data_2W48 # _model_server_result.job_id vXJJqa_-Psf1oEKjnFdJ7w _model_server_result.datetime_utc '2025-03-06 10:11:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w48 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1316}' # _entry.id 2W48 # _exptl.entry_id 2W48 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2W48 _cell.length_a 91.67 _cell.length_b 113.33 _cell.length_c 184.15 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W48 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRD sing 271 n n C1 H1C1 MRD sing 272 n n C1 H1C2 MRD sing 273 n n C1 H1C3 MRD sing 274 n n C2 O2 MRD sing 275 n n C2 CM MRD sing 276 n n C2 C3 MRD sing 277 n n O2 H2 MRD sing 278 n n CM HMC1 MRD sing 279 n n CM HMC2 MRD sing 280 n n CM HMC3 MRD sing 281 n n C3 C4 MRD sing 282 n n C3 H3C1 MRD sing 283 n n C3 H3C2 MRD sing 284 n n C4 O4 MRD sing 285 n n C4 C5 MRD sing 286 n n C4 H4 MRD sing 287 n n O4 HA MRD sing 288 n n C5 H5C1 MRD sing 289 n n C5 H5C2 MRD sing 290 n n C5 H5C3 MRD sing 291 n n # _atom_sites.entry_id 2W48 _atom_sites.fract_transf_matrix[1][1] 0.010909 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00543 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL A 1 1316 1316 GOL GOL . F 3 MPD A 1 1317 1317 MPD MPD . G 4 CL A 1 1318 1318 CL CL . H 5 MRD B 1 1316 1316 MRD MRD . I 2 GOL D 1 1316 1316 GOL GOL . J 6 HOH A 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . . . H 5 2.555 14.694 -5.231 1 90.56 ? C1 MRD 1316 B 1 HETATM 2 C C2 MRD . . . H 5 3.142 13.29 -5.191 1 90.56 ? C2 MRD 1316 B 1 HETATM 3 O O2 MRD . . . H 5 3.024 12.726 -6.529 1 90.56 ? O2 MRD 1316 B 1 HETATM 4 C CM MRD . . . H 5 4.623 13.339 -4.827 1 90.56 ? CM MRD 1316 B 1 HETATM 5 C C3 MRD . . . H 5 2.407 12.458 -4.133 1 90.56 ? C3 MRD 1316 B 1 HETATM 6 C C4 MRD . . . H 5 0.893 12.695 -4.11 1 90.56 ? C4 MRD 1316 B 1 HETATM 7 O O4 MRD . . . H 5 0.428 12.887 -2.788 1 90.56 ? O4 MRD 1316 B 1 HETATM 8 C C5 MRD . . . H 5 0.148 11.512 -4.721 1 90.56 ? C5 MRD 1316 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #