data_2W76
#
_model_server_result.job_id            suikGWjvimYTVO10xSV4Mg 
_model_server_result.datetime_utc      '2024-11-15 19:35:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2w76 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1816}' 
#
_entry.id    2W76 
#
_exptl.entry_id    2W76 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              350.491 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3,6,9,12,15-PENTAOXATRICOSAN-1-OL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          130.77 
_cell.angle_gamma         90 
_cell.entry_id            2W76 
_cell.length_a            193.422 
_cell.length_b            129.932 
_cell.length_c            140.877 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2W76 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,K 1 1 
B,C,L,M,N,O,P,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 P C15 PVE . C PVE 1 1_555 C N DSN 1 C DSN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.277 ? 
covale ? covale2 C CB DSN 1 C DSN 3 1_555 C N DAB 2 C DAB 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? 
covale ? covale3 C CB DSN 1 C DSN 3 1_555 C ND DAB 2 C DAB 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.269 ? 
covale ? covale4 C C DAB 2 C DAB 4 1_555 C N FHO 3 C FHO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? 
covale ? covale5 C C FHO 3 C FHO 5 1_555 C N GLN 4 C GLN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
covale ? covale6 C C GLN 4 C GLN 6 1_555 C N DGN 5 C DGN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale7 C C DGN 5 C DGN 7 1_555 C N FHO 6 C FHO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale8 C C FHO 6 C FHO 8 1_555 C N GLY 7 C GLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
metalc ? metalc1 P O25 PVE . C PVE 1 1_555 Q FE FE . C FE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc2 P O26 PVE . C PVE 1 1_555 Q FE FE . C FE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc3 Q FE FE . C FE 2 1_555 C OH FHO 3 C FHO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc4 Q FE FE . C FE 2 1_555 C OZ FHO 3 C FHO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc5 Q FE FE . C FE 2 1_555 C NE FHO 3 C FHO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? 
metalc ? metalc6 Q FE FE . C FE 2 1_555 C OZ FHO 6 C FHO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc7 Q FE FE . C FE 2 1_555 C OH FHO 6 C FHO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc8 Q FE FE . C FE 2 1_555 C NE FHO 6 C FHO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? 
#
_chem_comp.formula           'C18 H38 O6' 
_chem_comp.formula_weight    350.491 
_chem_comp.id                N8E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3,6,9,12,15-PENTAOXATRICOSAN-1-OL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'N-OCTYLPENTAOXYETHYLENE;PENTAETHYLENE GLYCOL MONOOCTYL ETHER;OCTYLPENTAGLYCOL N-OCTYLPENTAOXYETHYLENE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 N8E sing 317 n n 
C01 H011 N8E sing 318 n n 
C01 H012 N8E sing 319 n n 
C01 H013 N8E sing 320 n n 
C02 C03 N8E sing 321 n n 
C02 H021 N8E sing 322 n n 
C02 H022 N8E sing 323 n n 
C03 C04 N8E sing 324 n n 
C03 H031 N8E sing 325 n n 
C03 H032 N8E sing 326 n n 
C04 C05 N8E sing 327 n n 
C04 H041 N8E sing 328 n n 
C04 H042 N8E sing 329 n n 
C05 C06 N8E sing 330 n n 
C05 H051 N8E sing 331 n n 
C05 H052 N8E sing 332 n n 
C06 C07 N8E sing 333 n n 
C06 H061 N8E sing 334 n n 
C06 H062 N8E sing 335 n n 
C07 C08 N8E sing 336 n n 
C07 H071 N8E sing 337 n n 
C07 H072 N8E sing 338 n n 
C08 O09 N8E sing 339 n n 
C08 H081 N8E sing 340 n n 
C08 H082 N8E sing 341 n n 
O09 C10 N8E sing 342 n n 
C10 C11 N8E sing 343 n n 
C10 H101 N8E sing 344 n n 
C10 H102 N8E sing 345 n n 
C11 O12 N8E sing 346 n n 
C11 H111 N8E sing 347 n n 
C11 H112 N8E sing 348 n n 
O12 C13 N8E sing 349 n n 
C13 C14 N8E sing 350 n n 
C13 H131 N8E sing 351 n n 
C13 H132 N8E sing 352 n n 
C14 O15 N8E sing 353 n n 
C14 H141 N8E sing 354 n n 
C14 H142 N8E sing 355 n n 
O15 C16 N8E sing 356 n n 
C16 C17 N8E sing 357 n n 
C16 H161 N8E sing 358 n n 
C16 H162 N8E sing 359 n n 
C17 O18 N8E sing 360 n n 
C17 H171 N8E sing 361 n n 
C17 H172 N8E sing 362 n n 
O18 C19 N8E sing 363 n n 
C19 C20 N8E sing 364 n n 
C19 H191 N8E sing 365 n n 
C19 H192 N8E sing 366 n n 
C20 O21 N8E sing 367 n n 
C20 H201 N8E sing 368 n n 
C20 H202 N8E sing 369 n n 
O21 C22 N8E sing 370 n n 
C22 C23 N8E sing 371 n n 
C22 H221 N8E sing 372 n n 
C22 H222 N8E sing 373 n n 
C23 O24 N8E sing 374 n n 
C23 H231 N8E sing 375 n n 
C23 H232 N8E sing 376 n n 
O24 H24 N8E sing 377 n n 
#
_atom_sites.entry_id                     2W76 
_atom_sites.fract_transf_matrix[1][1]    0.00517 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004458 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007696 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009373 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 N8E A 1 1816 1816 N8E N8E . 
E 3 N8E A 1 1817 1817 N8E N8E . 
F 4 PO4 A 1 1818 1818 PO4 PO4 . 
G 4 PO4 A 1 1819 1819 PO4 PO4 . 
H 4 PO4 A 1 1820 1820 PO4 PO4 . 
I 4 PO4 A 1 1821 1821 PO4 PO4 . 
J 4 PO4 A 1 1822 1822 PO4 PO4 . 
K 4 PO4 A 1 1823 1823 PO4 PO4 . 
L 4 PO4 B 1 1816 1816 PO4 PO4 . 
M 4 PO4 B 1 1817 1817 PO4 PO4 . 
N 4 PO4 B 1 1818 1818 PO4 PO4 . 
O 4 PO4 B 1 1819 1819 PO4 PO4 . 
P 5 PVE C 1 1 1 PVE PVE . 
Q 6 FE C 1 2 2 FE FE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 N8E . . . D 3 2.492 -24.31 22.065 1 57.69 ? C01 N8E 1816 A 1 
HETATM 2 C C02 N8E . . . D 3 1.212 -23.495 22.07 1 58.74 ? C02 N8E 1816 A 1 
HETATM 3 C C03 N8E . . . D 3 0.295 -23.884 23.245 1 58.87 ? C03 N8E 1816 A 1 
HETATM 4 C C04 N8E . . . D 3 -1.187 -23.851 22.842 1 57.92 ? C04 N8E 1816 A 1 
HETATM 5 C C05 N8E . . . D 3 -2.188 -24.185 23.954 1 56.09 ? C05 N8E 1816 A 1 
HETATM 6 C C06 N8E . . . D 3 -3.623 -24.063 23.424 1 56.05 ? C06 N8E 1816 A 1 
HETATM 7 C C07 N8E . . . D 3 -4.596 -25.078 24.059 1 56.82 ? C07 N8E 1816 A 1 
HETATM 8 C C08 N8E . . . D 3 -5.953 -25.211 23.318 1 55.2 ? C08 N8E 1816 A 1 
HETATM 9 O O09 N8E . . . D 3 -6.729 -26.318 23.819 1 51.53 ? O09 N8E 1816 A 1 
HETATM 10 C C10 N8E . . . D 3 -8.151 -26.151 23.816 1 48.81 ? C10 N8E 1816 A 1 
HETATM 11 C C11 N8E . . . D 3 -8.751 -26.957 24.976 1 48.4 ? C11 N8E 1816 A 1 
HETATM 12 O O12 N8E . . . D 3 -10.149 -26.713 25.165 1 47.9 ? O12 N8E 1816 A 1 
HETATM 13 C C13 N8E . . . D 3 -10.821 -27.837 25.706 1 47.5 ? C13 N8E 1816 A 1 
HETATM 14 C C14 N8E . . . D 3 -12.299 -27.519 25.671 1 50.13 ? C14 N8E 1816 A 1 
HETATM 15 O O15 N8E . . . D 3 -12.954 -28.369 26.613 1 54.83 ? O15 N8E 1816 A 1 
HETATM 16 C C16 N8E . . . D 3 -14.169 -28.935 26.111 1 57.82 ? C16 N8E 1816 A 1 
HETATM 17 C C17 N8E . . . D 3 -14.346 -30.371 26.595 1 61.04 ? C17 N8E 1816 A 1 
HETATM 18 O O18 N8E . . . D 3 -15.353 -31.052 25.847 1 63.94 ? O18 N8E 1816 A 1 
HETATM 19 C C19 N8E . . . D 3 -14.835 -32.202 25.182 1 67.47 ? C19 N8E 1816 A 1 
HETATM 20 C C20 N8E . . . D 3 -15.992 -32.913 24.489 1 71.49 ? C20 N8E 1816 A 1 
HETATM 21 O O21 N8E . . . D 3 -16.964 -33.351 25.445 1 73.66 ? O21 N8E 1816 A 1 
HETATM 22 C C22 N8E . . . D 3 -17.503 -34.64 25.112 1 75.24 ? C22 N8E 1816 A 1 
HETATM 23 C C23 N8E . . . D 3 -18.767 -34.911 25.934 1 76.55 ? C23 N8E 1816 A 1 
HETATM 24 O O24 N8E . . . D 3 -18.876 -33.956 27.01 1 75.67 ? O24 N8E 1816 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           24 
#