data_2W8H # _model_server_result.job_id 8DyLL1zm5-c-qyguvawTAw _model_server_result.datetime_utc '2025-03-25 17:48:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w8h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1335}' # _entry.id 2W8H # _exptl.entry_id 2W8H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 264.385 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2W8H _cell.length_a 141.153 _cell.length_b 141.152 _cell.length_c 167.529 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W8H _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 319 A CYS 335 1_555 I S1 MTN . A MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.995 ? covale ? covale2 A SG CYS 319 A CYS 335 1_555 I S1 MTN . A MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.996 ? covale ? covale3 B SG CYS 319 B CYS 335 1_555 J S1 MTN . B MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.002 ? covale ? covale4 B SG CYS 319 B CYS 335 1_555 J S1 MTN . B MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.999 ? covale ? covale5 C SG CYS 319 C CYS 335 1_555 K S1 MTN . C MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.994 ? covale ? covale6 C SG CYS 319 C CYS 335 1_555 K S1 MTN . C MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.997 ? covale ? covale7 D SG CYS 319 D CYS 335 1_555 L S1 MTN . D MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.996 ? covale ? covale8 D SG CYS 319 D CYS 335 1_555 L S1 MTN . D MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.994 ? covale ? covale9 E SG CYS 319 E CYS 335 1_555 N S1 MTN . E MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.995 ? covale ? covale10 E SG CYS 319 E CYS 335 1_555 N S1 MTN . E MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.991 ? covale ? covale11 F SG CYS 319 F CYS 335 1_555 O S1 MTN . F MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.998 ? covale ? covale12 F SG CYS 319 F CYS 335 1_555 O S1 MTN . F MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.992 ? covale ? covale13 G SG CYS 319 G CYS 335 1_555 P S1 MTN . G MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.997 ? covale ? covale14 G SG CYS 319 G CYS 335 1_555 P S1 MTN . G MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.996 ? covale ? covale15 H SG CYS 319 H CYS 335 1_555 Q S1 MTN . H MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 2 ? covale ? covale16 H SG CYS 319 H CYS 335 1_555 Q S1 MTN . H MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.002 ? # _chem_comp.formula 'C10 H18 N O3 S2' _chem_comp.formula_weight 264.385 _chem_comp.id MTN _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MTSL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 N1 MTN sing 237 n n N1 C1 MTN sing 238 n n N1 C5 MTN sing 239 n n C1 C2 MTN sing 240 n n C1 C8 MTN sing 241 n n C1 C9 MTN sing 242 n n C2 C3 MTN doub 243 n n C2 H2 MTN sing 244 n n C3 C4 MTN sing 245 n n C3 C5 MTN sing 246 n n C4 S1 MTN sing 247 n n C4 H41 MTN sing 248 n n C4 H42 MTN sing 249 n n C5 C6 MTN sing 250 n n C5 C7 MTN sing 251 n n C6 H61 MTN sing 252 n n C6 H62 MTN sing 253 n n C6 H63 MTN sing 254 n n C7 H71 MTN sing 255 n n C7 H72 MTN sing 256 n n C7 H73 MTN sing 257 n n C8 H81 MTN sing 258 n n C8 H82 MTN sing 259 n n C8 H83 MTN sing 260 n n C9 H91 MTN sing 261 n n C9 H92 MTN sing 262 n n C9 H93 MTN sing 263 n n S1 S2 MTN sing 264 n n S2 O2 MTN doub 265 n n S2 O3 MTN doub 266 n n S2 C12 MTN sing 267 n n C12 H4 MTN sing 268 n n C12 H1 MTN sing 269 n n C12 H3 MTN sing 270 n n # _atom_sites.entry_id 2W8H _atom_sites.fract_transf_matrix[1][1] 0.007085 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 MTN A 1 1335 1335 MTN MTN . J 2 MTN B 1 1335 1335 MTN MTN . K 2 MTN C 1 1335 1335 MTN MTN . L 2 MTN D 1 1335 1335 MTN MTN . M 3 CL D 1 1346 1346 CL CL . N 2 MTN E 1 1335 1335 MTN MTN . O 2 MTN F 1 1335 1335 MTN MTN . P 2 MTN G 1 1335 1335 MTN MTN . Q 2 MTN H 1 1335 1335 MTN MTN . R 4 HOH A 1 2001 2001 HOH HOH . R 4 HOH A 2 2002 2002 HOH HOH . R 4 HOH A 3 2003 2003 HOH HOH . R 4 HOH A 4 2004 2004 HOH HOH . S 4 HOH B 1 2001 2001 HOH HOH . T 4 HOH C 1 2001 2001 HOH HOH . T 4 HOH C 2 2002 2002 HOH HOH . T 4 HOH C 3 2003 2003 HOH HOH . T 4 HOH C 4 2004 2004 HOH HOH . U 4 HOH D 1 2001 2001 HOH HOH . V 4 HOH F 1 2001 2001 HOH HOH . W 4 HOH G 1 2001 2001 HOH HOH . W 4 HOH G 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MTN . A . N 2 -71.689 -35.503 28.535 0.59 29.93 ? O1 MTN 1335 E 1 HETATM 2 O O1 MTN . B . N 2 -73.052 -40.837 27.823 0.41 64.87 ? O1 MTN 1335 E 1 HETATM 3 N N1 MTN . A . N 2 -70.747 -35.964 27.904 0.59 67.47 ? N1 MTN 1335 E 1 HETATM 4 N N1 MTN . B . N 2 -71.935 -41.191 27.482 0.41 69.06 ? N1 MTN 1335 E 1 HETATM 5 C C1 MTN . A . N 2 -70.721 -36.163 26.454 0.59 73.18 ? C1 MTN 1335 E 1 HETATM 6 C C1 MTN . B . N 2 -71.643 -41.739 26.164 0.41 77.02 ? C1 MTN 1335 E 1 HETATM 7 C C2 MTN . A . N 2 -69.457 -36.956 26.255 0.59 77.45 ? C2 MTN 1335 E 1 HETATM 8 C C2 MTN . B . N 2 -70.141 -41.82 26.177 0.41 82.23 ? C2 MTN 1335 E 1 HETATM 9 C C3 MTN . A . N 2 -68.813 -37.08 27.421 0.59 81.14 ? C3 MTN 1335 E 1 HETATM 10 C C3 MTN . B . N 2 -69.674 -41.462 27.38 0.41 73.96 ? C3 MTN 1335 E 1 HETATM 11 C C4 MTN . A . N 2 -67.518 -37.833 27.559 0.59 78.78 ? C4 MTN 1335 E 1 HETATM 12 C C4 MTN . B . N 2 -68.204 -41.434 27.704 0.41 68.79 ? C4 MTN 1335 E 1 HETATM 13 S S1 MTN . A . N 2 -67.821 -39.459 26.959 0.59 40.88 ? S1 MTN 1335 E 1 HETATM 14 S S1 MTN . B . N 2 -67.562 -39.851 27.268 0.41 60.12 ? S1 MTN 1335 E 1 HETATM 15 C C5 MTN . A . N 2 -69.528 -36.408 28.555 0.59 67.8 ? C5 MTN 1335 E 1 HETATM 16 C C5 MTN . B . N 2 -70.763 -41.087 28.342 0.41 61.56 ? C5 MTN 1335 E 1 HETATM 17 C C6 MTN . A . N 2 -69.794 -37.396 29.68 0.59 60.18 ? C6 MTN 1335 E 1 HETATM 18 C C6 MTN . B . N 2 -70.781 -42.052 29.518 0.41 22.9 ? C6 MTN 1335 E 1 HETATM 19 C C7 MTN . A . N 2 -68.685 -35.23 29.034 0.59 49.1 ? C7 MTN 1335 E 1 HETATM 20 C C7 MTN . B . N 2 -70.538 -39.66 28.832 0.41 64.01 ? C7 MTN 1335 E 1 HETATM 21 C C8 MTN . A . N 2 -71.888 -37.014 25.964 0.59 58.41 ? C8 MTN 1335 E 1 HETATM 22 C C8 MTN . B . N 2 -72.205 -43.147 26.003 0.41 81.75 ? C8 MTN 1335 E 1 HETATM 23 C C9 MTN . A . N 2 -70.623 -34.871 25.658 0.59 74.21 ? C9 MTN 1335 E 1 HETATM 24 C C9 MTN . B . N 2 -72.106 -40.855 25.017 0.41 77.37 ? C9 MTN 1335 E 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 24 #