data_2W78
#
_model_server_result.job_id            9dG3Dj7CEIcBqz-u_tDZMA 
_model_server_result.datetime_utc      '2024-11-22 04:17:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2w78 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1816}' 
#
_entry.id    2W78 
#
_exptl.entry_id    2W78 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              350.491 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3,6,9,12,15-PENTAOXATRICOSAN-1-OL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          130.43 
_cell.angle_gamma         90 
_cell.entry_id            2W78 
_cell.length_a            191.556 
_cell.length_b            130.937 
_cell.length_c            139.367 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2W78 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,K 1 1 
B,C,L,M,N,O,P,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 P C15 PVE . C PVE 1 1_555 C N SER 1 C SER 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.261 ? 
covale ? covale2 C C GLY 3 C GLY 5 1_555 C N FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 C C FHO 4 C FHO 6 1_555 C N LYS 5 C LYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 C C LYS 5 C LYS 7 1_555 C N FH7 6 C FH7 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale5 C C FH7 6 C FH7 8 1_555 C N SER 7 C SER 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
metalc ? metalc1 P O25 PVE . C PVE 1 1_555 Q FE FE . C FE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc2 P O26 PVE . C PVE 1 1_555 Q FE FE . C FE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc3 Q FE FE . C FE 2 1_555 C NE FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? 
metalc ? metalc4 Q FE FE . C FE 2 1_555 C OZ FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc5 Q FE FE . C FE 2 1_555 C CZ FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? 
metalc ? metalc6 Q FE FE . C FE 2 1_555 C OH FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc7 Q FE FE . C FE 2 1_555 C NE FH7 6 C FH7 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? 
metalc ? metalc8 Q FE FE . C FE 2 1_555 C OZ FH7 6 C FH7 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc9 Q FE FE . C FE 2 1_555 C CZ FH7 6 C FH7 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc10 Q FE FE . C FE 2 1_555 C OH FH7 6 C FH7 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
#
_chem_comp.formula           'C18 H38 O6' 
_chem_comp.formula_weight    350.491 
_chem_comp.id                N8E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3,6,9,12,15-PENTAOXATRICOSAN-1-OL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'N-OCTYLPENTAOXYETHYLENE;PENTAETHYLENE GLYCOL MONOOCTYL ETHER;OCTYLPENTAGLYCOL N-OCTYLPENTAOXYETHYLENE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 N8E sing 268 n n 
C01 H011 N8E sing 269 n n 
C01 H012 N8E sing 270 n n 
C01 H013 N8E sing 271 n n 
C02 C03 N8E sing 272 n n 
C02 H021 N8E sing 273 n n 
C02 H022 N8E sing 274 n n 
C03 C04 N8E sing 275 n n 
C03 H031 N8E sing 276 n n 
C03 H032 N8E sing 277 n n 
C04 C05 N8E sing 278 n n 
C04 H041 N8E sing 279 n n 
C04 H042 N8E sing 280 n n 
C05 C06 N8E sing 281 n n 
C05 H051 N8E sing 282 n n 
C05 H052 N8E sing 283 n n 
C06 C07 N8E sing 284 n n 
C06 H061 N8E sing 285 n n 
C06 H062 N8E sing 286 n n 
C07 C08 N8E sing 287 n n 
C07 H071 N8E sing 288 n n 
C07 H072 N8E sing 289 n n 
C08 O09 N8E sing 290 n n 
C08 H081 N8E sing 291 n n 
C08 H082 N8E sing 292 n n 
O09 C10 N8E sing 293 n n 
C10 C11 N8E sing 294 n n 
C10 H101 N8E sing 295 n n 
C10 H102 N8E sing 296 n n 
C11 O12 N8E sing 297 n n 
C11 H111 N8E sing 298 n n 
C11 H112 N8E sing 299 n n 
O12 C13 N8E sing 300 n n 
C13 C14 N8E sing 301 n n 
C13 H131 N8E sing 302 n n 
C13 H132 N8E sing 303 n n 
C14 O15 N8E sing 304 n n 
C14 H141 N8E sing 305 n n 
C14 H142 N8E sing 306 n n 
O15 C16 N8E sing 307 n n 
C16 C17 N8E sing 308 n n 
C16 H161 N8E sing 309 n n 
C16 H162 N8E sing 310 n n 
C17 O18 N8E sing 311 n n 
C17 H171 N8E sing 312 n n 
C17 H172 N8E sing 313 n n 
O18 C19 N8E sing 314 n n 
C19 C20 N8E sing 315 n n 
C19 H191 N8E sing 316 n n 
C19 H192 N8E sing 317 n n 
C20 O21 N8E sing 318 n n 
C20 H201 N8E sing 319 n n 
C20 H202 N8E sing 320 n n 
O21 C22 N8E sing 321 n n 
C22 C23 N8E sing 322 n n 
C22 H221 N8E sing 323 n n 
C22 H222 N8E sing 324 n n 
C23 O24 N8E sing 325 n n 
C23 H231 N8E sing 326 n n 
C23 H232 N8E sing 327 n n 
O24 H24 N8E sing 328 n n 
#
_atom_sites.entry_id                     2W78 
_atom_sites.fract_transf_matrix[1][1]    0.00522 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004448 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007637 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009426 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 N8E A 1 1816 1816 N8E N8E . 
E 3 N8E A 1 1817 1817 N8E N8E . 
F 4 PO4 A 1 1818 1818 PO4 PO4 . 
G 4 PO4 A 1 1819 1819 PO4 PO4 . 
H 4 PO4 A 1 1820 1820 PO4 PO4 . 
I 4 PO4 A 1 1821 1821 PO4 PO4 . 
J 4 PO4 A 1 1822 1822 PO4 PO4 . 
K 4 PO4 A 1 1823 1823 PO4 PO4 . 
L 4 PO4 B 1 1816 1816 PO4 PO4 . 
M 4 PO4 B 1 1817 1817 PO4 PO4 . 
N 4 PO4 B 1 1818 1818 PO4 PO4 . 
O 4 PO4 B 1 1819 1819 PO4 PO4 . 
P 5 PVE C 1 1 1 PVE PVE . 
Q 6 FE C 1 2 2 FE FE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 N8E . . . D 3 2.743 -23.782 21.629 1 77.16 ? C01 N8E 1816 A 1 
HETATM 2 C C02 N8E . . . D 3 1.237 -23.658 21.453 1 76.43 ? C02 N8E 1816 A 1 
HETATM 3 C C03 N8E . . . D 3 0.46 -24.063 22.715 1 76.13 ? C03 N8E 1816 A 1 
HETATM 4 C C04 N8E . . . D 3 -1.028 -24.302 22.4 1 75.34 ? C04 N8E 1816 A 1 
HETATM 5 C C05 N8E . . . D 3 -1.975 -24.188 23.606 1 72.63 ? C05 N8E 1816 A 1 
HETATM 6 C C06 N8E . . . D 3 -3.408 -23.884 23.163 1 71.31 ? C06 N8E 1816 A 1 
HETATM 7 C C07 N8E . . . D 3 -4.355 -25.04 23.518 1 72.54 ? C07 N8E 1816 A 1 
HETATM 8 C C08 N8E . . . D 3 -5.769 -25.023 22.872 1 71.37 ? C08 N8E 1816 A 1 
HETATM 9 O O09 N8E . . . D 3 -6.597 -26.096 23.387 1 68.85 ? O09 N8E 1816 A 1 
HETATM 10 C C10 N8E . . . D 3 -7.822 -26.348 22.69 1 66.47 ? C10 N8E 1816 A 1 
HETATM 11 C C11 N8E . . . D 3 -8.58 -27.425 23.474 1 65.76 ? C11 N8E 1816 A 1 
HETATM 12 O O12 N8E . . . D 3 -9.604 -26.892 24.342 1 63.92 ? O12 N8E 1816 A 1 
HETATM 13 C C13 N8E . . . D 3 -10.255 -27.853 25.181 1 60.71 ? C13 N8E 1816 A 1 
HETATM 14 C C14 N8E . . . D 3 -11.742 -27.561 25.236 1 60.05 ? C14 N8E 1816 A 1 
HETATM 15 O O15 N8E . . . D 3 -12.338 -28.469 26.151 1 61.42 ? O15 N8E 1816 A 1 
HETATM 16 C C16 N8E . . . D 3 -13.548 -29.062 25.666 1 64.73 ? C16 N8E 1816 A 1 
HETATM 17 C C17 N8E . . . D 3 -13.411 -30.572 25.432 1 68.09 ? C17 N8E 1816 A 1 
HETATM 18 O O18 N8E . . . D 3 -14.649 -31.237 25.736 1 72.73 ? O18 N8E 1816 A 1 
HETATM 19 C C19 N8E . . . D 3 -14.69 -32.593 25.269 1 76.18 ? C19 N8E 1816 A 1 
HETATM 20 C C20 N8E . . . D 3 -15.935 -32.845 24.421 1 79.23 ? C20 N8E 1816 A 1 
HETATM 21 O O21 N8E . . . D 3 -17.027 -33.275 25.238 1 82.48 ? O21 N8E 1816 A 1 
HETATM 22 C C22 N8E . . . D 3 -17.711 -34.414 24.683 1 85 ? C22 N8E 1816 A 1 
HETATM 23 C C23 N8E . . . D 3 -17.97 -35.491 25.752 1 85.8 ? C23 N8E 1816 A 1 
HETATM 24 O O24 N8E . . . D 3 -17.768 -34.966 27.08 1 83.53 ? O24 N8E 1816 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           408 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           24 
#