data_2W77
#
_model_server_result.job_id            ytnRKN3sQ10oz_kNeWmmDw 
_model_server_result.datetime_utc      '2024-11-22 00:00:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2w77 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":1}' 
#
_entry.id    2W77 
#
_exptl.entry_id    2W77 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              376.341 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1S)-1-CARBOXY-5-[(3-CARBOXYPROPANOYL)AMINO]-8,9-DIHYDROXY-1,2,3,4-TETRAHYDROPYRIMIDO[1,2-A]QUINOLIN-11-IUM 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          130.92 
_cell.angle_gamma         90 
_cell.entry_id            2W77 
_cell.length_a            194.768 
_cell.length_b            130.02 
_cell.length_c            141.329 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2W77 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,K 1 1 
B,C,L,M,N,O,P,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             P 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 P C15 PVE . C PVE 1 1_555 C N DSN 1 C DSN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.278 ? 
covale ? covale2 C C DSN 1 C DSN 3 1_555 C N LYS 2 C LYS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale3 C C GLY 3 C GLY 5 1_555 C N FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale4 C C FHO 4 C FHO 6 1_555 C N SER 5 C SER 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale5 C C SER 5 C SER 7 1_555 C N DSN 6 C DSN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale6 C C DSN 6 C DSN 8 1_555 C N GLY 7 C GLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale7 C C LYS 8 C LYS 10 1_555 C N FH7 9 C FH7 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale8 C C FH7 9 C FH7 11 1_555 C N SER 10 C SER 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
metalc ? metalc1 P O25 PVE . C PVE 1 1_555 Q FE FE . C FE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc2 P O26 PVE . C PVE 1 1_555 Q FE FE . C FE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc3 Q FE FE . C FE 2 1_555 C NE FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? 
metalc ? metalc4 Q FE FE . C FE 2 1_555 C OZ FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc5 Q FE FE . C FE 2 1_555 C CZ FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? 
metalc ? metalc6 Q FE FE . C FE 2 1_555 C OH FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc7 Q FE FE . C FE 2 1_555 C NE FH7 9 C FH7 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? 
metalc ? metalc8 Q FE FE . C FE 2 1_555 C OZ FH7 9 C FH7 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc9 Q FE FE . C FE 2 1_555 C CZ FH7 9 C FH7 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? 
metalc ? metalc10 Q FE FE . C FE 2 1_555 C OH FH7 9 C FH7 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
#
_chem_comp.formula           'C17 H18 N3 O7 1' 
_chem_comp.formula_weight    376.341 
_chem_comp.id                PVE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1S)-1-CARBOXY-5-[(3-CARBOXYPROPANOYL)AMINO]-8,9-DIHYDROXY-1,2,3,4-TETRAHYDROPYRIMIDO[1,2-A]QUINOLIN-11-IUM 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O23 C22 PVE doub 386 n n 
C22 O24 PVE sing 387 n n 
C22 C21 PVE sing 388 n n 
C21 C20 PVE sing 389 n n 
C20 C18 PVE sing 390 n n 
C18 O19 PVE doub 391 n n 
C18 N17 PVE sing 392 n n 
N17 C3 PVE sing 393 n n 
C3 C4 PVE doub 394 n y 
C3 C2 PVE sing 395 n y 
C4 C10 PVE sing 396 n y 
C10 C5 PVE sing 397 n y 
C10 C9 PVE doub 398 n y 
C5 C6 PVE doub 399 n y 
C6 O25 PVE sing 400 n n 
C6 C7 PVE sing 401 n y 
C7 O26 PVE sing 402 n n 
C7 C8 PVE doub 403 n y 
C8 C9 PVE sing 404 n y 
C9 N1 PVE sing 405 n y 
N1 C14 PVE sing 406 n n 
N1 C2 PVE doub 407 n y 
C14 C15 PVE sing 408 n n 
C14 C13 PVE sing 409 n n 
C15 O16 PVE doub 410 n n 
C15 OXT PVE sing 411 n n 
C2 N11 PVE sing 412 n n 
N11 C12 PVE sing 413 n n 
C12 C13 PVE sing 414 n n 
O24 H24 PVE sing 415 n n 
C21 H211 PVE sing 416 n n 
C21 H212 PVE sing 417 n n 
C20 H201 PVE sing 418 n n 
C20 H202 PVE sing 419 n n 
N17 H17 PVE sing 420 n n 
C4 H4 PVE sing 421 n n 
C5 H5 PVE sing 422 n n 
O25 H25 PVE sing 423 n n 
O26 H26 PVE sing 424 n n 
C8 H8 PVE sing 425 n n 
C14 H14 PVE sing 426 n n 
C13 H131 PVE sing 427 n n 
C13 H132 PVE sing 428 n n 
OXT HOT PVE sing 429 n n 
N11 H11 PVE sing 430 n n 
C12 H121 PVE sing 431 n n 
C12 H122 PVE sing 432 n n 
#
_atom_sites.entry_id                     2W77 
_atom_sites.fract_transf_matrix[1][1]    0.005134 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004451 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007691 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009364 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 N8E A 1 1816 1816 N8E N8E . 
E 3 N8E A 1 1817 1817 N8E N8E . 
F 4 PO4 A 1 1818 1818 PO4 PO4 . 
G 4 PO4 A 1 1819 1819 PO4 PO4 . 
H 4 PO4 A 1 1820 1820 PO4 PO4 . 
I 4 PO4 A 1 1821 1821 PO4 PO4 . 
J 4 PO4 A 1 1822 1822 PO4 PO4 . 
K 4 PO4 A 1 1823 1823 PO4 PO4 . 
L 4 PO4 B 1 1816 1816 PO4 PO4 . 
M 4 PO4 B 1 1817 1817 PO4 PO4 . 
N 4 PO4 B 1 1818 1818 PO4 PO4 . 
O 4 PO4 B 1 1819 1819 PO4 PO4 . 
P 5 PVE C 1 1 1 PVE PVE . 
Q 6 FE C 1 2 2 FE FE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O23 PVE . . . P 5 -68.231 -28.88 22.707 0 59.54 ? O23 PVE 1 C 1 
HETATM 2 C C22 PVE . . . P 5 -68.496 -27.709 22.329 0 60.02 ? C22 PVE 1 C 1 
HETATM 3 O O24 PVE . . . P 5 -68.885 -26.787 23.1 0 62.05 ? O24 PVE 1 C 1 
HETATM 4 C C21 PVE . . . P 5 -68.328 -27.389 20.864 0 56.82 ? C21 PVE 1 C 1 
HETATM 5 C C20 PVE . . . P 5 -69.444 -28.008 20.016 0 54.59 ? C20 PVE 1 C 1 
HETATM 6 C C18 PVE . . . P 5 -68.97 -29.243 19.644 1 40.06 ? C18 PVE 1 C 1 
HETATM 7 O O19 PVE . . . P 5 -69.125 -29.735 18.522 1 38.36 ? O19 PVE 1 C 1 
HETATM 8 N N17 PVE . . . P 5 -68.545 -29.883 20.742 1 40.72 ? N17 PVE 1 C 1 
HETATM 9 C C3 PVE . . . P 5 -68.208 -31.274 20.807 1 41.12 ? C3 PVE 1 C 1 
HETATM 10 C C4 PVE . . . P 5 -66.88 -31.748 20.642 1 40.95 ? C4 PVE 1 C 1 
HETATM 11 C C10 PVE . . . P 5 -66.561 -33.122 20.733 1 40.67 ? C10 PVE 1 C 1 
HETATM 12 C C5 PVE . . . P 5 -65.233 -33.581 20.579 1 41.03 ? C5 PVE 1 C 1 
HETATM 13 C C6 PVE . . . P 5 -64.933 -34.958 20.675 1 41.06 ? C6 PVE 1 C 1 
HETATM 14 O O25 PVE . . . P 5 -63.669 -35.481 20.543 1 40.5 ? O25 PVE 1 C 1 
HETATM 15 C C7 PVE . . . P 5 -65.952 -35.871 20.929 1 40.87 ? C7 PVE 1 C 1 
HETATM 16 O O26 PVE . . . P 5 -65.566 -37.187 21.025 1 40.6 ? O26 PVE 1 C 1 
HETATM 17 C C8 PVE . . . P 5 -67.278 -35.424 21.088 1 40.24 ? C8 PVE 1 C 1 
HETATM 18 C C9 PVE . . . P 5 -67.598 -34.044 20.999 1 40.94 ? C9 PVE 1 C 1 
HETATM 19 N N1 PVE . . . P 5 -68.88 -33.567 21.178 1 41.45 ? N1 PVE 1 C 1 
HETATM 20 C C14 PVE . . . P 5 -69.979 -34.516 21.447 1 41.11 ? C14 PVE 1 C 1 
HETATM 21 C C15 PVE . . . P 5 -70.546 -34.964 20.11 1 40.44 ? C15 PVE 1 C 1 
HETATM 22 O O16 PVE . . . P 5 -70.204 -34.322 19.126 1 39.66 ? O16 PVE 1 C 1 
HETATM 23 C C2 PVE . . . P 5 -69.196 -32.229 21.085 1 40.97 ? C2 PVE 1 C 1 
HETATM 24 N N11 PVE . . . P 5 -70.478 -31.774 21.242 1 40.42 ? N11 PVE 1 C 1 
HETATM 25 C C12 PVE . . . P 5 -71.609 -32.594 21.669 1 39.59 ? C12 PVE 1 C 1 
HETATM 26 C C13 PVE . . . P 5 -71.026 -33.835 22.328 1 40.17 ? C13 PVE 1 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#