 VG9 . . . B 2 11.212 11.499 42.617 1 32.32 ? O5 VG9 1168 A 1 HETATM 26 C C51 VG9 . . . B 2 10.143 12.361 42.193 1 34.33 ? C51 VG9 1168 A 1 HETATM 27 C C52 VG9 . . . B 2 8.907 12.131 43.036 1 33.74 ? C52 VG9 1168 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #