data_2W88 # _model_server_result.job_id rbjN6KlcIFGkrYLjve1W7w _model_server_result.datetime_utc '2024-11-15 14:50:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":106}' # _entry.id 2W88 # _exptl.entry_id 2W88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2W88 _cell.length_a 127.7 _cell.length_b 127.7 _cell.length_c 94.99 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 151 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 1 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 -x+y,y,-z+1/3 -1 0 0 0 1 0 0 0 -1 0 0 31.663333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 G N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N MET 1 A MET 0 4_554 F ZN ZN . A ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc2 A OE2 GLU 2 A GLU 1 1_555 F ZN ZN . A ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc3 A ND1 HIS 25 A HIS 24 1_555 F ZN ZN . A ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc4 A OD2 ASP 28 A ASP 27 1_555 F ZN ZN . A ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc5 A ND1 HIS 40 A HIS 39 1_555 D CU CU . A CU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc6 A OD1 ASP 45 A ASP 44 1_555 H ZN ZN . B ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc7 A OD1 ASP 46 A ASP 45 1_555 H ZN ZN . B ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc8 A NE2 HIS 62 A HIS 61 1_555 E ZN ZN . A ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc9 A SG CYS 90 A CYS 89 1_555 D CU CU . A CU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc10 A ND1 HIS 93 A HIS 92 1_555 D CU CU . A CU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc11 A SD MET 98 A MET 97 1_555 D CU CU . A CU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc12 E ZN ZN . A ZN 107 1_555 B OD1 ASP 45 B ASP 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc13 E ZN ZN . A ZN 107 1_555 B OD1 ASP 46 B ASP 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc14 B O MET 1 B MET 0 1_555 M ZN ZN . C ZN 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc15 B N MET 1 B MET 0 4_555 M ZN ZN . C ZN 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc16 B N MET 1 B MET 0 1_555 M ZN ZN . C ZN 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc17 B O MET 1 B MET 0 4_555 M ZN ZN . C ZN 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc18 B OE2 GLU 2 B GLU 1 4_555 L ZN ZN . C ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc19 B ND1 HIS 25 B HIS 24 1_555 L ZN ZN . C ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc20 B OD2 ASP 28 B ASP 27 1_555 L ZN ZN . C ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc21 B ND1 HIS 40 B HIS 39 1_555 J CU CU . C CU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc22 B NE2 HIS 62 B HIS 61 1_555 K ZN ZN . C ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc23 B SG CYS 90 B CYS 89 1_555 J CU CU . C CU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc24 B ND1 HIS 93 B HIS 92 1_555 J CU CU . C CU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc25 B SD MET 98 B MET 97 1_555 J CU CU . C CU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc26 G CU CU . B CU 106 1_555 C ND1 HIS 40 C HIS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc27 G CU CU . B CU 106 1_555 C SG CYS 90 C CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc28 G CU CU . B CU 106 1_555 C ND1 HIS 93 C HIS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc29 G CU CU . B CU 106 1_555 C SD MET 98 C MET 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc30 H ZN ZN . B ZN 107 1_555 C NE2 HIS 62 C HIS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc31 I ZN ZN . B ZN 108 1_555 C N MET 1 C MET 0 6_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc32 I ZN ZN . B ZN 108 1_555 C OE2 GLU 2 C GLU 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc33 I ZN ZN . B ZN 108 1_555 C ND1 HIS 25 C HIS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc34 I ZN ZN . B ZN 108 1_555 C OD2 ASP 28 C ASP 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc35 C OD1 ASP 45 C ASP 44 1_555 K ZN ZN . C ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc36 C OD1 ASP 46 C ASP 45 1_555 K ZN ZN . C ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2W88 _atom_sites.fract_transf_matrix[1][1] 0.007831 _atom_sites.fract_transf_matrix[1][2] 0.004521 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CU A 1 106 106 CU CU . E 3 ZN A 1 107 107 ZN ZN . F 3 ZN A 1 108 108 ZN ZN . G 2 CU B 1 106 106 CU CU . H 3 ZN B 1 107 107 ZN ZN . I 3 ZN B 1 108 108 ZN ZN . J 2 CU C 1 106 106 CU CU . K 3 ZN C 1 107 107 ZN ZN . L 3 ZN C 1 108 108 ZN ZN . M 3 ZN C 1 109 109 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x -6.468 _atom_site.Cartn_y 43.44 _atom_site.Cartn_z 11.804 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 106 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #