data_2W8H # _model_server_result.job_id hfcu0kGjhLwfvoHdwyNYSw _model_server_result.datetime_utc '2025-03-26 00:38:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w8h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1335}' # _entry.id 2W8H # _exptl.entry_id 2W8H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 264.385 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2W8H _cell.length_a 141.153 _cell.length_b 141.152 _cell.length_c 167.529 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W8H _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 319 A CYS 335 1_555 I S1 MTN . A MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.995 ? covale ? covale2 A SG CYS 319 A CYS 335 1_555 I S1 MTN . A MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.996 ? covale ? covale3 B SG CYS 319 B CYS 335 1_555 J S1 MTN . B MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.002 ? covale ? covale4 B SG CYS 319 B CYS 335 1_555 J S1 MTN . B MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.999 ? covale ? covale5 C SG CYS 319 C CYS 335 1_555 K S1 MTN . C MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.994 ? covale ? covale6 C SG CYS 319 C CYS 335 1_555 K S1 MTN . C MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.997 ? covale ? covale7 D SG CYS 319 D CYS 335 1_555 L S1 MTN . D MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.996 ? covale ? covale8 D SG CYS 319 D CYS 335 1_555 L S1 MTN . D MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.994 ? covale ? covale9 E SG CYS 319 E CYS 335 1_555 N S1 MTN . E MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.995 ? covale ? covale10 E SG CYS 319 E CYS 335 1_555 N S1 MTN . E MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.991 ? covale ? covale11 F SG CYS 319 F CYS 335 1_555 O S1 MTN . F MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.998 ? covale ? covale12 F SG CYS 319 F CYS 335 1_555 O S1 MTN . F MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.992 ? covale ? covale13 G SG CYS 319 G CYS 335 1_555 P S1 MTN . G MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.997 ? covale ? covale14 G SG CYS 319 G CYS 335 1_555 P S1 MTN . G MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.996 ? covale ? covale15 H SG CYS 319 H CYS 335 1_555 Q S1 MTN . H MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 2 ? covale ? covale16 H SG CYS 319 H CYS 335 1_555 Q S1 MTN . H MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.002 ? # _chem_comp.formula 'C10 H18 N O3 S2' _chem_comp.formula_weight 264.385 _chem_comp.id MTN _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MTSL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 N1 MTN sing 237 n n N1 C1 MTN sing 238 n n N1 C5 MTN sing 239 n n C1 C2 MTN sing 240 n n C1 C8 MTN sing 241 n n C1 C9 MTN sing 242 n n C2 C3 MTN doub 243 n n C2 H2 MTN sing 244 n n C3 C4 MTN sing 245 n n C3 C5 MTN sing 246 n n C4 S1 MTN sing 247 n n C4 H41 MTN sing 248 n n C4 H42 MTN sing 249 n n C5 C6 MTN sing 250 n n C5 C7 MTN sing 251 n n C6 H61 MTN sing 252 n n C6 H62 MTN sing 253 n n C6 H63 MTN sing 254 n n C7 H71 MTN sing 255 n n C7 H72 MTN sing 256 n n C7 H73 MTN sing 257 n n C8 H81 MTN sing 258 n n C8 H82 MTN sing 259 n n C8 H83 MTN sing 260 n n C9 H91 MTN sing 261 n n C9 H92 MTN sing 262 n n C9 H93 MTN sing 263 n n S1 S2 MTN sing 264 n n S2 O2 MTN doub 265 n n S2 O3 MTN doub 266 n n S2 C12 MTN sing 267 n n C12 H4 MTN sing 268 n n C12 H1 MTN sing 269 n n C12 H3 MTN sing 270 n n # _atom_sites.entry_id 2W8H _atom_sites.fract_transf_matrix[1][1] 0.007085 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 MTN A 1 1335 1335 MTN MTN . J 2 MTN B 1 1335 1335 MTN MTN . K 2 MTN C 1 1335 1335 MTN MTN . L 2 MTN D 1 1335 1335 MTN MTN . M 3 CL D 1 1346 1346 CL CL . N 2 MTN E 1 1335 1335 MTN MTN . O 2 MTN F 1 1335 1335 MTN MTN . P 2 MTN G 1 1335 1335 MTN MTN . Q 2 MTN H 1 1335 1335 MTN MTN . R 4 HOH A 1 2001 2001 HOH HOH . R 4 HOH A 2 2002 2002 HOH HOH . R 4 HOH A 3 2003 2003 HOH HOH . R 4 HOH A 4 2004 2004 HOH HOH . S 4 HOH B 1 2001 2001 HOH HOH . T 4 HOH C 1 2001 2001 HOH HOH . T 4 HOH C 2 2002 2002 HOH HOH . T 4 HOH C 3 2003 2003 HOH HOH . T 4 HOH C 4 2004 2004 HOH HOH . U 4 HOH D 1 2001 2001 HOH HOH . V 4 HOH F 1 2001 2001 HOH HOH . W 4 HOH G 1 2001 2001 HOH HOH . W 4 HOH G 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MTN . A . I 2 -6.266 -11.062 27.46 0.51 110.63 ? O1 MTN 1335 A 1 HETATM 2 O O1 MTN . B . I 2 -9.764 -4.999 27.588 0.49 32.68 ? O1 MTN 1335 A 1 HETATM 3 N N1 MTN . A . I 2 -7.384 -11.254 27.01 0.51 99.44 ? N1 MTN 1335 A 1 HETATM 4 N N1 MTN . B . I 2 -10.675 -5.7 27.167 0.49 65.86 ? N1 MTN 1335 A 1 HETATM 5 C C1 MTN . A . I 2 -7.7 -11.166 25.592 0.51 98.88 ? C1 MTN 1335 A 1 HETATM 6 C C1 MTN . B . I 2 -11.516 -5.294 26.051 0.49 79.26 ? C1 MTN 1335 A 1 HETATM 7 C C2 MTN . A . I 2 -9.166 -11.508 25.562 0.51 79.98 ? C2 MTN 1335 A 1 HETATM 8 C C2 MTN . B . I 2 -12.501 -6.428 25.952 0.49 80.32 ? C2 MTN 1335 A 1 HETATM 9 C C3 MTN . A . I 2 -9.607 -11.74 26.805 0.51 71.57 ? C3 MTN 1335 A 1 HETATM 10 C C3 MTN . B . I 2 -12.232 -7.359 26.875 0.49 69.37 ? C3 MTN 1335 A 1 HETATM 11 C C4 MTN . A . I 2 -11.035 -12.111 27.124 0.51 61.73 ? C4 MTN 1335 A 1 HETATM 12 C C4 MTN . B . I 2 -13.062 -8.612 27.026 0.49 53.48 ? C4 MTN 1335 A 1 HETATM 13 S S1 MTN . A . I 2 -12.071 -10.734 26.759 0.51 99.03 ? S1 MTN 1335 A 1 HETATM 14 S S1 MTN . B . I 2 -12.204 -10.057 26.492 0.49 100.46 ? S1 MTN 1335 A 1 HETATM 15 C C5 MTN . A . I 2 -8.529 -11.589 27.838 0.51 76.11 ? C5 MTN 1335 A 1 HETATM 16 C C5 MTN . B . I 2 -11.04 -7.002 27.72 0.49 72.23 ? C5 MTN 1335 A 1 HETATM 17 C C6 MTN . A . I 2 -8.335 -12.921 28.555 0.51 75.88 ? C6 MTN 1335 A 1 HETATM 18 C C6 MTN . B . I 2 -11.44 -6.967 29.188 0.49 67.92 ? C6 MTN 1335 A 1 HETATM 19 C C7 MTN . A . I 2 -8.883 -10.483 28.822 0.51 50.54 ? C7 MTN 1335 A 1 HETATM 20 C C7 MTN . B . I 2 -9.923 -8.021 27.512 0.49 71.55 ? C7 MTN 1335 A 1 HETATM 21 C C8 MTN . A . I 2 -6.917 -12.159 24.747 0.51 105.3 ? C8 MTN 1335 A 1 HETATM 22 C C8 MTN . B . I 2 -12.273 -4.017 26.393 0.49 76.98 ? C8 MTN 1335 A 1 HETATM 23 C C9 MTN . A . I 2 -7.499 -9.748 25.069 0.51 102.47 ? C9 MTN 1335 A 1 HETATM 24 C C9 MTN . B . I 2 -10.754 -5.135 24.74 0.49 78.81 ? C9 MTN 1335 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 24 #