data_2W8C # _model_server_result.job_id MAO35sQ5FCDOrVPu1i29dw _model_server_result.datetime_utc '2024-11-15 17:52:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":108}' # _entry.id 2W8C # _exptl.entry_id 2W8C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2W8C _cell.length_a 55.74 _cell.length_b 55.74 _cell.length_c 197.85 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 PISA hexameric 6 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1,2,3 B,F,G,H,J 2 1,4,5 A,C,D,E,I 3 1,3,2 B,F,G,H,J 3 6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 27.87 -48.272256 0 5 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 55.74 0 0 6 'crystal symmetry operation' 4_455 x-1/3,y+1/3,z+1/3 1 0 0 0 1 0 0 0 1 -27.87 16.090752 65.95 7 'crystal symmetry operation' 5_445 -y-1/3,x-y-2/3,z+1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 -32.181504 65.95 8 'crystal symmetry operation' 6_555 -x+y+2/3,-x+1/3,z+1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 27.87 16.090752 65.95 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 2 A GLU 1 1_555 E ZN ZN . A ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc2 A ND1 HIS 25 A HIS 24 1_555 E ZN ZN . A ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc3 A OD2 ASP 28 A ASP 27 1_555 E ZN ZN . A ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc4 A ND1 HIS 40 A HIS 39 1_555 C CU CU . A CU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc5 A OD1 ASP 45 A ASP 44 1_555 D ZN ZN . A ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc6 A OD1 ASP 46 A ASP 45 1_555 D ZN ZN . A ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc7 A NE2 HIS 62 A HIS 61 2_555 D ZN ZN . A ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc8 A OD2 ASP 80 A ASP 79 1_555 H ZN ZN . B ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc9 A SG CYS 90 A CYS 89 1_555 C CU CU . A CU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc10 A ND1 HIS 93 A HIS 92 1_555 C CU CU . A CU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc11 A SD MET 98 A MET 97 1_555 C CU CU . A CU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc12 D ZN ZN . A ZN 107 1_555 I O HOH . A HOH 2070 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc13 D ZN ZN . A ZN 107 1_555 I O HOH . A HOH 2071 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc14 B O MET 1 B MET 0 2_555 H ZN ZN . B ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc15 B N MET 1 B MET 0 2_555 H ZN ZN . B ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc16 B NE2 HIS 25 B HIS 24 1_555 H ZN ZN . B ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc17 B ND1 HIS 40 B HIS 39 1_555 F CU CU . B CU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc18 B OD1 ASP 45 B ASP 44 1_555 G ZN ZN . B ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc19 B OD1 ASP 46 B ASP 45 1_555 G ZN ZN . B ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc20 B NE2 HIS 62 B HIS 61 3_655 G ZN ZN . B ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc21 B SG CYS 90 B CYS 89 1_555 F CU CU . B CU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc22 B ND1 HIS 93 B HIS 92 1_555 F CU CU . B CU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc23 B SD MET 98 B MET 97 1_555 F CU CU . B CU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc24 G ZN ZN . B ZN 107 1_555 J O HOH . B HOH 2087 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc25 G ZN ZN . B ZN 107 1_555 J O HOH . B HOH 2088 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc26 H ZN ZN . B ZN 108 1_555 J O HOH . B HOH 2089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2W8C _atom_sites.fract_transf_matrix[1][1] 0.01794 _atom_sites.fract_transf_matrix[1][2] 0.010358 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CU A 1 106 106 CU CU . D 3 ZN A 1 107 107 ZN ZN . E 3 ZN A 1 108 108 ZN ZN . F 2 CU B 1 106 106 CU CU . G 3 ZN B 1 107 107 ZN ZN . H 3 ZN B 1 108 108 ZN ZN . I 4 HOH A 1 2001 2001 HOH HOH . I 4 HOH A 2 2002 2002 HOH HOH . I 4 HOH A 3 2003 2003 HOH HOH . I 4 HOH A 4 2004 2004 HOH HOH . I 4 HOH A 5 2005 2005 HOH HOH . I 4 HOH A 6 2006 2006 HOH HOH . I 4 HOH A 7 2007 2007 HOH HOH . I 4 HOH A 8 2008 2008 HOH HOH . I 4 HOH A 9 2009 2009 HOH HOH . I 4 HOH A 10 2010 2010 HOH HOH . I 4 HOH A 11 2011 2011 HOH HOH . I 4 HOH A 12 2012 2012 HOH HOH . I 4 HOH A 13 2013 2013 HOH HOH . I 4 HOH A 14 2014 2014 HOH HOH . I 4 HOH A 15 2015 2015 HOH HOH . I 4 HOH A 16 2016 2016 HOH HOH . I 4 HOH A 17 2017 2017 HOH HOH . I 4 HOH A 18 2018 2018 HOH HOH . I 4 HOH A 19 2019 2019 HOH HOH . I 4 HOH A 20 2020 2020 HOH HOH . I 4 HOH A 21 2021 2021 HOH HOH . I 4 HOH A 22 2022 2022 HOH HOH . I 4 HOH A 23 2023 2023 HOH HOH . I 4 HOH A 24 2024 2024 HOH HOH . I 4 HOH A 25 2025 2025 HOH HOH . I 4 HOH A 26 2026 2026 HOH HOH . I 4 HOH A 27 2027 2027 HOH HOH . I 4 HOH A 28 2028 2028 HOH HOH . I 4 HOH A 29 2029 2029 HOH HOH . I 4 HOH A 30 2030 2030 HOH HOH . I 4 HOH A 31 2031 2031 HOH HOH . I 4 HOH A 32 2032 2032 HOH HOH . I 4 HOH A 33 2033 2033 HOH HOH . I 4 HOH A 34 2034 2034 HOH HOH . I 4 HOH A 35 2035 2035 HOH HOH . I 4 HOH A 36 2036 2036 HOH HOH . I 4 HOH A 37 2037 2037 HOH HOH . I 4 HOH A 38 2038 2038 HOH HOH . I 4 HOH A 39 2039 2039 HOH HOH . I 4 HOH A 40 2040 2040 HOH HOH . I 4 HOH A 41 2041 2041 HOH HOH . I 4 HOH A 42 2042 2042 HOH HOH . I 4 HOH A 43 2043 2043 HOH HOH . I 4 HOH A 44 2044 2044 HOH HOH . I 4 HOH A 45 2045 2045 HOH HOH . I 4 HOH A 46 2046 2046 HOH HOH . I 4 HOH A 47 2047 2047 HOH HOH . I 4 HOH A 48 2048 2048 HOH HOH . I 4 HOH A 49 2049 2049 HOH HOH . I 4 HOH A 50 2050 2050 HOH HOH . I 4 HOH A 51 2051 2051 HOH HOH . I 4 HOH A 52 2052 2052 HOH HOH . I 4 HOH A 53 2053 2053 HOH HOH . I 4 HOH A 54 2054 2054 HOH HOH . I 4 HOH A 55 2055 2055 HOH HOH . I 4 HOH A 56 2056 2056 HOH HOH . I 4 HOH A 57 2057 2057 HOH HOH . I 4 HOH A 58 2058 2058 HOH HOH . I 4 HOH A 59 2059 2059 HOH HOH . I 4 HOH A 60 2060 2060 HOH HOH . I 4 HOH A 61 2061 2061 HOH HOH . I 4 HOH A 62 2062 2062 HOH HOH . I 4 HOH A 63 2063 2063 HOH HOH . I 4 HOH A 64 2064 2064 HOH HOH . I 4 HOH A 65 2065 2065 HOH HOH . I 4 HOH A 66 2066 2066 HOH HOH . I 4 HOH A 67 2067 2067 HOH HOH . I 4 HOH A 68 2068 2068 HOH HOH . I 4 HOH A 69 2069 2069 HOH HOH . I 4 HOH A 70 2070 2070 HOH HOH . I 4 HOH A 71 2071 2071 HOH HOH . J 4 HOH B 1 2001 2001 HOH HOH . J 4 HOH B 2 2002 2002 HOH HOH . J 4 HOH B 3 2003 2003 HOH HOH . J 4 HOH B 4 2004 2004 HOH HOH . J 4 HOH B 5 2005 2005 HOH HOH . J 4 HOH B 6 2006 2006 HOH HOH . J 4 HOH B 7 2007 2007 HOH HOH . J 4 HOH B 8 2008 2008 HOH HOH . J 4 HOH B 9 2009 2009 HOH HOH . J 4 HOH B 10 2010 2010 HOH HOH . J 4 HOH B 11 2011 2011 HOH HOH . J 4 HOH B 12 2012 2012 HOH HOH . J 4 HOH B 13 2013 2013 HOH HOH . J 4 HOH B 14 2014 2014 HOH HOH . J 4 HOH B 15 2015 2015 HOH HOH . J 4 HOH B 16 2016 2016 HOH HOH . J 4 HOH B 17 2017 2017 HOH HOH . J 4 HOH B 18 2018 2018 HOH HOH . J 4 HOH B 19 2019 2019 HOH HOH . J 4 HOH B 20 2020 2020 HOH HOH . J 4 HOH B 21 2021 2021 HOH HOH . J 4 HOH B 22 2022 2022 HOH HOH . J 4 HOH B 23 2023 2023 HOH HOH . J 4 HOH B 24 2024 2024 HOH HOH . J 4 HOH B 25 2025 2025 HOH HOH . J 4 HOH B 26 2026 2026 HOH HOH . J 4 HOH B 27 2027 2027 HOH HOH . J 4 HOH B 28 2028 2028 HOH HOH . J 4 HOH B 29 2029 2029 HOH HOH . J 4 HOH B 30 2030 2030 HOH HOH . J 4 HOH B 31 2031 2031 HOH HOH . J 4 HOH B 32 2032 2032 HOH HOH . J 4 HOH B 33 2033 2033 HOH HOH . J 4 HOH B 34 2034 2034 HOH HOH . J 4 HOH B 35 2035 2035 HOH HOH . J 4 HOH B 36 2036 2036 HOH HOH . J 4 HOH B 37 2037 2037 HOH HOH . J 4 HOH B 38 2038 2038 HOH HOH . J 4 HOH B 39 2039 2039 HOH HOH . J 4 HOH B 40 2040 2040 HOH HOH . J 4 HOH B 41 2041 2041 HOH HOH . J 4 HOH B 42 2042 2042 HOH HOH . J 4 HOH B 43 2043 2043 HOH HOH . J 4 HOH B 44 2044 2044 HOH HOH . J 4 HOH B 45 2045 2045 HOH HOH . J 4 HOH B 46 2046 2046 HOH HOH . J 4 HOH B 47 2047 2047 HOH HOH . J 4 HOH B 48 2048 2048 HOH HOH . J 4 HOH B 49 2049 2049 HOH HOH . J 4 HOH B 50 2050 2050 HOH HOH . J 4 HOH B 51 2051 2051 HOH HOH . J 4 HOH B 52 2052 2052 HOH HOH . J 4 HOH B 53 2053 2053 HOH HOH . J 4 HOH B 54 2054 2054 HOH HOH . J 4 HOH B 55 2055 2055 HOH HOH . J 4 HOH B 56 2056 2056 HOH HOH . J 4 HOH B 57 2057 2057 HOH HOH . J 4 HOH B 58 2058 2058 HOH HOH . J 4 HOH B 59 2059 2059 HOH HOH . J 4 HOH B 60 2060 2060 HOH HOH . J 4 HOH B 61 2061 2061 HOH HOH . J 4 HOH B 62 2062 2062 HOH HOH . J 4 HOH B 63 2063 2063 HOH HOH . J 4 HOH B 64 2064 2064 HOH HOH . J 4 HOH B 65 2065 2065 HOH HOH . J 4 HOH B 66 2066 2066 HOH HOH . J 4 HOH B 67 2067 2067 HOH HOH . J 4 HOH B 68 2068 2068 HOH HOH . J 4 HOH B 69 2069 2069 HOH HOH . J 4 HOH B 70 2070 2070 HOH HOH . J 4 HOH B 71 2071 2071 HOH HOH . J 4 HOH B 72 2072 2072 HOH HOH . J 4 HOH B 73 2073 2073 HOH HOH . J 4 HOH B 74 2074 2074 HOH HOH . J 4 HOH B 75 2075 2075 HOH HOH . J 4 HOH B 76 2076 2076 HOH HOH . J 4 HOH B 77 2077 2077 HOH HOH . J 4 HOH B 78 2078 2078 HOH HOH . J 4 HOH B 79 2079 2079 HOH HOH . J 4 HOH B 80 2080 2080 HOH HOH . J 4 HOH B 81 2081 2081 HOH HOH . J 4 HOH B 82 2082 2082 HOH HOH . J 4 HOH B 83 2083 2083 HOH HOH . J 4 HOH B 84 2084 2084 HOH HOH . J 4 HOH B 85 2085 2085 HOH HOH . J 4 HOH B 86 2086 2086 HOH HOH . J 4 HOH B 87 2087 2087 HOH HOH . J 4 HOH B 88 2088 2088 HOH HOH . J 4 HOH B 89 2089 2089 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 7.753 _atom_site.Cartn_y 4.651 _atom_site.Cartn_z 24.38 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 108 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 394 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #