data_2W77 # _model_server_result.job_id lfb1K-jZDBdRfMxrhqP-uw _model_server_result.datetime_utc '2024-11-13 14:34:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w77 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1816}' # _entry.id 2W77 # _exptl.entry_id 2W77 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 350.491 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15-PENTAOXATRICOSAN-1-OL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 130.92 _cell.angle_gamma 90 _cell.entry_id 2W77 _cell.length_a 194.768 _cell.length_b 130.02 _cell.length_c 141.329 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W77 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K 1 1 B,C,L,M,N,O,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 P C15 PVE . C PVE 1 1_555 C N DSN 1 C DSN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.278 ? covale ? covale2 C C DSN 1 C DSN 3 1_555 C N LYS 2 C LYS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 C C GLY 3 C GLY 5 1_555 C N FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale4 C C FHO 4 C FHO 6 1_555 C N SER 5 C SER 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale5 C C SER 5 C SER 7 1_555 C N DSN 6 C DSN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale6 C C DSN 6 C DSN 8 1_555 C N GLY 7 C GLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale7 C C LYS 8 C LYS 10 1_555 C N FH7 9 C FH7 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 C C FH7 9 C FH7 11 1_555 C N SER 10 C SER 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 P O25 PVE . C PVE 1 1_555 Q FE FE . C FE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc2 P O26 PVE . C PVE 1 1_555 Q FE FE . C FE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc3 Q FE FE . C FE 2 1_555 C NE FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc4 Q FE FE . C FE 2 1_555 C OZ FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc5 Q FE FE . C FE 2 1_555 C CZ FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc6 Q FE FE . C FE 2 1_555 C OH FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc7 Q FE FE . C FE 2 1_555 C NE FH7 9 C FH7 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc8 Q FE FE . C FE 2 1_555 C OZ FH7 9 C FH7 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc9 Q FE FE . C FE 2 1_555 C CZ FH7 9 C FH7 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc10 Q FE FE . C FE 2 1_555 C OH FH7 9 C FH7 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? # _chem_comp.formula 'C18 H38 O6' _chem_comp.formula_weight 350.491 _chem_comp.id N8E _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15-PENTAOXATRICOSAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'N-OCTYLPENTAOXYETHYLENE;PENTAETHYLENE GLYCOL MONOOCTYL ETHER;OCTYLPENTAGLYCOL N-OCTYLPENTAOXYETHYLENE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 N8E sing 281 n n C01 H011 N8E sing 282 n n C01 H012 N8E sing 283 n n C01 H013 N8E sing 284 n n C02 C03 N8E sing 285 n n C02 H021 N8E sing 286 n n C02 H022 N8E sing 287 n n C03 C04 N8E sing 288 n n C03 H031 N8E sing 289 n n C03 H032 N8E sing 290 n n C04 C05 N8E sing 291 n n C04 H041 N8E sing 292 n n C04 H042 N8E sing 293 n n C05 C06 N8E sing 294 n n C05 H051 N8E sing 295 n n C05 H052 N8E sing 296 n n C06 C07 N8E sing 297 n n C06 H061 N8E sing 298 n n C06 H062 N8E sing 299 n n C07 C08 N8E sing 300 n n C07 H071 N8E sing 301 n n C07 H072 N8E sing 302 n n C08 O09 N8E sing 303 n n C08 H081 N8E sing 304 n n C08 H082 N8E sing 305 n n O09 C10 N8E sing 306 n n C10 C11 N8E sing 307 n n C10 H101 N8E sing 308 n n C10 H102 N8E sing 309 n n C11 O12 N8E sing 310 n n C11 H111 N8E sing 311 n n C11 H112 N8E sing 312 n n O12 C13 N8E sing 313 n n C13 C14 N8E sing 314 n n C13 H131 N8E sing 315 n n C13 H132 N8E sing 316 n n C14 O15 N8E sing 317 n n C14 H141 N8E sing 318 n n C14 H142 N8E sing 319 n n O15 C16 N8E sing 320 n n C16 C17 N8E sing 321 n n C16 H161 N8E sing 322 n n C16 H162 N8E sing 323 n n C17 O18 N8E sing 324 n n C17 H171 N8E sing 325 n n C17 H172 N8E sing 326 n n O18 C19 N8E sing 327 n n C19 C20 N8E sing 328 n n C19 H191 N8E sing 329 n n C19 H192 N8E sing 330 n n C20 O21 N8E sing 331 n n C20 H201 N8E sing 332 n n C20 H202 N8E sing 333 n n O21 C22 N8E sing 334 n n C22 C23 N8E sing 335 n n C22 H221 N8E sing 336 n n C22 H222 N8E sing 337 n n C23 O24 N8E sing 338 n n C23 H231 N8E sing 339 n n C23 H232 N8E sing 340 n n O24 H24 N8E sing 341 n n # _atom_sites.entry_id 2W77 _atom_sites.fract_transf_matrix[1][1] 0.005134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004451 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009364 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 N8E A 1 1816 1816 N8E N8E . E 3 N8E A 1 1817 1817 N8E N8E . F 4 PO4 A 1 1818 1818 PO4 PO4 . G 4 PO4 A 1 1819 1819 PO4 PO4 . H 4 PO4 A 1 1820 1820 PO4 PO4 . I 4 PO4 A 1 1821 1821 PO4 PO4 . J 4 PO4 A 1 1822 1822 PO4 PO4 . K 4 PO4 A 1 1823 1823 PO4 PO4 . L 4 PO4 B 1 1816 1816 PO4 PO4 . M 4 PO4 B 1 1817 1817 PO4 PO4 . N 4 PO4 B 1 1818 1818 PO4 PO4 . O 4 PO4 B 1 1819 1819 PO4 PO4 . P 5 PVE C 1 1 1 PVE PVE . Q 6 FE C 1 2 2 FE FE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 N8E . . . D 3 2.907 -23.976 21.953 1 57.04 ? C01 N8E 1816 A 1 HETATM 2 C C02 N8E . . . D 3 1.548 -23.37 22.271 1 56.34 ? C02 N8E 1816 A 1 HETATM 3 C C03 N8E . . . D 3 0.642 -24.298 23.094 1 54.92 ? C03 N8E 1816 A 1 HETATM 4 C C04 N8E . . . D 3 -0.838 -24.078 22.741 1 53.11 ? C04 N8E 1816 A 1 HETATM 5 C C05 N8E . . . D 3 -1.816 -24.467 23.861 1 50.45 ? C05 N8E 1816 A 1 HETATM 6 C C06 N8E . . . D 3 -3.263 -24.142 23.467 1 48.23 ? C06 N8E 1816 A 1 HETATM 7 C C07 N8E . . . D 3 -4.309 -25.047 24.136 1 47.52 ? C07 N8E 1816 A 1 HETATM 8 C C08 N8E . . . D 3 -5.631 -25.186 23.336 1 46.7 ? C08 N8E 1816 A 1 HETATM 9 O O09 N8E . . . D 3 -6.395 -26.351 23.72 1 43.49 ? O09 N8E 1816 A 1 HETATM 10 C C10 N8E . . . D 3 -7.81 -26.237 23.524 1 40.9 ? C10 N8E 1816 A 1 HETATM 11 C C11 N8E . . . D 3 -8.484 -26.983 24.678 1 39.89 ? C11 N8E 1816 A 1 HETATM 12 O O12 N8E . . . D 3 -9.916 -26.852 24.709 1 38.87 ? O12 N8E 1816 A 1 HETATM 13 C C13 N8E . . . D 3 -10.512 -27.697 25.693 1 36.87 ? C13 N8E 1816 A 1 HETATM 14 C C14 N8E . . . D 3 -12.009 -27.507 25.61 1 37 ? C14 N8E 1816 A 1 HETATM 15 O O15 N8E . . . D 3 -12.617 -28.464 26.461 1 40.06 ? O15 N8E 1816 A 1 HETATM 16 C C16 N8E . . . D 3 -13.826 -29.002 25.92 1 44.4 ? C16 N8E 1816 A 1 HETATM 17 C C17 N8E . . . D 3 -14.4 -30.076 26.847 1 48.91 ? C17 N8E 1816 A 1 HETATM 18 O O18 N8E . . . D 3 -15.359 -30.934 26.214 1 52.61 ? O18 N8E 1816 A 1 HETATM 19 C C19 N8E . . . D 3 -14.76 -32.123 25.702 1 57.64 ? C19 N8E 1816 A 1 HETATM 20 C C20 N8E . . . D 3 -15.774 -32.815 24.803 1 61.9 ? C20 N8E 1816 A 1 HETATM 21 O O21 N8E . . . D 3 -16.788 -33.406 25.624 1 65.97 ? O21 N8E 1816 A 1 HETATM 22 C C22 N8E . . . D 3 -16.674 -34.843 25.668 1 68.64 ? C22 N8E 1816 A 1 HETATM 23 C C23 N8E . . . D 3 -18.064 -35.469 25.571 1 69.23 ? C23 N8E 1816 A 1 HETATM 24 O O24 N8E . . . D 3 -18.9 -34.705 26.45 1 70.41 ? O24 N8E 1816 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #