data_2W6D
#
_model_server_result.job_id            iNz2hN1ochZMGUeLUR3a1A 
_model_server_result.datetime_utc      '2024-12-22 13:31:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2w6d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":3077}' 
#
_entry.id    2W6D 
#
_exptl.entry_id    2W6D 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              758.06 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    44 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2W6D 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2W6D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 CA N N 
? 2 DA N N 
? 2 EA N N 
? 2 FA N N 
? 2 GA N N 
? 2 HA N N 
? 2 IA N N 
? 2 JA N N 
? 2 KA N N 
? 2 LA N N 
? 2 MA N N 
? 2 OA N N 
? 2 PA N N 
? 2 QA N N 
? 2 RA N N 
? 2 SA N N 
? 2 TA N N 
? 2 UA N N 
? 2 VA N N 
#
_chem_comp.formula           'C42 H80 N O8 P' 
_chem_comp.formula_weight    758.06 
_chem_comp.id                CPL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PALMITOYL-LINOLEOYL PHOSPHATIDYLCHOLINE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 CPL sing 70 n n 
C1 O3P CPL sing 71 n n 
C1 HC11 CPL sing 72 n n 
C1 HC12 CPL sing 73 n n 
C2 C3 CPL sing 74 n n 
C2 O2 CPL sing 75 n n 
C2 HC2 CPL sing 76 n n 
C3 O3 CPL sing 77 n n 
C3 HC31 CPL sing 78 n n 
C3 HC32 CPL sing 79 n n 
C4 C5 CPL sing 80 n n 
C4 O4P CPL sing 81 n n 
C4 HC41 CPL sing 82 n n 
C4 HC42 CPL sing 83 n n 
C5 N CPL sing 84 n n 
C5 HC51 CPL sing 85 n n 
C5 HC52 CPL sing 86 n n 
C6 N CPL sing 87 n n 
C6 HC61 CPL sing 88 n n 
C6 HC62 CPL sing 89 n n 
C6 HC63 CPL sing 90 n n 
C7 N CPL sing 91 n n 
C7 HC71 CPL sing 92 n n 
C7 HC72 CPL sing 93 n n 
C7 HC73 CPL sing 94 n n 
C8 N CPL sing 95 n n 
C8 HC81 CPL sing 96 n n 
C8 HC82 CPL sing 97 n n 
C8 HC83 CPL sing 98 n n 
C11 C12 CPL sing 99 n n 
C11 O3 CPL sing 100 n n 
C11 O11 CPL doub 101 n n 
C12 C13 CPL sing 102 n n 
C12 H121 CPL sing 103 n n 
C12 H122 CPL sing 104 n n 
C13 C14 CPL sing 105 n n 
C13 H131 CPL sing 106 n n 
C13 H132 CPL sing 107 n n 
C14 C15 CPL sing 108 n n 
C14 H141 CPL sing 109 n n 
C14 H142 CPL sing 110 n n 
C15 C16 CPL sing 111 n n 
C15 H151 CPL sing 112 n n 
C15 H152 CPL sing 113 n n 
C16 C17 CPL sing 114 n n 
C16 H161 CPL sing 115 n n 
C16 H162 CPL sing 116 n n 
C17 C18 CPL sing 117 n n 
C17 H171 CPL sing 118 n n 
C17 H172 CPL sing 119 n n 
C18 C19 CPL sing 120 n n 
C18 H181 CPL sing 121 n n 
C18 H182 CPL sing 122 n n 
C19 C20 CPL sing 123 n n 
C19 H191 CPL sing 124 n n 
C19 H192 CPL sing 125 n n 
C20 C21 CPL sing 126 n n 
C20 H201 CPL sing 127 n n 
C20 H202 CPL sing 128 n n 
C21 C22 CPL sing 129 n n 
C21 H211 CPL sing 130 n n 
C21 H212 CPL sing 131 n n 
C22 C23 CPL sing 132 n n 
C22 H221 CPL sing 133 n n 
C22 H222 CPL sing 134 n n 
C23 C24 CPL sing 135 n n 
C23 H231 CPL sing 136 n n 
C23 H232 CPL sing 137 n n 
C24 C25 CPL sing 138 n n 
C24 H241 CPL sing 139 n n 
C24 H242 CPL sing 140 n n 
C25 C26 CPL sing 141 n n 
C25 H251 CPL sing 142 n n 
C25 H252 CPL sing 143 n n 
C26 H261 CPL sing 144 n n 
C26 H262 CPL sing 145 n n 
C26 H263 CPL sing 146 n n 
C31 C32 CPL sing 147 n n 
C31 O2 CPL sing 148 n n 
C31 O31 CPL doub 149 n n 
C32 C33 CPL sing 150 n n 
C32 H321 CPL sing 151 n n 
C32 H322 CPL sing 152 n n 
C33 C34 CPL sing 153 n n 
C33 H331 CPL sing 154 n n 
C33 H332 CPL sing 155 n n 
C34 C35 CPL sing 156 n n 
C34 H341 CPL sing 157 n n 
C34 H342 CPL sing 158 n n 
C35 C36 CPL sing 159 n n 
C35 H351 CPL sing 160 n n 
C35 H352 CPL sing 161 n n 
C36 C37 CPL sing 162 n n 
C36 H361 CPL sing 163 n n 
C36 H362 CPL sing 164 n n 
C37 C38 CPL sing 165 n n 
C37 H371 CPL sing 166 n n 
C37 H372 CPL sing 167 n n 
C38 C39 CPL sing 168 n n 
C38 H381 CPL sing 169 n n 
C38 H382 CPL sing 170 n n 
C39 C40 CPL doub 171 z n 
C39 H39 CPL sing 172 n n 
C40 C41 CPL sing 173 n n 
C40 H40 CPL sing 174 n n 
C41 C42 CPL sing 175 n n 
C41 H411 CPL sing 176 n n 
C41 H412 CPL sing 177 n n 
C42 C43 CPL doub 178 z n 
C42 H42 CPL sing 179 n n 
C43 C44 CPL sing 180 n n 
C43 H43 CPL sing 181 n n 
C44 C45 CPL sing 182 n n 
C44 H441 CPL sing 183 n n 
C44 H442 CPL sing 184 n n 
C45 C46 CPL sing 185 n n 
C45 H451 CPL sing 186 n n 
C45 H452 CPL sing 187 n n 
C46 C47 CPL sing 188 n n 
C46 H461 CPL sing 189 n n 
C46 H462 CPL sing 190 n n 
C47 C48 CPL sing 191 n n 
C47 H471 CPL sing 192 n n 
C47 H472 CPL sing 193 n n 
C48 H481 CPL sing 194 n n 
C48 H482 CPL sing 195 n n 
C48 H483 CPL sing 196 n n 
O1P P CPL doub 197 n n 
O2P P CPL sing 198 n n 
O3P P CPL sing 199 n n 
O4P P CPL sing 200 n n 
#
_atom_sites.entry_id                     2W6D 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CPL A 1 3077 3077 CPL CPL . 
D 3 GDP A 1 1696 1696 GDP GDP . 
E 2 CPL A 1 1697 1697 CPL CPL . 
F 2 CPL A 1 1698 1698 CPL CPL . 
G 2 CPL A 1 1699 1699 CPL CPL . 
H 2 CPL A 1 1700 1700 CPL CPL . 
I 2 CPL A 1 1701 1701 CPL CPL . 
J 2 CPL A 1 1702 1702 CPL CPL . 
K 2 CPL A 1 1703 1703 CPL CPL . 
L 2 CPL A 1 1704 1704 CPL CPL . 
M 2 CPL A 1 1705 1705 CPL CPL . 
N 2 CPL A 1 1706 1706 CPL CPL . 
O 2 CPL A 1 1707 1707 CPL CPL . 
P 2 CPL A 1 1708 1708 CPL CPL . 
Q 2 CPL A 1 1709 1709 CPL CPL . 
R 2 CPL A 1 1710 1710 CPL CPL . 
S 2 CPL A 1 1711 1711 CPL CPL . 
T 2 CPL A 1 1712 1712 CPL CPL . 
U 2 CPL A 1 1713 1713 CPL CPL . 
V 2 CPL A 1 1714 1714 CPL CPL . 
W 2 CPL A 1 1715 1715 CPL CPL . 
X 2 CPL A 1 1716 1716 CPL CPL . 
Y 2 CPL A 1 1717 1717 CPL CPL . 
Z 2 CPL A 1 1718 1718 CPL CPL . 
AA 2 CPL A 1 3094 3094 CPL CPL . 
BA 2 CPL A 1 3097 3097 CPL CPL . 
CA 2 CPL A 1 3181 3181 CPL CPL . 
DA 2 CPL B 1 1696 1696 CPL CPL . 
EA 2 CPL B 1 1697 1697 CPL CPL . 
FA 2 CPL B 1 1698 1698 CPL CPL . 
GA 2 CPL B 1 1699 1699 CPL CPL . 
HA 2 CPL B 1 1700 1700 CPL CPL . 
IA 2 CPL B 1 1701 1701 CPL CPL . 
JA 2 CPL B 1 1702 1702 CPL CPL . 
KA 2 CPL B 1 1703 1703 CPL CPL . 
LA 2 CPL B 1 1704 1704 CPL CPL . 
MA 2 CPL B 1 1705 1705 CPL CPL . 
NA 3 GDP B 1 1706 1706 GDP GDP . 
OA 2 CPL B 1 1707 1707 CPL CPL . 
PA 2 CPL B 1 1708 1708 CPL CPL . 
QA 2 CPL B 1 1709 1709 CPL CPL . 
RA 2 CPL B 1 1710 1710 CPL CPL . 
SA 2 CPL B 1 1711 1711 CPL CPL . 
TA 2 CPL B 1 1712 1712 CPL CPL . 
UA 2 CPL B 1 1713 1713 CPL CPL . 
VA 2 CPL B 1 1714 1714 CPL CPL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CPL . . . C 2 49.259 4.604 55.161 1 6.83 ? C1 CPL 3077 A 1 
HETATM 2 C C2 CPL . . . C 2 50.482 5.325 54.626 1 7 ? C2 CPL 3077 A 1 
HETATM 3 C C3 CPL . . . C 2 50.801 6.614 55.368 1 5.16 ? C3 CPL 3077 A 1 
HETATM 4 C C4 CPL . . . C 2 45.81 3.251 56.899 1 5.55 ? C4 CPL 3077 A 1 
HETATM 5 C C5 CPL . . . C 2 44.761 3.658 55.886 1 6.6 ? C5 CPL 3077 A 1 
HETATM 6 C C6 CPL . . . C 2 42.574 3.565 55.105 1 7.54 ? C6 CPL 3077 A 1 
HETATM 7 C C7 CPL . . . C 2 42.9 3.655 57.405 1 4.57 ? C7 CPL 3077 A 1 
HETATM 8 C C8 CPL . . . C 2 43.404 1.69 56.189 1 7.44 ? C8 CPL 3077 A 1 
HETATM 9 C C11 CPL . . . C 2 52.442 6.296 57.19 1 2.81 ? C11 CPL 3077 A 1 
HETATM 10 C C12 CPL . . . C 2 53.546 6.776 56.291 1 3.69 ? C12 CPL 3077 A 1 
HETATM 11 C C13 CPL . . . C 2 54.873 6.836 57.012 1 2.64 ? C13 CPL 3077 A 1 
HETATM 12 C C14 CPL . . . C 2 56.008 7.237 56.107 1 3.58 ? C14 CPL 3077 A 1 
HETATM 13 C C15 CPL . . . C 2 57.298 7.391 56.866 1 2.42 ? C15 CPL 3077 A 1 
HETATM 14 C C16 CPL . . . C 2 58.46 7.745 55.978 1 3.36 ? C16 CPL 3077 A 1 
HETATM 15 C C17 CPL . . . C 2 59.717 7.993 56.767 1 2.12 ? C17 CPL 3077 A 1 
HETATM 16 C C18 CPL . . . C 2 60.88 8.405 55.905 1 2.95 ? C18 CPL 3077 A 1 
HETATM 17 C C19 CPL . . . C 2 62.093 8.712 56.743 1 1.67 ? C19 CPL 3077 A 1 
HETATM 18 C C20 CPL . . . C 2 63.263 9.212 55.936 1 2.32 ? C20 CPL 3077 A 1 
HETATM 19 C C21 CPL . . . C 2 64.413 9.593 56.833 1 1.06 ? C21 CPL 3077 A 1 
HETATM 20 C C22 CPL . . . C 2 65.594 10.133 56.072 1 1.55 ? C22 CPL 3077 A 1 
HETATM 21 C C23 CPL . . . C 2 66.685 10.605 56.999 1 0.46 ? C23 CPL 3077 A 1 
HETATM 22 C C24 CPL . . . C 2 67.872 11.155 56.255 1 0.8 ? C24 CPL 3077 A 1 
HETATM 23 C C25 CPL . . . C 2 68.927 11.697 57.185 1 0.07 ? C25 CPL 3077 A 1 
HETATM 24 C C26 CPL . . . C 2 70.126 12.249 56.457 1 0.24 ? C26 CPL 3077 A 1 
HETATM 25 C C31 CPL . . . C 2 51.736 3.277 54.046 1 8.39 ? C31 CPL 3077 A 1 
HETATM 26 C C32 CPL . . . C 2 53.095 2.648 54.028 1 8.53 ? C32 CPL 3077 A 1 
HETATM 27 C C33 CPL . . . C 2 53.876 2.877 55.302 1 7.62 ? C33 CPL 3077 A 1 
HETATM 28 C C34 CPL . . . C 2 55.237 2.228 55.223 1 7.97 ? C34 CPL 3077 A 1 
HETATM 29 C C35 CPL . . . C 2 56.191 2.72 56.28 1 6.61 ? C35 CPL 3077 A 1 
HETATM 30 C C36 CPL . . . C 2 57.529 2.018 56.218 1 7.11 ? C36 CPL 3077 A 1 
HETATM 31 C C37 CPL . . . C 2 58.568 2.632 57.129 1 5.54 ? C37 CPL 3077 A 1 
HETATM 32 C C38 CPL . . . C 2 59.079 3.964 56.642 1 5.24 ? C38 CPL 3077 A 1 
HETATM 33 C C39 CPL . . . C 2 59.937 4.59 57.679 1 3.29 ? C39 CPL 3077 A 1 
HETATM 34 C C40 CPL . . . C 2 61.256 4.582 57.666 1 3.3 ? C40 CPL 3077 A 1 
HETATM 35 C C41 CPL . . . C 2 62.067 3.931 56.605 1 5.28 ? C41 CPL 3077 A 1 
HETATM 36 C C42 CPL . . . C 2 63.523 4.288 56.801 1 4.72 ? C42 CPL 3077 A 1 
HETATM 37 C C43 CPL . . . C 2 64.435 3.532 55.865 1 6.52 ? C43 CPL 3077 A 1 
HETATM 38 C C44 CPL . . . C 2 65.893 3.884 56.041 1 6.04 ? C44 CPL 3077 A 1 
HETATM 39 C C45 CPL . . . C 2 66.799 2.989 55.227 1 7.53 ? C45 CPL 3077 A 1 
HETATM 40 C C46 CPL . . . C 2 68.211 3.515 55.145 1 7.32 ? C46 CPL 3077 A 1 
HETATM 41 C C47 CPL . . . C 2 69.231 2.718 55.915 1 6.93 ? C47 CPL 3077 A 1 
HETATM 42 C C48 CPL . . . C 2 70.607 3.335 55.823 1 6.63 ? C48 CPL 3077 A 1 
HETATM 43 N N CPL . . . C 2 43.441 3.132 56.172 1 6.6 ? N CPL 3077 A 1 
HETATM 44 O O2 CPL . . . C 2 51.656 4.482 54.611 1 7.48 ? O2 CPL 3077 A 1 
HETATM 45 O O3 CPL . . . C 2 51.206 6.329 56.714 1 3.45 ? O3 CPL 3077 A 1 
HETATM 46 O O11 CPL . . . C 2 52.667 5.915 58.315 1 1.64 ? O11 CPL 3077 A 1 
HETATM 47 O O31 CPL . . . C 2 50.817 2.715 53.505 1 8.6 ? O31 CPL 3077 A 1 
HETATM 48 O O1P CPL . . . C 2 48.344 4.088 58.574 1 2.56 1 O1P CPL 3077 A 1 
HETATM 49 O O2P CPL . . . C 2 48.491 1.966 57.232 1 5.98 ? O2P CPL 3077 A 1 
HETATM 50 O O3P CPL . . . C 2 49.528 4.003 56.426 1 5.61 ? O3P CPL 3077 A 1 
HETATM 51 O O4P CPL . . . C 2 47.062 3.818 56.513 1 5.65 ? O4P CPL 3077 A 1 
HETATM 52 P P CPL . . . C 2 48.377 3.41 57.292 1 4.85 ? P CPL 3077 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          23 
_model_server_stats.element_count           52 
#