data_2W78 # _model_server_result.job_id l1T6hMLZvr4CwcDlWQAgiQ _model_server_result.datetime_utc '2024-11-22 04:29:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1817}' # _entry.id 2W78 # _exptl.entry_id 2W78 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 350.491 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15-PENTAOXATRICOSAN-1-OL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 130.43 _cell.angle_gamma 90 _cell.entry_id 2W78 _cell.length_a 191.556 _cell.length_b 130.937 _cell.length_c 139.367 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K 1 1 B,C,L,M,N,O,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 P C15 PVE . C PVE 1 1_555 C N SER 1 C SER 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.261 ? covale ? covale2 C C GLY 3 C GLY 5 1_555 C N FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 C C FHO 4 C FHO 6 1_555 C N LYS 5 C LYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 C C LYS 5 C LYS 7 1_555 C N FH7 6 C FH7 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 C C FH7 6 C FH7 8 1_555 C N SER 7 C SER 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 P O25 PVE . C PVE 1 1_555 Q FE FE . C FE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc2 P O26 PVE . C PVE 1 1_555 Q FE FE . C FE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc3 Q FE FE . C FE 2 1_555 C NE FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc4 Q FE FE . C FE 2 1_555 C OZ FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc5 Q FE FE . C FE 2 1_555 C CZ FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc6 Q FE FE . C FE 2 1_555 C OH FHO 4 C FHO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc7 Q FE FE . C FE 2 1_555 C NE FH7 6 C FH7 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc8 Q FE FE . C FE 2 1_555 C OZ FH7 6 C FH7 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc9 Q FE FE . C FE 2 1_555 C CZ FH7 6 C FH7 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc10 Q FE FE . C FE 2 1_555 C OH FH7 6 C FH7 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? # _chem_comp.formula 'C18 H38 O6' _chem_comp.formula_weight 350.491 _chem_comp.id N8E _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15-PENTAOXATRICOSAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'N-OCTYLPENTAOXYETHYLENE;PENTAETHYLENE GLYCOL MONOOCTYL ETHER;OCTYLPENTAGLYCOL N-OCTYLPENTAOXYETHYLENE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 N8E sing 268 n n C01 H011 N8E sing 269 n n C01 H012 N8E sing 270 n n C01 H013 N8E sing 271 n n C02 C03 N8E sing 272 n n C02 H021 N8E sing 273 n n C02 H022 N8E sing 274 n n C03 C04 N8E sing 275 n n C03 H031 N8E sing 276 n n C03 H032 N8E sing 277 n n C04 C05 N8E sing 278 n n C04 H041 N8E sing 279 n n C04 H042 N8E sing 280 n n C05 C06 N8E sing 281 n n C05 H051 N8E sing 282 n n C05 H052 N8E sing 283 n n C06 C07 N8E sing 284 n n C06 H061 N8E sing 285 n n C06 H062 N8E sing 286 n n C07 C08 N8E sing 287 n n C07 H071 N8E sing 288 n n C07 H072 N8E sing 289 n n C08 O09 N8E sing 290 n n C08 H081 N8E sing 291 n n C08 H082 N8E sing 292 n n O09 C10 N8E sing 293 n n C10 C11 N8E sing 294 n n C10 H101 N8E sing 295 n n C10 H102 N8E sing 296 n n C11 O12 N8E sing 297 n n C11 H111 N8E sing 298 n n C11 H112 N8E sing 299 n n O12 C13 N8E sing 300 n n C13 C14 N8E sing 301 n n C13 H131 N8E sing 302 n n C13 H132 N8E sing 303 n n C14 O15 N8E sing 304 n n C14 H141 N8E sing 305 n n C14 H142 N8E sing 306 n n O15 C16 N8E sing 307 n n C16 C17 N8E sing 308 n n C16 H161 N8E sing 309 n n C16 H162 N8E sing 310 n n C17 O18 N8E sing 311 n n C17 H171 N8E sing 312 n n C17 H172 N8E sing 313 n n O18 C19 N8E sing 314 n n C19 C20 N8E sing 315 n n C19 H191 N8E sing 316 n n C19 H192 N8E sing 317 n n C20 O21 N8E sing 318 n n C20 H201 N8E sing 319 n n C20 H202 N8E sing 320 n n O21 C22 N8E sing 321 n n C22 C23 N8E sing 322 n n C22 H221 N8E sing 323 n n C22 H222 N8E sing 324 n n C23 O24 N8E sing 325 n n C23 H231 N8E sing 326 n n C23 H232 N8E sing 327 n n O24 H24 N8E sing 328 n n # _atom_sites.entry_id 2W78 _atom_sites.fract_transf_matrix[1][1] 0.00522 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004448 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007637 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009426 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 N8E A 1 1816 1816 N8E N8E . E 3 N8E A 1 1817 1817 N8E N8E . F 4 PO4 A 1 1818 1818 PO4 PO4 . G 4 PO4 A 1 1819 1819 PO4 PO4 . H 4 PO4 A 1 1820 1820 PO4 PO4 . I 4 PO4 A 1 1821 1821 PO4 PO4 . J 4 PO4 A 1 1822 1822 PO4 PO4 . K 4 PO4 A 1 1823 1823 PO4 PO4 . L 4 PO4 B 1 1816 1816 PO4 PO4 . M 4 PO4 B 1 1817 1817 PO4 PO4 . N 4 PO4 B 1 1818 1818 PO4 PO4 . O 4 PO4 B 1 1819 1819 PO4 PO4 . P 5 PVE C 1 1 1 PVE PVE . Q 6 FE C 1 2 2 FE FE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 N8E . A . E 3 -30.231 8.534 23.994 0.5 8.53 ? C01 N8E 1817 A 1 HETATM 2 C C01 N8E . B . E 3 -44.299 -17.104 37.283 0.5 2 ? C01 N8E 1817 A 1 HETATM 3 C C02 N8E . A . E 3 -30.404 7.034 24.288 0.5 11.49 ? C02 N8E 1817 A 1 HETATM 4 C C02 N8E . B . E 3 -42.948 -16.469 37.029 0.5 3.9 ? C02 N8E 1817 A 1 HETATM 5 C C03 N8E . A . E 3 -31.613 6.704 25.183 0.5 12.75 ? C03 N8E 1817 A 1 HETATM 6 C C03 N8E . B . E 3 -43.001 -15.167 36.209 0.5 7.03 ? C03 N8E 1817 A 1 HETATM 7 C C04 N8E . A . E 3 -31.938 5.221 25.366 0.5 13.54 ? C04 N8E 1817 A 1 HETATM 8 C C04 N8E . B . E 3 -41.916 -14.122 36.544 0.5 11.8 ? C04 N8E 1817 A 1 HETATM 9 C C05 N8E . A . E 3 -32.952 5.014 26.508 0.5 17.11 ? C05 N8E 1817 A 1 HETATM 10 C C05 N8E . B . E 3 -42.247 -12.639 36.236 0.5 15.55 ? C05 N8E 1817 A 1 HETATM 11 C C06 N8E . A . E 3 -33.545 3.585 26.619 0.5 19.29 ? C06 N8E 1817 A 1 HETATM 12 C C06 N8E . B . E 3 -41.098 -11.855 35.554 0.5 19.2 ? C06 N8E 1817 A 1 HETATM 13 C C07 N8E . A . E 3 -34.452 3.355 27.854 0.5 21.95 ? C07 N8E 1817 A 1 HETATM 14 C C07 N8E . B . E 3 -41.46 -10.4 35.191 0.5 23.44 ? C07 N8E 1817 A 1 HETATM 15 C C08 N8E . A . E 3 -35.29 2.05 27.823 0.5 24 ? C08 N8E 1817 A 1 HETATM 16 C C08 N8E . B . E 3 -40.274 -9.425 34.974 0.5 27.31 ? C08 N8E 1817 A 1 HETATM 17 O O09 N8E . A . E 3 -34.558 0.898 28.331 0.5 26.52 ? O09 N8E 1817 A 1 HETATM 18 O O09 N8E . B . E 3 -39.651 -9.519 33.658 0.5 30.49 ? O09 N8E 1817 A 1 HETATM 19 C C10 N8E . A . E 3 -35.285 -0.33 28.568 0.5 24.71 ? C10 N8E 1817 A 1 HETATM 20 C C10 N8E . B . E 3 -39.104 -8.288 33.13 0.5 30 ? C10 N8E 1817 A 1 HETATM 21 C C11 N8E . A . E 3 -35.365 -1.229 27.313 0.5 22.22 ? C11 N8E 1817 A 1 HETATM 22 C C11 N8E . B . E 3 -38.046 -8.565 32.047 0.5 29.66 ? C11 N8E 1817 A 1 HETATM 23 O O12 N8E . A . E 3 -36.377 -2.258 27.407 0.5 19.2 ? O12 N8E 1817 A 1 HETATM 24 O O12 N8E . B . E 3 -36.704 -8.23 32.487 0.5 28.74 ? O12 N8E 1817 A 1 HETATM 25 C C13 N8E . A . E 3 -36.481 -2.999 26.192 0.5 17.41 ? C13 N8E 1817 A 1 HETATM 26 C C13 N8E . B . E 3 -35.65 -8.948 31.826 0.5 23.79 ? C13 N8E 1817 A 1 HETATM 27 C C14 N8E . A . E 3 -36.987 -4.409 26.449 0.5 16.13 ? C14 N8E 1817 A 1 HETATM 28 C C14 N8E . B . E 3 -34.574 -8.015 31.292 0.5 20.96 ? C14 N8E 1817 A 1 HETATM 29 O O15 N8E . A . E 3 -36.16 -5.378 25.791 0.5 15.2 ? O15 N8E 1817 A 1 HETATM 30 O O15 N8E . B . E 3 -33.992 -8.577 30.119 0.5 19.79 ? O15 N8E 1817 A 1 HETATM 31 C C16 N8E . A . E 3 -36.026 -6.516 26.657 0.5 14.29 ? C16 N8E 1817 A 1 HETATM 32 C C16 N8E . B . E 3 -34.448 -7.975 28.898 0.5 21.35 ? C16 N8E 1817 A 1 HETATM 33 C C17 N8E . A . E 3 -34.694 -7.244 26.571 0.5 14.1 ? C17 N8E 1817 A 1 HETATM 34 C C17 N8E . B . E 3 -33.308 -7.795 27.885 0.5 22.34 ? C17 N8E 1817 A 1 HETATM 35 O O18 N8E . A . E 3 -34.873 -8.425 25.765 0.5 17.88 ? O18 N8E 1817 A 1 HETATM 36 O O18 N8E . B . E 3 -33.276 -8.86 26.892 0.5 24.42 ? O18 N8E 1817 A 1 HETATM 37 C C19 N8E . A . E 3 -33.679 -9.173 25.373 0.5 18.28 ? C19 N8E 1817 A 1 HETATM 38 C C19 N8E . B . E 3 -32.052 -8.958 26.099 0.5 21.5 ? C19 N8E 1817 A 1 HETATM 39 C C20 N8E . A . E 3 -33.83 -10.11 24.149 0.5 18.68 ? C20 N8E 1817 A 1 HETATM 40 C C20 N8E . B . E 3 -32.184 -9.523 24.667 0.5 17.83 ? C20 N8E 1817 A 1 HETATM 41 O O21 N8E . A . E 3 -33.421 -11.475 24.408 0.5 20.74 ? O21 N8E 1817 A 1 HETATM 42 O O21 N8E . B . E 3 -30.922 -10.075 24.208 0.5 16.29 ? O21 N8E 1817 A 1 HETATM 43 C C22 N8E . A . E 3 -33.022 -12.299 23.277 0.5 19.66 ? C22 N8E 1817 A 1 HETATM 44 C C22 N8E . B . E 3 -30.676 -10.128 22.785 0.5 11.77 ? C22 N8E 1817 A 1 HETATM 45 C C23 N8E . A . E 3 -33.787 -13.639 23.206 0.5 19.5 ? C23 N8E 1817 A 1 HETATM 46 C C23 N8E . B . E 3 -29.376 -9.427 22.395 0.5 7.8 ? C23 N8E 1817 A 1 HETATM 47 O O24 N8E . A . E 3 -33.15 -14.636 22.368 0.5 19.09 ? O24 N8E 1817 A 1 HETATM 48 O O24 N8E . B . E 3 -28.86 -9.992 21.183 0.5 7.4 ? O24 N8E 1817 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #