data_2W55 # _model_server_result.job_id UpHhHWK47C-a5sYMycJm9Q _model_server_result.datetime_utc '2024-11-23 23:17:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w55 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1780}' # _entry.id 2W55 # _exptl.entry_id 2W55 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 136.111 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HYPOXANTHINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 109.45 _cell.angle_beta 106.1 _cell.angle_gamma 101.09 _cell.entry_id 2W55 _cell.length_a 92.741 _cell.length_b 140.568 _cell.length_c 157.606 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W55 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 PQS dimeric 2 author_and_software_defined_assembly 3 PQS dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K,L,M,N,GA,HA 1 1 C,D,O,P,Q,R,S,T,IA,JA 2 1 E,F,U,V,W,X,Y,Z,KA,LA 3 1 G,H,AA,BA,CA,DA,EA,FA,MA,NA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 N N N ? 7 T N N ? 7 Z N N ? 7 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 44 A CYS 44 1_555 J FE1 FES . A FES 1464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc2 A SG CYS 47 A CYS 47 1_555 J FE2 FES . A FES 1464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc3 A SG CYS 103 A CYS 103 1_555 I FE2 FES . A FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc4 A SG CYS 106 A CYS 106 1_555 I FE1 FES . A FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc5 A SG CYS 134 A CYS 134 1_555 I FE1 FES . A FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc6 A SG CYS 136 A CYS 136 1_555 I FE2 FES . A FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc7 B OE2 GLU 172 B GLU 172 1_555 M BA BA . B BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.392 ? metalc ? metalc8 B OE1 GLU 172 B GLU 172 1_555 M BA BA . B BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.474 ? metalc ? metalc9 B OH TYR 175 B TYR 175 1_555 M BA BA . B BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.577 ? metalc ? metalc10 B OG1 THR 266 B THR 266 1_555 M BA BA . B BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.392 ? metalc ? metalc11 B O GLY 267 B GLY 267 1_555 M BA BA . B BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.159 ? metalc ? metalc12 C SG CYS 44 C CYS 44 1_555 P FE1 FES . C FES 1464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc13 C SG CYS 47 C CYS 47 1_555 P FE2 FES . C FES 1464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc14 C SG CYS 103 C CYS 103 1_555 O FE2 FES . C FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc15 C SG CYS 106 C CYS 106 1_555 O FE1 FES . C FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc16 C SG CYS 134 C CYS 134 1_555 O FE1 FES . C FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc17 C SG CYS 136 C CYS 136 1_555 O FE2 FES . C FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc18 D OE2 GLU 172 D GLU 172 1_555 S BA BA . D BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.428 ? metalc ? metalc19 D OH TYR 175 D TYR 175 1_555 S BA BA . D BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.561 ? metalc ? metalc20 D OG1 THR 266 D THR 266 1_555 S BA BA . D BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.25 ? metalc ? metalc21 D O GLY 267 D GLY 267 1_555 S BA BA . D BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? metalc ? metalc22 E SG CYS 44 E CYS 44 1_555 V FE1 FES . E FES 1464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc23 E SG CYS 103 E CYS 103 1_555 U FE2 FES . E FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc24 E SG CYS 106 E CYS 106 1_555 U FE1 FES . E FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc25 E SG CYS 134 E CYS 134 1_555 U FE1 FES . E FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc26 E SG CYS 136 E CYS 136 1_555 U FE2 FES . E FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc27 F OE2 GLU 172 F GLU 172 1_555 Y BA BA . F BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.256 ? metalc ? metalc28 F OG1 THR 266 F THR 266 1_555 Y BA BA . F BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.448 ? metalc ? metalc29 F O GLY 267 F GLY 267 1_555 Y BA BA . F BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.132 ? metalc ? metalc30 G SG CYS 44 G CYS 44 1_555 BA FE1 FES . G FES 1464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc31 G SG CYS 103 G CYS 103 1_555 AA FE2 FES . G FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc32 G SG CYS 106 G CYS 106 1_555 AA FE1 FES . G FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc33 G SG CYS 134 G CYS 134 1_555 AA FE1 FES . G FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? metalc ? metalc34 G SG CYS 136 G CYS 136 1_555 AA FE2 FES . G FES 1463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc35 H OE2 GLU 172 H GLU 172 1_555 EA BA BA . H BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.426 ? metalc ? metalc36 H OH TYR 175 H TYR 175 1_555 EA BA BA . H BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.561 ? metalc ? metalc37 H OG1 THR 266 H THR 266 1_555 EA BA BA . H BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.274 ? metalc ? metalc38 H O GLY 267 H GLY 267 1_555 EA BA BA . H BA 1779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.185 ? # _chem_comp.formula 'C5 H4 N4 O' _chem_comp.formula_weight 136.111 _chem_comp.id HPA _chem_comp.mon_nstd_flag . _chem_comp.name HYPOXANTHINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 HPA sing 247 n y N1 C6 HPA sing 248 n y N1 HN1 HPA sing 249 n n C2 N3 HPA doub 250 n y C2 H2 HPA sing 251 n n N3 C4 HPA sing 252 n y C4 C5 HPA doub 253 n y C4 N9 HPA sing 254 n y C5 C6 HPA sing 255 n y C5 N7 HPA sing 256 n y C6 O6 HPA doub 257 n n N7 C8 HPA sing 258 n y N7 HN7 HPA sing 259 n n C8 N9 HPA doub 260 n y C8 H8 HPA sing 261 n n # _atom_sites.entry_id 2W55 _atom_sites.fract_transf_matrix[1][1] 0.010783 _atom_sites.fract_transf_matrix[1][2] 0.002114 _atom_sites.fract_transf_matrix[1][3] 0.004361 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007249 _atom_sites.fract_transf_matrix[2][3] 0.003256 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 FES A 1 1463 1463 FES FES . J 3 FES A 1 1464 1464 FES FES . K 4 FAD A 1 1465 1465 FAD FAD . L 5 XAX B 1 1778 1778 XAX XAX . M 6 BA B 1 1779 1779 BA BA . N 7 HPA B 1 1780 1780 HPA HPA . O 3 FES C 1 1463 1463 FES FES . P 3 FES C 1 1464 1464 FES FES . Q 4 FAD C 1 1465 1465 FAD FAD . R 5 XAX D 1 1778 1778 XAX XAX . S 6 BA D 1 1779 1779 BA BA . T 7 HPA D 1 1780 1780 HPA HPA . U 3 FES E 1 1463 1463 FES FES . V 3 FES E 1 1464 1464 FES FES . W 4 FAD E 1 1465 1465 FAD FAD . X 5 XAX F 1 1778 1778 XAX XAX . Y 6 BA F 1 1779 1779 BA BA . Z 7 HPA F 1 1780 1780 HPA HPA . AA 3 FES G 1 1463 1463 FES FES . BA 3 FES G 1 1464 1464 FES FES . CA 4 FAD G 1 1465 1465 FAD FAD . DA 5 XAX H 1 1778 1778 XAX XAX . EA 6 BA H 1 1779 1779 BA BA . FA 7 HPA H 1 1780 1780 HPA HPA . GA 8 HOH A 1 2001 2001 HOH HOH . GA 8 HOH A 2 2002 2002 HOH HOH . GA 8 HOH A 3 2003 2003 HOH HOH . GA 8 HOH A 4 2004 2004 HOH HOH . HA 8 HOH B 1 2001 2001 HOH HOH . HA 8 HOH B 2 2002 2002 HOH HOH . HA 8 HOH B 3 2003 2003 HOH HOH . HA 8 HOH B 4 2004 2004 HOH HOH . HA 8 HOH B 5 2005 2005 HOH HOH . HA 8 HOH B 6 2006 2006 HOH HOH . HA 8 HOH B 7 2007 2007 HOH HOH . HA 8 HOH B 8 2008 2008 HOH HOH . IA 8 HOH C 1 2001 2001 HOH HOH . IA 8 HOH C 2 2002 2002 HOH HOH . IA 8 HOH C 3 2003 2003 HOH HOH . JA 8 HOH D 1 2001 2001 HOH HOH . JA 8 HOH D 2 2002 2002 HOH HOH . JA 8 HOH D 3 2003 2003 HOH HOH . JA 8 HOH D 4 2004 2004 HOH HOH . JA 8 HOH D 5 2005 2005 HOH HOH . JA 8 HOH D 6 2006 2006 HOH HOH . JA 8 HOH D 7 2007 2007 HOH HOH . JA 8 HOH D 8 2008 2008 HOH HOH . JA 8 HOH D 9 2009 2009 HOH HOH . JA 8 HOH D 10 2010 2010 HOH HOH . JA 8 HOH D 11 2011 2011 HOH HOH . KA 8 HOH E 1 2001 2001 HOH HOH . LA 8 HOH F 1 2001 2001 HOH HOH . LA 8 HOH F 2 2002 2002 HOH HOH . LA 8 HOH F 3 2003 2003 HOH HOH . LA 8 HOH F 4 2004 2004 HOH HOH . LA 8 HOH F 5 2005 2005 HOH HOH . LA 8 HOH F 6 2006 2006 HOH HOH . LA 8 HOH F 7 2007 2007 HOH HOH . LA 8 HOH F 8 2008 2008 HOH HOH . LA 8 HOH F 9 2009 2009 HOH HOH . LA 8 HOH F 10 2010 2010 HOH HOH . LA 8 HOH F 11 2011 2011 HOH HOH . LA 8 HOH F 12 2012 2012 HOH HOH . MA 8 HOH G 1 2001 2001 HOH HOH . NA 8 HOH H 1 2001 2001 HOH HOH . NA 8 HOH H 2 2002 2002 HOH HOH . NA 8 HOH H 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 HPA . . . N 7 17.875 11.089 23.495 1 43.46 ? N1 HPA 1780 B 1 HETATM 2 C C2 HPA . . . N 7 16.539 10.885 23.171 1 43.32 ? C2 HPA 1780 B 1 HETATM 3 N N3 HPA . . . N 7 15.706 10.161 24.014 1 43.18 ? N3 HPA 1780 B 1 HETATM 4 C C4 HPA . . . N 7 16.192 9.634 25.177 1 43.6 ? C4 HPA 1780 B 1 HETATM 5 C C5 HPA . . . N 7 17.532 9.822 25.53 1 43.71 ? C5 HPA 1780 B 1 HETATM 6 C C6 HPA . . . N 7 18.381 10.554 24.681 1 43.55 ? C6 HPA 1780 B 1 HETATM 7 O O6 HPA . . . N 7 19.568 10.723 24.991 1 43.38 ? O6 HPA 1780 B 1 HETATM 8 N N7 HPA . . . N 7 17.728 9.201 26.722 1 43.77 ? N7 HPA 1780 B 1 HETATM 9 C C8 HPA . . . N 7 16.56 8.637 27.116 1 43.7 ? C8 HPA 1780 B 1 HETATM 10 N N9 HPA . . . N 7 15.623 8.906 26.171 1 43.86 ? N9 HPA 1780 B 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 382 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #