data_2W76 # _model_server_result.job_id XqJKHoBVMyhVkuZ-kBl9lA _model_server_result.datetime_utc '2024-11-15 19:46:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w76 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1817}' # _entry.id 2W76 # _exptl.entry_id 2W76 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 350.491 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15-PENTAOXATRICOSAN-1-OL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 130.77 _cell.angle_gamma 90 _cell.entry_id 2W76 _cell.length_a 193.422 _cell.length_b 129.932 _cell.length_c 140.877 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W76 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K 1 1 B,C,L,M,N,O,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 P C15 PVE . C PVE 1 1_555 C N DSN 1 C DSN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.277 ? covale ? covale2 C CB DSN 1 C DSN 3 1_555 C N DAB 2 C DAB 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale3 C CB DSN 1 C DSN 3 1_555 C ND DAB 2 C DAB 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.269 ? covale ? covale4 C C DAB 2 C DAB 4 1_555 C N FHO 3 C FHO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? covale ? covale5 C C FHO 3 C FHO 5 1_555 C N GLN 4 C GLN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale6 C C GLN 4 C GLN 6 1_555 C N DGN 5 C DGN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 C C DGN 5 C DGN 7 1_555 C N FHO 6 C FHO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale8 C C FHO 6 C FHO 8 1_555 C N GLY 7 C GLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? metalc ? metalc1 P O25 PVE . C PVE 1 1_555 Q FE FE . C FE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc2 P O26 PVE . C PVE 1 1_555 Q FE FE . C FE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc3 Q FE FE . C FE 2 1_555 C OH FHO 3 C FHO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc4 Q FE FE . C FE 2 1_555 C OZ FHO 3 C FHO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc5 Q FE FE . C FE 2 1_555 C NE FHO 3 C FHO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc6 Q FE FE . C FE 2 1_555 C OZ FHO 6 C FHO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc7 Q FE FE . C FE 2 1_555 C OH FHO 6 C FHO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc8 Q FE FE . C FE 2 1_555 C NE FHO 6 C FHO 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? # _chem_comp.formula 'C18 H38 O6' _chem_comp.formula_weight 350.491 _chem_comp.id N8E _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15-PENTAOXATRICOSAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'N-OCTYLPENTAOXYETHYLENE;PENTAETHYLENE GLYCOL MONOOCTYL ETHER;OCTYLPENTAGLYCOL N-OCTYLPENTAOXYETHYLENE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 N8E sing 317 n n C01 H011 N8E sing 318 n n C01 H012 N8E sing 319 n n C01 H013 N8E sing 320 n n C02 C03 N8E sing 321 n n C02 H021 N8E sing 322 n n C02 H022 N8E sing 323 n n C03 C04 N8E sing 324 n n C03 H031 N8E sing 325 n n C03 H032 N8E sing 326 n n C04 C05 N8E sing 327 n n C04 H041 N8E sing 328 n n C04 H042 N8E sing 329 n n C05 C06 N8E sing 330 n n C05 H051 N8E sing 331 n n C05 H052 N8E sing 332 n n C06 C07 N8E sing 333 n n C06 H061 N8E sing 334 n n C06 H062 N8E sing 335 n n C07 C08 N8E sing 336 n n C07 H071 N8E sing 337 n n C07 H072 N8E sing 338 n n C08 O09 N8E sing 339 n n C08 H081 N8E sing 340 n n C08 H082 N8E sing 341 n n O09 C10 N8E sing 342 n n C10 C11 N8E sing 343 n n C10 H101 N8E sing 344 n n C10 H102 N8E sing 345 n n C11 O12 N8E sing 346 n n C11 H111 N8E sing 347 n n C11 H112 N8E sing 348 n n O12 C13 N8E sing 349 n n C13 C14 N8E sing 350 n n C13 H131 N8E sing 351 n n C13 H132 N8E sing 352 n n C14 O15 N8E sing 353 n n C14 H141 N8E sing 354 n n C14 H142 N8E sing 355 n n O15 C16 N8E sing 356 n n C16 C17 N8E sing 357 n n C16 H161 N8E sing 358 n n C16 H162 N8E sing 359 n n C17 O18 N8E sing 360 n n C17 H171 N8E sing 361 n n C17 H172 N8E sing 362 n n O18 C19 N8E sing 363 n n C19 C20 N8E sing 364 n n C19 H191 N8E sing 365 n n C19 H192 N8E sing 366 n n C20 O21 N8E sing 367 n n C20 H201 N8E sing 368 n n C20 H202 N8E sing 369 n n O21 C22 N8E sing 370 n n C22 C23 N8E sing 371 n n C22 H221 N8E sing 372 n n C22 H222 N8E sing 373 n n C23 O24 N8E sing 374 n n C23 H231 N8E sing 375 n n C23 H232 N8E sing 376 n n O24 H24 N8E sing 377 n n # _atom_sites.entry_id 2W76 _atom_sites.fract_transf_matrix[1][1] 0.00517 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004458 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007696 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009373 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 N8E A 1 1816 1816 N8E N8E . E 3 N8E A 1 1817 1817 N8E N8E . F 4 PO4 A 1 1818 1818 PO4 PO4 . G 4 PO4 A 1 1819 1819 PO4 PO4 . H 4 PO4 A 1 1820 1820 PO4 PO4 . I 4 PO4 A 1 1821 1821 PO4 PO4 . J 4 PO4 A 1 1822 1822 PO4 PO4 . K 4 PO4 A 1 1823 1823 PO4 PO4 . L 4 PO4 B 1 1816 1816 PO4 PO4 . M 4 PO4 B 1 1817 1817 PO4 PO4 . N 4 PO4 B 1 1818 1818 PO4 PO4 . O 4 PO4 B 1 1819 1819 PO4 PO4 . P 5 PVE C 1 1 1 PVE PVE . Q 6 FE C 1 2 2 FE FE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 N8E . A . E 3 -30.512 8.696 23.83 0.5 2 ? C01 N8E 1817 A 1 HETATM 2 C C01 N8E . B . E 3 -45.735 -17.937 37.254 0.5 2 ? C01 N8E 1817 A 1 HETATM 3 C C02 N8E . A . E 3 -30.868 7.222 23.672 0.5 4 ? C02 N8E 1817 A 1 HETATM 4 C C02 N8E . B . E 3 -44.426 -17.187 37.451 0.5 2 ? C02 N8E 1817 A 1 HETATM 5 C C03 N8E . A . E 3 -31.195 6.455 24.963 0.5 5.69 ? C03 N8E 1817 A 1 HETATM 6 C C03 N8E . B . E 3 -44.144 -16.097 36.422 0.5 2 ? C03 N8E 1817 A 1 HETATM 7 C C04 N8E . A . E 3 -32.564 5.741 25.004 0.5 7.79 ? C04 N8E 1817 A 1 HETATM 8 C C04 N8E . B . E 3 -43.07 -15.126 36.917 0.5 2 ? C04 N8E 1817 A 1 HETATM 9 C C05 N8E . A . E 3 -32.974 5.261 26.42 0.5 10.27 ? C05 N8E 1817 A 1 HETATM 10 C C05 N8E . B . E 3 -42.715 -14.065 35.871 0.5 2 ? C05 N8E 1817 A 1 HETATM 11 C C06 N8E . A . E 3 -33.905 4.02 26.49 0.5 10.97 ? C06 N8E 1817 A 1 HETATM 12 C C06 N8E . B . E 3 -42.18 -12.776 36.498 0.5 3.99 ? C06 N8E 1817 A 1 HETATM 13 C C07 N8E . A . E 3 -34.183 3.489 27.906 0.5 13.1 ? C07 N8E 1817 A 1 HETATM 14 C C07 N8E . B . E 3 -42.479 -11.496 35.707 0.5 5.15 ? C07 N8E 1817 A 1 HETATM 15 C C08 N8E . A . E 3 -35.332 2.456 27.948 0.5 16.33 ? C08 N8E 1817 A 1 HETATM 16 C C08 N8E . B . E 3 -41.433 -10.38 35.893 0.5 6.12 ? C08 N8E 1817 A 1 HETATM 17 O O09 N8E . A . E 3 -35.001 1.082 28.317 0.5 17.23 ? O09 N8E 1817 A 1 HETATM 18 O O09 N8E . B . E 3 -40.611 -10.29 34.708 0.5 10.48 ? O09 N8E 1817 A 1 HETATM 19 C C10 N8E . A . E 3 -36.004 0.178 27.817 0.5 16.45 ? C10 N8E 1817 A 1 HETATM 20 C C10 N8E . B . E 3 -40.346 -8.942 34.232 0.5 12.19 ? C10 N8E 1817 A 1 HETATM 21 C C11 N8E . A . E 3 -35.512 -1.262 27.618 0.5 16.1 ? C11 N8E 1817 A 1 HETATM 22 C C11 N8E . B . E 3 -39.703 -8.887 32.829 0.5 10.91 ? C11 N8E 1817 A 1 HETATM 23 O O12 N8E . A . E 3 -36.619 -2.197 27.568 0.5 15.52 ? O12 N8E 1817 A 1 HETATM 24 O O12 N8E . B . E 3 -38.495 -8.093 32.808 0.5 11.76 ? O12 N8E 1817 A 1 HETATM 25 C C13 N8E . A . E 3 -36.723 -2.95 26.354 0.5 10.63 ? C13 N8E 1817 A 1 HETATM 26 C C13 N8E . B . E 3 -37.466 -8.657 31.939 0.5 10.06 ? C13 N8E 1817 A 1 HETATM 27 C C14 N8E . A . E 3 -37.078 -4.371 26.738 0.5 6.86 ? C14 N8E 1817 A 1 HETATM 28 C C14 N8E . B . E 3 -36.106 -7.923 32 0.5 7.11 ? C14 N8E 1817 A 1 HETATM 29 O O15 N8E . A . E 3 -36.527 -5.287 25.803 0.5 5.71 ? O15 N8E 1817 A 1 HETATM 30 O O15 N8E . B . E 3 -35.102 -8.433 31.103 0.5 4.03 ? O15 N8E 1817 A 1 HETATM 31 C C16 N8E . A . E 3 -36.321 -6.558 26.435 0.5 5.25 ? C16 N8E 1817 A 1 HETATM 32 C C16 N8E . B . E 3 -34.861 -7.63 29.927 0.5 3.96 ? C16 N8E 1817 A 1 HETATM 33 C C17 N8E . A . E 3 -34.939 -7.167 26.239 0.5 5.96 ? C17 N8E 1817 A 1 HETATM 34 C C17 N8E . B . E 3 -33.819 -8.277 29.007 0.5 5.09 ? C17 N8E 1817 A 1 HETATM 35 O O18 N8E . A . E 3 -35.059 -8.508 25.738 0.5 8.5 ? O18 N8E 1817 A 1 HETATM 36 O O18 N8E . B . E 3 -34.082 -8.165 27.588 0.5 8.17 ? O18 N8E 1817 A 1 HETATM 37 C C19 N8E . A . E 3 -33.859 -9.15 25.232 0.5 7.48 ? C19 N8E 1817 A 1 HETATM 38 C C19 N8E . B . E 3 -33.223 -9.086 26.828 0.5 11.72 ? C19 N8E 1817 A 1 HETATM 39 C C20 N8E . A . E 3 -34.132 -10.151 24.091 0.5 6.92 ? C20 N8E 1817 A 1 HETATM 40 C C20 N8E . B . E 3 -32.768 -8.849 25.348 0.5 11.82 ? C20 N8E 1817 A 1 HETATM 41 O O21 N8E . A . E 3 -33.655 -11.49 24.345 0.5 6.19 ? O21 N8E 1817 A 1 HETATM 42 O O21 N8E . B . E 3 -31.44 -9.398 25.056 0.5 13.43 ? O21 N8E 1817 A 1 HETATM 43 C C22 N8E . A . E 3 -33.641 -12.329 23.156 0.5 4.26 ? C22 N8E 1817 A 1 HETATM 44 C C22 N8E . B . E 3 -31.148 -10.082 23.798 0.5 12.68 ? C22 N8E 1817 A 1 HETATM 45 C C23 N8E . A . E 3 -33.871 -13.846 23.342 0.5 2 ? C23 N8E 1817 A 1 HETATM 46 C C23 N8E . B . E 3 -30.343 -9.227 22.788 0.5 12.11 ? C23 N8E 1817 A 1 HETATM 47 O O24 N8E . A . E 3 -33.21 -14.648 22.332 0.5 2 ? O24 N8E 1817 A 1 HETATM 48 O O24 N8E . B . E 3 -29.315 -9.889 22.013 0.5 9.39 ? O24 N8E 1817 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #