data_2W6C # _model_server_result.job_id 2XaljE8OiRRu-EaKuZy9HQ _model_server_result.datetime_utc '2025-03-06 01:11:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w6c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":605}' # _entry.id 2W6C # _exptl.entry_id 2W6C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2W6C _cell.length_a 112.172 _cell.length_b 112.172 _cell.length_c 137.568 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 A 1 NAG X 1538 NAG 2 n B NAG 2 A 2 NAG X 1539 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 88 X CYS 67 1_555 A SG CYS 115 X CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf2 A SG CYS 275 X CYS 254 1_555 A SG CYS 286 X CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf3 A SG CYS 423 X CYS 402 1_555 A SG CYS 542 X CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 80 X ASN 59 1_555 D C1 NAG . X NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 A ND2 ASN 437 X ASN 416 1_555 B C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 A ND2 ASN 478 X ASN 457 1_555 E C1 NAG . X NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? covale ? covale4 B O4 NAG . A NAG 1 1_555 B C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 339 n n C1 O1 NAG sing 340 n n C1 O5 NAG sing 341 n n C1 H1 NAG sing 342 n n C2 C3 NAG sing 343 n n C2 N2 NAG sing 344 n n C2 H2 NAG sing 345 n n C3 C4 NAG sing 346 n n C3 O3 NAG sing 347 n n C3 H3 NAG sing 348 n n C4 C5 NAG sing 349 n n C4 O4 NAG sing 350 n n C4 H4 NAG sing 351 n n C5 C6 NAG sing 352 n n C5 O5 NAG sing 353 n n C5 H5 NAG sing 354 n n C6 O6 NAG sing 355 n n C6 H61 NAG sing 356 n n C6 H62 NAG sing 357 n n C7 C8 NAG sing 358 n n C7 N2 NAG sing 359 n n C7 O7 NAG doub 360 n n C8 H81 NAG sing 361 n n C8 H82 NAG sing 362 n n C8 H83 NAG sing 363 n n N2 HN2 NAG sing 364 n n O1 HO1 NAG sing 365 n n O3 HO3 NAG sing 366 n n O4 HO4 NAG sing 367 n n O6 HO6 NAG sing 368 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2W6C _atom_sites.fract_transf_matrix[1][1] 0.008915 _atom_sites.fract_transf_matrix[1][2] 0.005147 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010294 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007269 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BM4 X 1 601 1536 BM4 BM4 . D 4 NAG X 1 602 1537 NAG NAG . E 4 NAG X 1 605 1540 NAG NAG . F 5 HOH X 1 701 2100 HOH HOH . F 5 HOH X 2 702 2106 HOH HOH . F 5 HOH X 3 703 2079 HOH HOH . F 5 HOH X 4 704 2032 HOH HOH . F 5 HOH X 5 705 2013 HOH HOH . F 5 HOH X 6 706 2095 HOH HOH . F 5 HOH X 7 707 2049 HOH HOH . F 5 HOH X 8 708 2042 HOH HOH . F 5 HOH X 9 709 2078 HOH HOH . F 5 HOH X 10 710 2075 HOH HOH . F 5 HOH X 11 711 2076 HOH HOH . F 5 HOH X 12 712 2070 HOH HOH . F 5 HOH X 13 713 2022 HOH HOH . F 5 HOH X 14 714 2099 HOH HOH . F 5 HOH X 15 715 2066 HOH HOH . F 5 HOH X 16 716 2092 HOH HOH . F 5 HOH X 17 717 2059 HOH HOH . F 5 HOH X 18 718 2097 HOH HOH . F 5 HOH X 19 719 2065 HOH HOH . F 5 HOH X 20 720 2029 HOH HOH . F 5 HOH X 21 721 2044 HOH HOH . F 5 HOH X 22 722 2006 HOH HOH . F 5 HOH X 23 723 2027 HOH HOH . F 5 HOH X 24 724 2040 HOH HOH . F 5 HOH X 25 725 2017 HOH HOH . F 5 HOH X 26 726 2113 HOH HOH . F 5 HOH X 27 727 2091 HOH HOH . F 5 HOH X 28 728 2102 HOH HOH . F 5 HOH X 29 729 2068 HOH HOH . F 5 HOH X 30 730 2073 HOH HOH . F 5 HOH X 31 731 2009 HOH HOH . F 5 HOH X 32 732 2024 HOH HOH . F 5 HOH X 33 733 2037 HOH HOH . F 5 HOH X 34 734 2072 HOH HOH . F 5 HOH X 35 735 2063 HOH HOH . F 5 HOH X 36 736 2007 HOH HOH . F 5 HOH X 37 737 2088 HOH HOH . F 5 HOH X 38 738 2094 HOH HOH . F 5 HOH X 39 739 2051 HOH HOH . F 5 HOH X 40 740 2039 HOH HOH . F 5 HOH X 41 741 2020 HOH HOH . F 5 HOH X 42 742 2061 HOH HOH . F 5 HOH X 43 743 2053 HOH HOH . F 5 HOH X 44 744 2081 HOH HOH . F 5 HOH X 45 745 2021 HOH HOH . F 5 HOH X 46 746 2096 HOH HOH . F 5 HOH X 47 747 2031 HOH HOH . F 5 HOH X 48 748 2060 HOH HOH . F 5 HOH X 49 749 2041 HOH HOH . F 5 HOH X 50 750 2069 HOH HOH . F 5 HOH X 51 751 2038 HOH HOH . F 5 HOH X 52 752 2026 HOH HOH . F 5 HOH X 53 753 2067 HOH HOH . F 5 HOH X 54 754 2025 HOH HOH . F 5 HOH X 55 755 2018 HOH HOH . F 5 HOH X 56 756 2023 HOH HOH . F 5 HOH X 57 757 2111 HOH HOH . F 5 HOH X 58 758 2101 HOH HOH . F 5 HOH X 59 759 2107 HOH HOH . F 5 HOH X 60 760 2030 HOH HOH . F 5 HOH X 61 761 2110 HOH HOH . F 5 HOH X 62 762 2057 HOH HOH . F 5 HOH X 63 763 2048 HOH HOH . F 5 HOH X 64 764 2001 HOH HOH . F 5 HOH X 65 765 2084 HOH HOH . F 5 HOH X 66 766 2114 HOH HOH . F 5 HOH X 67 767 2034 HOH HOH . F 5 HOH X 68 768 2077 HOH HOH . F 5 HOH X 69 769 2055 HOH HOH . F 5 HOH X 70 770 2035 HOH HOH . F 5 HOH X 71 771 2089 HOH HOH . F 5 HOH X 72 772 2098 HOH HOH . F 5 HOH X 73 773 2052 HOH HOH . F 5 HOH X 74 774 2112 HOH HOH . F 5 HOH X 75 775 2015 HOH HOH . F 5 HOH X 76 776 2080 HOH HOH . F 5 HOH X 77 777 2056 HOH HOH . F 5 HOH X 78 778 2046 HOH HOH . F 5 HOH X 79 779 2005 HOH HOH . F 5 HOH X 80 780 2045 HOH HOH . F 5 HOH X 81 781 2093 HOH HOH . F 5 HOH X 82 782 2062 HOH HOH . F 5 HOH X 83 783 2003 HOH HOH . F 5 HOH X 84 784 2008 HOH HOH . F 5 HOH X 85 785 2012 HOH HOH . F 5 HOH X 86 786 2036 HOH HOH . F 5 HOH X 87 787 2028 HOH HOH . F 5 HOH X 88 788 2087 HOH HOH . F 5 HOH X 89 789 2004 HOH HOH . F 5 HOH X 90 790 2085 HOH HOH . F 5 HOH X 91 791 2047 HOH HOH . F 5 HOH X 92 792 2074 HOH HOH . F 5 HOH X 93 793 2033 HOH HOH . F 5 HOH X 94 794 2086 HOH HOH . F 5 HOH X 95 795 2064 HOH HOH . F 5 HOH X 96 796 2014 HOH HOH . F 5 HOH X 97 797 2082 HOH HOH . F 5 HOH X 98 798 2019 HOH HOH . F 5 HOH X 99 799 2054 HOH HOH . F 5 HOH X 100 800 2050 HOH HOH . F 5 HOH X 101 801 2090 HOH HOH . F 5 HOH X 102 802 2108 HOH HOH . F 5 HOH X 103 803 2071 HOH HOH . F 5 HOH X 104 804 2109 HOH HOH . F 5 HOH X 105 805 2083 HOH HOH . F 5 HOH X 106 806 2115 HOH HOH . F 5 HOH X 107 807 2058 HOH HOH . F 5 HOH X 108 808 2016 HOH HOH . F 5 HOH X 109 809 2103 HOH HOH . F 5 HOH X 110 810 2104 HOH HOH . F 5 HOH X 111 811 2002 HOH HOH . F 5 HOH X 112 812 2010 HOH HOH . F 5 HOH X 113 813 2011 HOH HOH . F 5 HOH X 114 814 2105 HOH HOH . F 5 HOH X 115 815 2043 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 6.897 90.411 68.575 0.7 57.47 ? C1 NAG 605 X 1 HETATM 2 C C2 NAG . . . E 4 5.766 89.432 68.964 0.7 57.94 ? C2 NAG 605 X 1 HETATM 3 C C3 NAG . . . E 4 4.808 89.948 70.036 0.7 58.42 ? C3 NAG 605 X 1 HETATM 4 C C4 NAG . . . E 4 5.626 90.296 71.237 0.7 58.47 ? C4 NAG 605 X 1 HETATM 5 C C5 NAG . . . E 4 6.239 91.568 70.66 0.7 59.18 ? C5 NAG 605 X 1 HETATM 6 C C6 NAG . . . E 4 6.742 92.514 71.758 0.7 60.08 ? C6 NAG 605 X 1 HETATM 7 C C7 NAG . . . E 4 4.456 87.866 67.986 0.7 56.93 ? C7 NAG 605 X 1 HETATM 8 C C8 NAG . . . E 4 3.058 87.54 67.511 0.7 57.31 ? C8 NAG 605 X 1 HETATM 9 N N2 NAG . . . E 4 4.93 89.08 67.847 0.7 57.34 ? N2 NAG 605 X 1 HETATM 10 O O3 NAG . . . E 4 3.803 89.045 70.422 0.7 59.05 ? O3 NAG 605 X 1 HETATM 11 O O4 NAG . . . E 4 4.774 90.456 72.364 0.7 55.9 ? O4 NAG 605 X 1 HETATM 12 O O5 NAG . . . E 4 7.243 91.243 69.689 0.7 58.4 ? O5 NAG 605 X 1 HETATM 13 O O6 NAG . . . E 4 7.562 91.824 72.678 0.7 60.52 ? O6 NAG 605 X 1 HETATM 14 O O7 NAG . . . E 4 5.183 87.059 68.546 0.7 55.09 ? O7 NAG 605 X 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #