data_2W6U # _model_server_result.job_id RK_GGHQO9YC30XhBtBXfiw _model_server_result.datetime_utc '2024-11-13 14:35:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w6u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1817}' # _entry.id 2W6U # _exptl.entry_id 2W6U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 350.491 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15-PENTAOXATRICOSAN-1-OL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 130.36 _cell.angle_gamma 90 _cell.entry_id 2W6U _cell.length_a 194.774 _cell.length_b 129.928 _cell.length_c 141.565 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W6U _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K 1 1 B,C,L,M,N,O,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 P C15 PVE . C PVE 1 1_555 C N DSN 1 C DSN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.277 ? covale ? covale2 C C DSN 1 C DSN 3 1_555 C N ALA 2 C ALA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 C C ALA 2 C ALA 4 1_555 C N AHO 3 C AHO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale4 C C AHO 3 C AHO 5 1_555 C N ORN 4 C ORN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale5 C C ORN 4 C ORN 6 1_555 C N DAS 5 C DAS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 C NE ORN 4 C ORN 6 1_555 C C SER 7 C SER 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.291 ? covale ? covale7 C C DAS 5 C DAS 7 1_555 C N AHO 6 C AHO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale8 C C AHO 6 C AHO 8 1_555 C N SER 7 C SER 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? metalc ? metalc1 P O26 PVE . C PVE 1 1_555 Q FE FE . C FE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc2 P O25 PVE . C PVE 1 1_555 Q FE FE . C FE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc3 Q FE FE . C FE 2 1_555 C C6 AHO 3 C AHO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc4 Q FE FE . C FE 2 1_555 C O3 AHO 3 C AHO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc5 Q FE FE . C FE 2 1_555 C O2 AHO 3 C AHO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc6 Q FE FE . C FE 2 1_555 C N2 AHO 3 C AHO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc7 Q FE FE . C FE 2 1_555 C O3 AHO 6 C AHO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc8 Q FE FE . C FE 2 1_555 C O2 AHO 6 C AHO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? # _chem_comp.formula 'C18 H38 O6' _chem_comp.formula_weight 350.491 _chem_comp.id N8E _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15-PENTAOXATRICOSAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'N-OCTYLPENTAOXYETHYLENE;PENTAETHYLENE GLYCOL MONOOCTYL ETHER;OCTYLPENTAGLYCOL N-OCTYLPENTAOXYETHYLENE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 N8E sing 276 n n C01 H011 N8E sing 277 n n C01 H012 N8E sing 278 n n C01 H013 N8E sing 279 n n C02 C03 N8E sing 280 n n C02 H021 N8E sing 281 n n C02 H022 N8E sing 282 n n C03 C04 N8E sing 283 n n C03 H031 N8E sing 284 n n C03 H032 N8E sing 285 n n C04 C05 N8E sing 286 n n C04 H041 N8E sing 287 n n C04 H042 N8E sing 288 n n C05 C06 N8E sing 289 n n C05 H051 N8E sing 290 n n C05 H052 N8E sing 291 n n C06 C07 N8E sing 292 n n C06 H061 N8E sing 293 n n C06 H062 N8E sing 294 n n C07 C08 N8E sing 295 n n C07 H071 N8E sing 296 n n C07 H072 N8E sing 297 n n C08 O09 N8E sing 298 n n C08 H081 N8E sing 299 n n C08 H082 N8E sing 300 n n O09 C10 N8E sing 301 n n C10 C11 N8E sing 302 n n C10 H101 N8E sing 303 n n C10 H102 N8E sing 304 n n C11 O12 N8E sing 305 n n C11 H111 N8E sing 306 n n C11 H112 N8E sing 307 n n O12 C13 N8E sing 308 n n C13 C14 N8E sing 309 n n C13 H131 N8E sing 310 n n C13 H132 N8E sing 311 n n C14 O15 N8E sing 312 n n C14 H141 N8E sing 313 n n C14 H142 N8E sing 314 n n O15 C16 N8E sing 315 n n C16 C17 N8E sing 316 n n C16 H161 N8E sing 317 n n C16 H162 N8E sing 318 n n C17 O18 N8E sing 319 n n C17 H171 N8E sing 320 n n C17 H172 N8E sing 321 n n O18 C19 N8E sing 322 n n C19 C20 N8E sing 323 n n C19 H191 N8E sing 324 n n C19 H192 N8E sing 325 n n C20 O21 N8E sing 326 n n C20 H201 N8E sing 327 n n C20 H202 N8E sing 328 n n O21 C22 N8E sing 329 n n C22 C23 N8E sing 330 n n C22 H221 N8E sing 331 n n C22 H222 N8E sing 332 n n C23 O24 N8E sing 333 n n C23 H231 N8E sing 334 n n C23 H232 N8E sing 335 n n O24 H24 N8E sing 336 n n # _atom_sites.entry_id 2W6U _atom_sites.fract_transf_matrix[1][1] 0.005134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004363 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00927 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 N8E A 1 1816 1816 N8E N8E . E 3 N8E A 1 1817 1817 N8E N8E . F 4 PO4 A 1 1818 1818 PO4 PO4 . G 4 PO4 A 1 1819 1819 PO4 PO4 . H 4 PO4 A 1 1820 1820 PO4 PO4 . I 4 PO4 A 1 1821 1821 PO4 PO4 . J 4 PO4 A 1 1822 1822 PO4 PO4 . K 4 PO4 A 1 1823 1823 PO4 PO4 . L 4 PO4 B 1 1818 1818 PO4 PO4 . M 4 PO4 B 1 1819 1819 PO4 PO4 . N 4 PO4 B 1 1820 1820 PO4 PO4 . O 4 PO4 B 1 1821 1821 PO4 PO4 . P 5 PVE C 1 1 1 PVE PVE . Q 6 FE C 1 2 2 FE FE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 N8E . A . E 3 -29.837 8.869 24.225 0.5 2.31 ? C01 N8E 1817 A 1 HETATM 2 C C01 N8E . B . E 3 -45.448 -18.02 37.829 0.5 2 ? C01 N8E 1817 A 1 HETATM 3 C C02 N8E . A . E 3 -30.677 7.628 23.939 0.5 2.29 ? C02 N8E 1817 A 1 HETATM 4 C C02 N8E . B . E 3 -44.159 -17.227 38.009 0.5 2 ? C02 N8E 1817 A 1 HETATM 5 C C03 N8E . A . E 3 -30.658 6.537 25.03 0.5 2.58 ? C03 N8E 1817 A 1 HETATM 6 C C03 N8E . B . E 3 -43.852 -16.266 36.865 0.5 2 ? C03 N8E 1817 A 1 HETATM 7 C C04 N8E . A . E 3 -31.977 5.726 25.165 0.5 2.68 ? C04 N8E 1817 A 1 HETATM 8 C C04 N8E . B . E 3 -42.619 -15.39 37.13 0.5 2 ? C04 N8E 1817 A 1 HETATM 9 C C05 N8E . A . E 3 -32.463 5.416 26.591 0.5 2.28 ? C05 N8E 1817 A 1 HETATM 10 C C05 N8E . B . E 3 -42.857 -13.884 36.953 0.5 2.08 ? C05 N8E 1817 A 1 HETATM 11 C C06 N8E . A . E 3 -33.231 4.088 26.728 0.5 3.2 ? C06 N8E 1817 A 1 HETATM 12 C C06 N8E . B . E 3 -41.659 -13.071 36.448 0.5 2.69 ? C06 N8E 1817 A 1 HETATM 13 C C07 N8E . A . E 3 -33.46 3.614 28.182 0.5 5.22 ? C07 N8E 1817 A 1 HETATM 14 C C07 N8E . B . E 3 -41.994 -11.656 35.946 0.5 3.92 ? C07 N8E 1817 A 1 HETATM 15 C C08 N8E . A . E 3 -34.709 2.743 28.409 0.5 8.67 ? C08 N8E 1817 A 1 HETATM 16 C C08 N8E . B . E 3 -40.762 -10.723 35.877 0.5 6.4 ? C08 N8E 1817 A 1 HETATM 17 O O09 N8E . A . E 3 -34.629 1.399 27.855 0.5 11.76 ? O09 N8E 1817 A 1 HETATM 18 O O09 N8E . B . E 3 -40.629 -10.007 34.627 0.5 8.15 ? O09 N8E 1817 A 1 HETATM 19 C C10 N8E . A . E 3 -35.363 0.376 28.58 0.5 12.02 ? C10 N8E 1817 A 1 HETATM 20 C C10 N8E . B . E 3 -39.612 -8.994 34.51 0.5 7.52 ? C10 N8E 1817 A 1 HETATM 21 C C11 N8E . A . E 3 -35.063 -1.049 28.07 0.5 13.34 ? C11 N8E 1817 A 1 HETATM 22 C C11 N8E . B . E 3 -39.025 -8.975 33.096 0.5 8.06 ? C11 N8E 1817 A 1 HETATM 23 O O12 N8E . A . E 3 -36.21 -1.95 28.153 0.5 15.42 ? O12 N8E 1817 A 1 HETATM 24 O O12 N8E . B . E 3 -37.766 -8.262 33.047 0.5 11.13 ? O12 N8E 1817 A 1 HETATM 25 C C13 N8E . A . E 3 -36.44 -2.823 27.02 0.5 12.06 ? C13 N8E 1817 A 1 HETATM 26 C C13 N8E . B . E 3 -36.617 -9.036 32.635 0.5 8.09 ? C13 N8E 1817 A 1 HETATM 27 C C14 N8E . A . E 3 -36.694 -4.267 27.46 0.5 10.16 ? C14 N8E 1817 A 1 HETATM 28 C C14 N8E . B . E 3 -35.398 -8.177 32.305 0.5 5.55 ? C14 N8E 1817 A 1 HETATM 29 O O15 N8E . A . E 3 -36.326 -5.22 26.442 0.5 9.29 ? O15 N8E 1817 A 1 HETATM 30 O O15 N8E . B . E 3 -34.531 -8.81 31.349 0.5 4.89 ? O15 N8E 1817 A 1 HETATM 31 C C16 N8E . A . E 3 -36.007 -6.485 27.06 0.5 8.47 ? C16 N8E 1817 A 1 HETATM 32 C C16 N8E . B . E 3 -34.551 -8.128 30.086 0.5 6.04 ? C16 N8E 1817 A 1 HETATM 33 C C17 N8E . A . E 3 -34.755 -7.174 26.515 0.5 8.53 ? C17 N8E 1817 A 1 HETATM 34 C C17 N8E . B . E 3 -33.589 -8.758 29.086 0.5 8.41 ? C17 N8E 1817 A 1 HETATM 35 O O18 N8E . A . E 3 -34.912 -8.598 26.364 0.5 10.05 ? O18 N8E 1817 A 1 HETATM 36 O O18 N8E . B . E 3 -34.04 -8.678 27.702 0.5 11.16 ? O18 N8E 1817 A 1 HETATM 37 C C19 N8E . A . E 3 -33.76 -9.325 25.837 0.5 10.99 ? C19 N8E 1817 A 1 HETATM 38 C C19 N8E . B . E 3 -33.281 -9.576 26.824 0.5 11.71 ? C19 N8E 1817 A 1 HETATM 39 C C20 N8E . A . E 3 -34.044 -10.319 24.673 0.5 11.9 ? C20 N8E 1817 A 1 HETATM 40 C C20 N8E . B . E 3 -32.626 -8.975 25.552 0.5 12.44 ? C20 N8E 1817 A 1 HETATM 41 O O21 N8E . A . E 3 -33.341 -11.595 24.745 0.5 10.98 ? O21 N8E 1817 A 1 HETATM 42 O O21 N8E . B . E 3 -31.355 -9.58 25.197 0.5 14.66 ? O21 N8E 1817 A 1 HETATM 43 C C22 N8E . A . E 3 -33.679 -12.518 23.69 0.5 9.37 ? C22 N8E 1817 A 1 HETATM 44 C C22 N8E . B . E 3 -31.139 -10.008 23.81 0.5 14.45 ? C22 N8E 1817 A 1 HETATM 45 C C23 N8E . A . E 3 -33.468 -13.991 24.069 0.5 9.24 ? C23 N8E 1817 A 1 HETATM 46 C C23 N8E . B . E 3 -29.839 -9.446 23.175 0.5 12.67 ? C23 N8E 1817 A 1 HETATM 47 O O24 N8E . A . E 3 -33.364 -14.855 22.914 0.5 8.58 ? O24 N8E 1817 A 1 HETATM 48 O O24 N8E . B . E 3 -29.122 -10.309 22.265 0.5 8.99 ? O24 N8E 1817 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #