data_2W4Z # _model_server_result.job_id xVu6U8zXUKkc6421Ea48vA _model_server_result.datetime_utc '2024-12-18 10:42:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w4z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1124}' # _entry.id 2W4Z # _exptl.entry_id 2W4Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2W4Z _cell.length_a 273.6 _cell.length_b 273.6 _cell.length_c 640 _cell.Z_PDB 1620 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W4Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 180-MERIC 180 'complete icosahedral assembly' 1 ? trimeric 3 'icosahedral asymmetric unit' 2 ? pentadecameric 15 'icosahedral pentamer' 3 ? octadecameric 18 'icosahedral 23 hexamer' 4 ? trimeric 3 'icosahedral asymmetric unit, std point frame' 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 (1-60) A,B,C,D,E,F,G,H,I,J 2 1 A,B,C,D,E,F,G,H,I,J 3 (1-5) A,B,C,D,E,F,G,H,I,J 4 (1,2,6,10,23,24) A,B,C,D,E,F,G,H,I,J 5 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.324741 0.147764 0.934189 0.850238 -0.387045 0.356779 0.414292 0.910144 0.000055 -0.00553 -0.00166 -0.00121 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.750599 0.136829 0.646435 0.493697 0.534095 -0.686299 -0.439163 0.834278 0.33334 -0.00387 0.00449 0.00283 3 'point symmetry operation' ? ? 0.347061 0.71509 0.606791 0.935646 -0.219755 -0.276176 -0.064146 0.663592 -0.74534 -0.00433 0.00304 0.00921 4 'point symmetry operation' ? ? 0.347061 0.935646 -0.064146 0.71509 -0.219755 0.663592 0.606791 -0.276176 -0.74534 -0.00075 -0.00235 0.01033 5 'point symmetry operation' ? ? 0.750599 0.493697 -0.439163 0.136829 0.534095 0.834278 0.646435 -0.686299 0.33334 0.00193 -0.00423 0.00464 6 'point symmetry operation' ? ? -0.656724 0.754131 0.000046 0.754131 0.656724 0.000101 0.000046 0.000101 -1 -0.00077 0.00035 0.01152 7 'point symmetry operation' ? ? -0.120644 0.312958 -0.942074 0.890228 0.454024 0.036822 0.439247 -0.834218 -0.333379 0.00516 0.00038 0.00869 8 'point symmetry operation' ? ? 0.477674 -0.63531 -0.606802 0.876184 0.39502 0.276153 0.064256 -0.663581 0.74534 0.00437 -0.00092 0.00231 9 'point symmetry operation' ? ? 0.311376 -0.780198 0.542527 0.731407 0.561254 0.387347 -0.606703 0.276197 0.745403 -0.00205 -0.00176 0.00118 10 'point symmetry operation' ? ? -0.38972 0.078524 0.91758 0.655974 0.722996 0.216737 -0.646387 0.686375 -0.333276 -0.00522 -0.00097 0.00688 11 'point symmetry operation' ? ? 0.44581 -0.658161 0.606694 -0.658161 -0.700392 -0.276179 0.606694 -0.276179 -0.745418 -0.00259 0.00384 0.01033 12 'point symmetry operation' ? ? -0.256745 0.21563 0.942118 -0.718509 -0.694541 -0.036842 0.646395 -0.686379 0.333252 -0.00555 0.00246 0.00464 13 'point symmetry operation' ? ? -0.5 0.866025 0.000089 -0.866025 -0.5 -0.000088 -0.000031 -0.000121 1 -0.00093 0.00202 0 14 'point symmetry operation' ? ? 0.052215 0.3942 -0.91754 -0.896848 -0.385618 -0.216709 -0.439246 0.834209 0.333403 0.00489 0.00312 0.00283 15 'point symmetry operation' ? ? 0.636758 -0.547799 -0.542638 -0.768381 -0.509467 -0.387343 -0.06427 0.663596 -0.745325 0.00387 0.00425 0.00921 16 'point symmetry operation' ? ? -0.789086 -0.09597 -0.606739 -0.09597 -0.956332 0.276078 -0.606739 0.276078 0.745418 0.00383 0.00092 0.00118 17 'point symmetry operation' ? ? -0.37321 -0.665416 -0.646479 -0.665416 -0.293577 0.686319 -0.646479 0.686319 -0.333213 0.00473 -0.00222 0.00688 18 'point symmetry operation' ? ? -0.324735 -0.945805 -0.000079 -0.945805 0.324735 0.000111 -0.000079 0.000111 -1 0.00136 0.00097 0.01152 19 'point symmetry operation' ? ? -0.710652 -0.549649 0.439158 -0.549649 0.044119 -0.83423 0.439158 -0.83423 -0.333467 -0.00163 0.00609 0.00869 20 'point symmetry operation' ? ? -0.997637 -0.024422 0.064222 -0.024422 -0.747624 -0.663673 0.064222 -0.663673 0.745261 -0.00011 0.00605 0.00231 21 'point symmetry operation' ? ? -0.058398 -0.330277 0.942076 0.960746 -0.274972 -0.036845 0.271214 0.902944 0.33337 -0.00488 0.00173 0.00265 22 'point symmetry operation' ? ? -0.620615 0.601564 0.502949 0.601564 -0.046143 0.797491 0.502949 0.797491 -0.333242 -0.00347 -0.00333 0.0066 23 'point symmetry operation' ? ? -0.38972 0.655974 -0.646387 0.078524 0.722996 0.686375 0.91758 0.216737 -0.333276 0.00305 -0.00361 0.00729 24 'point symmetry operation' ? ? 0.315198 -0.242239 -0.91759 0.11445 0.969521 -0.216634 0.9421 -0.036735 0.333315 0.00567 0.00127 0.00378 25 'point symmetry operation' ? ? 0.519966 -0.851776 0.064135 0.659693 0.352743 -0.663609 0.542623 0.387364 0.745325 0.00077 0.00457 0.00091 26 'point symmetry operation' ? ? -0.210678 -0.260846 -0.942112 -0.838311 0.543944 0.036862 0.502841 0.797549 -0.333267 0.0059 0.00047 0.0066 27 'point symmetry operation' ? ? 0.126828 -0.954127 -0.271215 -0.376881 0.206566 -0.902935 0.917538 0.216733 -0.333394 0.00288 0.00626 0.00729 28 'point symmetry operation' ? ? -0.256745 -0.718509 0.646395 0.21563 -0.694541 -0.686379 0.942118 -0.036842 0.333252 -0.00266 0.00609 0.00378 29 'point symmetry operation' ? ? -0.831311 0.120392 0.542612 0.120392 -0.914078 0.387256 0.542612 0.387256 0.745389 -0.00306 0.0002 0.00091 30 'point symmetry operation' ? ? -0.80284 0.403243 -0.439139 -0.53098 -0.148652 0.834244 0.271124 0.902938 0.333458 0.00222 -0.00328 0.00265 31 'point symmetry operation' ? ? 0.762892 0.009577 -0.646455 0.586932 -0.429562 0.686285 -0.27112 -0.902987 -0.333331 0.00374 -0.0022 0.00886 32 'point symmetry operation' ? ? 0.861254 -0.429823 0.271099 -0.072913 0.423435 0.902987 -0.502917 -0.797468 0.333345 -0.001 -0.00446 0.00492 33 'point symmetry operation' ? ? 0.315198 0.11445 0.9421 -0.242239 0.969521 -0.036735 -0.917589 -0.216634 0.333315 -0.00549 0.00028 0.00422 34 'point symmetry operation' ? ? -0.120644 0.890228 0.439247 0.312957 0.454024 -0.834218 -0.942074 0.036822 -0.333379 -0.00353 0.00546 0.00774 35 'point symmetry operation' ? ? 0.156046 0.825414 -0.542533 0.825414 -0.410657 -0.387367 -0.542533 -0.387367 -0.745389 0.00217 0.00393 0.01061 36 'point symmetry operation' ? ? -0.493817 0.581545 0.64649 -0.709367 0.16059 -0.686301 -0.502935 -0.797506 0.333227 -0.00429 0.00511 0.00492 37 'point symmetry operation' ? ? -0.367466 0.782385 -0.502834 -0.151769 -0.583858 -0.797544 -0.91757 -0.216756 0.33329 0.00206 0.00663 0.00422 38 'point symmetry operation' ? ? 0.331267 -0.051915 -0.942108 -0.051915 -0.997975 0.036739 -0.942108 0.036739 -0.333292 0.00557 0.00234 0.00774 39 'point symmetry operation' ? ? 0.636758 -0.768381 -0.06427 -0.547799 -0.509467 0.663596 -0.542638 -0.387343 -0.745325 0.00139 -0.00183 0.01061 40 'point symmetry operation' ? ? 0.126828 -0.376881 0.917538 -0.954127 0.206566 0.216733 -0.271215 -0.902935 -0.333394 -0.0047 -0.00012 0.00886 41 'point symmetry operation' ? ? -0.058398 0.960746 0.271214 -0.330277 -0.274972 0.902944 0.942076 -0.036845 0.33337 -0.00266 -0.00353 0.00378 42 'point symmetry operation' ? ? 0.311376 0.731407 -0.606703 -0.780198 0.561254 0.276197 0.542527 0.387347 0.745403 0.00264 -0.00094 0.00091 43 'point symmetry operation' ? ? 0.861254 -0.072913 -0.502917 -0.429823 0.423435 -0.797468 0.271099 0.902987 0.333345 0.00301 0.00538 0.00266 44 'point symmetry operation' ? ? 0.831322 -0.340672 0.439143 0.236643 -0.497968 -0.834283 0.502896 0.797478 -0.333354 -0.00207 0.00669 0.0066 45 'point symmetry operation' ? ? 0.262946 0.298165 0.917582 0.298165 -0.929607 0.216629 0.917582 0.216629 -0.333339 -0.00558 0.00118 0.00729 46 'point symmetry operation' ? ? 0.762892 0.586932 -0.27112 0.009577 -0.429562 -0.902987 -0.646455 0.686285 -0.333331 0.00084 0.00702 0.00688 47 'point symmetry operation' ? ? 0.981459 0.191674 -0.000025 0.191674 -0.981459 -0.000002 -0.000025 -0.000002 -1 -0.00024 0.00251 0.01152 48 'point symmetry operation' ? ? 0.831322 0.236643 0.502896 -0.340672 -0.497968 0.797478 0.439143 -0.834283 -0.333354 -0.00318 -0.00264 0.00869 49 'point symmetry operation' ? ? 0.519966 0.659693 0.542623 -0.851776 0.352743 0.387364 0.064135 -0.663609 0.745325 -0.00391 -0.00131 0.00231 50 'point symmetry operation' ? ? 0.477674 0.876184 0.064256 -0.63531 0.39502 -0.663581 -0.606802 0.276153 0.74534 -0.00143 0.00467 0.00119 51 'point symmetry operation' ? ? -0.493817 -0.709367 -0.502935 0.581545 0.16059 -0.797506 0.64649 -0.686301 0.333227 0.00398 0.0056 0.00464 52 'point symmetry operation' ? ? -0.5 -0.866025 -0.000031 0.866025 -0.5 -0.000121 0.00009 -0.000088 1 0.00128 0.00181 0 53 'point symmetry operation' ? ? -0.80284 -0.53098 0.271124 0.403243 -0.148652 0.902938 -0.439139 0.834244 0.333458 -0.00067 -0.00378 0.00283 54 'point symmetry operation' ? ? -0.983822 -0.167252 -0.064197 -0.167252 0.729083 0.663675 -0.064197 0.663675 -0.745261 0.00081 -0.00346 0.00921 55 'point symmetry operation' ? ? -0.792835 -0.277501 -0.542591 -0.057055 0.920205 -0.387257 0.60676 -0.276073 -0.745403 0.00369 0.00234 0.01033 56 'point symmetry operation' ? ? -0.210678 -0.838311 0.502841 -0.260846 0.543944 0.797549 -0.942112 0.036862 -0.333267 -0.00168 -0.00398 0.00774 57 'point symmetry operation' ? ? -0.792835 -0.057055 0.60676 -0.277501 0.920205 -0.276073 -0.542591 -0.387257 -0.745403 -0.00321 0.00172 0.01061 58 'point symmetry operation' ? ? -0.889736 0.367251 -0.271103 0.367251 0.223185 -0.902948 -0.271103 -0.902948 -0.333449 0.00131 0.00615 0.00886 59 'point symmetry operation' ? ? -0.367466 -0.151769 -0.91757 0.782385 -0.583858 -0.216756 -0.502834 -0.797544 0.33329 0.00564 0.00318 0.00492 60 'point symmetry operation' ? ? 0.052215 -0.896848 -0.439246 0.3942 -0.385618 0.834209 -0.91754 -0.216709 0.333403 0.00378 -0.00308 0.00422 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLN 25 A GLN 25 1_555 H CA CA . C CA 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc2 A OD2 ASP 26 A ASP 26 1_555 H CA CA . C CA 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc3 A OD1 ASP 100 A ASP 100 1_555 D CA CA . A CA 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc4 A OE1 GLU 103 A GLU 103 1_555 D CA CA . A CA 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc5 A OE2 GLU 103 A GLU 103 1_555 D CA CA . A CA 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc6 B O GLN 25 B GLN 25 1_555 H CA CA . C CA 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc7 B OD2 ASP 26 B ASP 26 1_555 H CA CA . C CA 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc8 B OD1 ASP 100 B ASP 100 1_555 F CA CA . B CA 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc9 B OE1 GLU 103 B GLU 103 1_555 F CA CA . B CA 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? metalc ? metalc10 B OE2 GLU 103 B GLU 103 1_555 F CA CA . B CA 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc11 C O GLN 25 C GLN 25 1_555 H CA CA . C CA 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc12 C OD1 ASP 26 C ASP 26 1_555 H CA CA . C CA 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc13 C OD1 ASP 100 C ASP 100 1_555 I CA CA . C CA 1124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc14 C OE1 GLU 103 C GLU 103 1_555 I CA CA . C CA 1124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc15 C OE2 GLU 103 C GLU 103 1_555 I CA CA . C CA 1124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2W4Z _atom_sites.fract_transf_matrix[1][1] 0.003655 _atom_sites.fract_transf_matrix[1][2] 0.00211 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CA A 1 1123 1123 CA CA . E 3 AMP A 1 1124 1124 AMP AMP . F 2 CA B 1 1123 1123 CA CA . G 3 AMP B 1 1124 1124 AMP AMP . H 2 CA C 1 1123 1123 CA CA . I 2 CA C 1 1124 1124 CA CA . J 3 AMP C 1 1125 1125 AMP AMP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 2 _atom_site.Cartn_x 62.063 _atom_site.Cartn_y 119.117 _atom_site.Cartn_z -10.371 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 78.81 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1124 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 42 _model_server_stats.element_count 1 #