data_2W55
#
_model_server_result.job_id            cNs13tLjTBbRp8kqqyGPFQ 
_model_server_result.datetime_utc      '2024-11-27 17:57:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2w55 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1463}' 
#
_entry.id    2W55 
#
_exptl.entry_id    2W55 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              175.82 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FE2/S2 (INORGANIC) CLUSTER' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         109.45 
_cell.angle_beta          106.1 
_cell.angle_gamma         101.09 
_cell.entry_id            2W55 
_cell.length_a            92.741 
_cell.length_b            140.568 
_cell.length_c            157.606 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2W55 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 author_and_software_defined_assembly 1 
PQS dimeric 2 author_and_software_defined_assembly 2 
PQS dimeric 2 author_and_software_defined_assembly 3 
PQS dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,K,L,M,N,GA,HA 1 1 
C,D,O,P,Q,R,S,T,IA,JA 2 1 
E,F,U,V,W,X,Y,Z,KA,LA 3 1 
G,H,AA,BA,CA,DA,EA,FA,MA,NA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 O N N 
? 3 P N N 
? 3 U N N 
? 3 V N N 
? 3 AA N N 
? 3 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 44 A CYS 44 1_555 J FE1 FES . A FES 1464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc2 A SG CYS 47 A CYS 47 1_555 J FE2 FES . A FES 1464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? 
metalc ? metalc3 A SG CYS 103 A CYS 103 1_555 I FE2 FES . A FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc4 A SG CYS 106 A CYS 106 1_555 I FE1 FES . A FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
metalc ? metalc5 A SG CYS 134 A CYS 134 1_555 I FE1 FES . A FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc6 A SG CYS 136 A CYS 136 1_555 I FE2 FES . A FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc7 B OE2 GLU 172 B GLU 172 1_555 M BA BA . B BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.392 ? 
metalc ? metalc8 B OE1 GLU 172 B GLU 172 1_555 M BA BA . B BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.474 ? 
metalc ? metalc9 B OH TYR 175 B TYR 175 1_555 M BA BA . B BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.577 ? 
metalc ? metalc10 B OG1 THR 266 B THR 266 1_555 M BA BA . B BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.392 ? 
metalc ? metalc11 B O GLY 267 B GLY 267 1_555 M BA BA . B BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.159 ? 
metalc ? metalc12 C SG CYS 44 C CYS 44 1_555 P FE1 FES . C FES 1464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? 
metalc ? metalc13 C SG CYS 47 C CYS 47 1_555 P FE2 FES . C FES 1464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? 
metalc ? metalc14 C SG CYS 103 C CYS 103 1_555 O FE2 FES . C FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc15 C SG CYS 106 C CYS 106 1_555 O FE1 FES . C FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc16 C SG CYS 134 C CYS 134 1_555 O FE1 FES . C FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
metalc ? metalc17 C SG CYS 136 C CYS 136 1_555 O FE2 FES . C FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc18 D OE2 GLU 172 D GLU 172 1_555 S BA BA . D BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.428 ? 
metalc ? metalc19 D OH TYR 175 D TYR 175 1_555 S BA BA . D BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.561 ? 
metalc ? metalc20 D OG1 THR 266 D THR 266 1_555 S BA BA . D BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.25 ? 
metalc ? metalc21 D O GLY 267 D GLY 267 1_555 S BA BA . D BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? 
metalc ? metalc22 E SG CYS 44 E CYS 44 1_555 V FE1 FES . E FES 1464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc23 E SG CYS 103 E CYS 103 1_555 U FE2 FES . E FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc24 E SG CYS 106 E CYS 106 1_555 U FE1 FES . E FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc25 E SG CYS 134 E CYS 134 1_555 U FE1 FES . E FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc26 E SG CYS 136 E CYS 136 1_555 U FE2 FES . E FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc27 F OE2 GLU 172 F GLU 172 1_555 Y BA BA . F BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.256 ? 
metalc ? metalc28 F OG1 THR 266 F THR 266 1_555 Y BA BA . F BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.448 ? 
metalc ? metalc29 F O GLY 267 F GLY 267 1_555 Y BA BA . F BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.132 ? 
metalc ? metalc30 G SG CYS 44 G CYS 44 1_555 BA FE1 FES . G FES 1464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc31 G SG CYS 103 G CYS 103 1_555 AA FE2 FES . G FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc32 G SG CYS 106 G CYS 106 1_555 AA FE1 FES . G FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? 
metalc ? metalc33 G SG CYS 134 G CYS 134 1_555 AA FE1 FES . G FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? 
metalc ? metalc34 G SG CYS 136 G CYS 136 1_555 AA FE2 FES . G FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? 
metalc ? metalc35 H OE2 GLU 172 H GLU 172 1_555 EA BA BA . H BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.426 ? 
metalc ? metalc36 H OH TYR 175 H TYR 175 1_555 EA BA BA . H BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.561 ? 
metalc ? metalc37 H OG1 THR 266 H THR 266 1_555 EA BA BA . H BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.274 ? 
metalc ? metalc38 H O GLY 267 H GLY 267 1_555 EA BA BA . H BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.185 ? 
#
_chem_comp.formula           'Fe2 S2' 
_chem_comp.formula_weight    175.82 
_chem_comp.id                FES 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FE2/S2 (INORGANIC) CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE1 S1 FES sing 174 n n 
FE1 S2 FES sing 175 n n 
FE2 S1 FES sing 176 n n 
FE2 S2 FES sing 177 n n 
#
_atom_sites.entry_id                     2W55 
_atom_sites.fract_transf_matrix[1][1]    0.010783 
_atom_sites.fract_transf_matrix[1][2]    0.002114 
_atom_sites.fract_transf_matrix[1][3]    0.004361 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007249 
_atom_sites.fract_transf_matrix[2][3]    0.003256 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00724 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 FES A 1 1463 1463 FES FES . 
J 3 FES A 1 1464 1464 FES FES . 
K 4 FAD A 1 1465 1465 FAD FAD . 
L 5 XAX B 1 1778 1778 XAX XAX . 
M 6 BA B 1 1779 1779 BA BA . 
N 7 HPA B 1 1780 1780 HPA HPA . 
O 3 FES C 1 1463 1463 FES FES . 
P 3 FES C 1 1464 1464 FES FES . 
Q 4 FAD C 1 1465 1465 FAD FAD . 
R 5 XAX D 1 1778 1778 XAX XAX . 
S 6 BA D 1 1779 1779 BA BA . 
T 7 HPA D 1 1780 1780 HPA HPA . 
U 3 FES E 1 1463 1463 FES FES . 
V 3 FES E 1 1464 1464 FES FES . 
W 4 FAD E 1 1465 1465 FAD FAD . 
X 5 XAX F 1 1778 1778 XAX XAX . 
Y 6 BA F 1 1779 1779 BA BA . 
Z 7 HPA F 1 1780 1780 HPA HPA . 
AA 3 FES G 1 1463 1463 FES FES . 
BA 3 FES G 1 1464 1464 FES FES . 
CA 4 FAD G 1 1465 1465 FAD FAD . 
DA 5 XAX H 1 1778 1778 XAX XAX . 
EA 6 BA H 1 1779 1779 BA BA . 
FA 7 HPA H 1 1780 1780 HPA HPA . 
GA 8 HOH A 1 2001 2001 HOH HOH . 
GA 8 HOH A 2 2002 2002 HOH HOH . 
GA 8 HOH A 3 2003 2003 HOH HOH . 
GA 8 HOH A 4 2004 2004 HOH HOH . 
HA 8 HOH B 1 2001 2001 HOH HOH . 
HA 8 HOH B 2 2002 2002 HOH HOH . 
HA 8 HOH B 3 2003 2003 HOH HOH . 
HA 8 HOH B 4 2004 2004 HOH HOH . 
HA 8 HOH B 5 2005 2005 HOH HOH . 
HA 8 HOH B 6 2006 2006 HOH HOH . 
HA 8 HOH B 7 2007 2007 HOH HOH . 
HA 8 HOH B 8 2008 2008 HOH HOH . 
IA 8 HOH C 1 2001 2001 HOH HOH . 
IA 8 HOH C 2 2002 2002 HOH HOH . 
IA 8 HOH C 3 2003 2003 HOH HOH . 
JA 8 HOH D 1 2001 2001 HOH HOH . 
JA 8 HOH D 2 2002 2002 HOH HOH . 
JA 8 HOH D 3 2003 2003 HOH HOH . 
JA 8 HOH D 4 2004 2004 HOH HOH . 
JA 8 HOH D 5 2005 2005 HOH HOH . 
JA 8 HOH D 6 2006 2006 HOH HOH . 
JA 8 HOH D 7 2007 2007 HOH HOH . 
JA 8 HOH D 8 2008 2008 HOH HOH . 
JA 8 HOH D 9 2009 2009 HOH HOH . 
JA 8 HOH D 10 2010 2010 HOH HOH . 
JA 8 HOH D 11 2011 2011 HOH HOH . 
KA 8 HOH E 1 2001 2001 HOH HOH . 
LA 8 HOH F 1 2001 2001 HOH HOH . 
LA 8 HOH F 2 2002 2002 HOH HOH . 
LA 8 HOH F 3 2003 2003 HOH HOH . 
LA 8 HOH F 4 2004 2004 HOH HOH . 
LA 8 HOH F 5 2005 2005 HOH HOH . 
LA 8 HOH F 6 2006 2006 HOH HOH . 
LA 8 HOH F 7 2007 2007 HOH HOH . 
LA 8 HOH F 8 2008 2008 HOH HOH . 
LA 8 HOH F 9 2009 2009 HOH HOH . 
LA 8 HOH F 10 2010 2010 HOH HOH . 
LA 8 HOH F 11 2011 2011 HOH HOH . 
LA 8 HOH F 12 2012 2012 HOH HOH . 
MA 8 HOH G 1 2001 2001 HOH HOH . 
NA 8 HOH H 1 2001 2001 HOH HOH . 
NA 8 HOH H 2 2002 2002 HOH HOH . 
NA 8 HOH H 3 2003 2003 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 FES . . . I 3 16.184 21.489 3.799 0.7 30.61 ? FE1 FES 1463 A 1 
HETATM 2 FE FE2 FES . . . I 3 15.987 19.127 5.661 0.7 30.54 ? FE2 FES 1463 A 1 
HETATM 3 S S1 FES . . . I 3 14.829 20.974 5.437 0.7 29.35 ? S1 FES 1463 A 1 
HETATM 4 S S2 FES . . . I 3 17.065 19.487 3.796 0.7 30.3 ? S2 FES 1463 A 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#