data_2W8H
#
_model_server_result.job_id            FqBlcmvizwGS-3ugHr2EeQ 
_model_server_result.datetime_utc      '2025-03-25 18:41:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2w8h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":1335}' 
#
_entry.id    2W8H 
#
_exptl.entry_id    2W8H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              264.385 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2W8H 
_cell.length_a            141.153 
_cell.length_b            141.152 
_cell.length_c            167.529 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2W8H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 319 A CYS 335 1_555 I S1 MTN . A MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.995 ? 
covale ? covale2 A SG CYS 319 A CYS 335 1_555 I S1 MTN . A MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.996 ? 
covale ? covale3 B SG CYS 319 B CYS 335 1_555 J S1 MTN . B MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.002 ? 
covale ? covale4 B SG CYS 319 B CYS 335 1_555 J S1 MTN . B MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.999 ? 
covale ? covale5 C SG CYS 319 C CYS 335 1_555 K S1 MTN . C MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.994 ? 
covale ? covale6 C SG CYS 319 C CYS 335 1_555 K S1 MTN . C MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.997 ? 
covale ? covale7 D SG CYS 319 D CYS 335 1_555 L S1 MTN . D MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.996 ? 
covale ? covale8 D SG CYS 319 D CYS 335 1_555 L S1 MTN . D MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.994 ? 
covale ? covale9 E SG CYS 319 E CYS 335 1_555 N S1 MTN . E MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.995 ? 
covale ? covale10 E SG CYS 319 E CYS 335 1_555 N S1 MTN . E MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.991 ? 
covale ? covale11 F SG CYS 319 F CYS 335 1_555 O S1 MTN . F MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.998 ? 
covale ? covale12 F SG CYS 319 F CYS 335 1_555 O S1 MTN . F MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.992 ? 
covale ? covale13 G SG CYS 319 G CYS 335 1_555 P S1 MTN . G MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.997 ? 
covale ? covale14 G SG CYS 319 G CYS 335 1_555 P S1 MTN . G MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.996 ? 
covale ? covale15 H SG CYS 319 H CYS 335 1_555 Q S1 MTN . H MTN 1335 1_555 ? B ? ? B ? ? ? ? ? ? ? 2 ? 
covale ? covale16 H SG CYS 319 H CYS 335 1_555 Q S1 MTN . H MTN 1335 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.002 ? 
#
_chem_comp.formula           'C10 H18 N O3 S2' 
_chem_comp.formula_weight    264.385 
_chem_comp.id                MTN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     MTSL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 N1 MTN sing 237 n n 
N1 C1 MTN sing 238 n n 
N1 C5 MTN sing 239 n n 
C1 C2 MTN sing 240 n n 
C1 C8 MTN sing 241 n n 
C1 C9 MTN sing 242 n n 
C2 C3 MTN doub 243 n n 
C2 H2 MTN sing 244 n n 
C3 C4 MTN sing 245 n n 
C3 C5 MTN sing 246 n n 
C4 S1 MTN sing 247 n n 
C4 H41 MTN sing 248 n n 
C4 H42 MTN sing 249 n n 
C5 C6 MTN sing 250 n n 
C5 C7 MTN sing 251 n n 
C6 H61 MTN sing 252 n n 
C6 H62 MTN sing 253 n n 
C6 H63 MTN sing 254 n n 
C7 H71 MTN sing 255 n n 
C7 H72 MTN sing 256 n n 
C7 H73 MTN sing 257 n n 
C8 H81 MTN sing 258 n n 
C8 H82 MTN sing 259 n n 
C8 H83 MTN sing 260 n n 
C9 H91 MTN sing 261 n n 
C9 H92 MTN sing 262 n n 
C9 H93 MTN sing 263 n n 
S1 S2 MTN sing 264 n n 
S2 O2 MTN doub 265 n n 
S2 O3 MTN doub 266 n n 
S2 C12 MTN sing 267 n n 
C12 H4 MTN sing 268 n n 
C12 H1 MTN sing 269 n n 
C12 H3 MTN sing 270 n n 
#
_atom_sites.entry_id                     2W8H 
_atom_sites.fract_transf_matrix[1][1]    0.007085 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007085 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005969 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 MTN A 1 1335 1335 MTN MTN . 
J 2 MTN B 1 1335 1335 MTN MTN . 
K 2 MTN C 1 1335 1335 MTN MTN . 
L 2 MTN D 1 1335 1335 MTN MTN . 
M 3 CL D 1 1346 1346 CL CL . 
N 2 MTN E 1 1335 1335 MTN MTN . 
O 2 MTN F 1 1335 1335 MTN MTN . 
P 2 MTN G 1 1335 1335 MTN MTN . 
Q 2 MTN H 1 1335 1335 MTN MTN . 
R 4 HOH A 1 2001 2001 HOH HOH . 
R 4 HOH A 2 2002 2002 HOH HOH . 
R 4 HOH A 3 2003 2003 HOH HOH . 
R 4 HOH A 4 2004 2004 HOH HOH . 
S 4 HOH B 1 2001 2001 HOH HOH . 
T 4 HOH C 1 2001 2001 HOH HOH . 
T 4 HOH C 2 2002 2002 HOH HOH . 
T 4 HOH C 3 2003 2003 HOH HOH . 
T 4 HOH C 4 2004 2004 HOH HOH . 
U 4 HOH D 1 2001 2001 HOH HOH . 
V 4 HOH F 1 2001 2001 HOH HOH . 
W 4 HOH G 1 2001 2001 HOH HOH . 
W 4 HOH G 2 2002 2002 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 MTN . A . Q 2 -8.613 -63.954 26.648 0.65 94.82 ? O1 MTN 1335 H 1 
HETATM 2 O O1 MTN . B . Q 2 -2.475 -60.606 26.093 0.35 86.08 ? O1 MTN 1335 H 1 
HETATM 3 N N1 MTN . A . Q 2 -8.665 -62.843 26.151 0.65 79.26 ? N1 MTN 1335 H 1 
HETATM 4 N N1 MTN . B . Q 2 -3.201 -59.696 25.725 0.35 90.33 ? N1 MTN 1335 H 1 
HETATM 5 C C1 MTN . A . Q 2 -8.418 -62.575 24.741 0.65 82.03 ? C1 MTN 1335 H 1 
HETATM 6 C C1 MTN . B . Q 2 -2.882 -58.818 24.61 0.35 92.9 ? C1 MTN 1335 H 1 
HETATM 7 C C2 MTN . A . Q 2 -8.405 -61.072 24.7 0.65 87.69 ? C2 MTN 1335 H 1 
HETATM 8 C C2 MTN . B . Q 2 -4.056 -57.876 24.587 0.35 90.1 ? C2 MTN 1335 H 1 
HETATM 9 C C3 MTN . A . Q 2 -8.694 -60.582 25.913 0.65 89.96 ? C3 MTN 1335 H 1 
HETATM 10 C C3 MTN . B . Q 2 -4.919 -58.198 25.557 0.35 84.95 ? C3 MTN 1335 H 1 
HETATM 11 C C4 MTN . A . Q 2 -8.754 -59.104 26.196 0.65 100.5 ? C4 MTN 1335 H 1 
HETATM 12 C C4 MTN . B . Q 2 -6.199 -57.437 25.791 0.35 82.57 ? C4 MTN 1335 H 1 
HETATM 13 S S1 MTN . A . Q 2 -7.481 -58.336 25.25 0.65 91.75 ? S1 MTN 1335 H 1 
HETATM 14 S S1 MTN . B . Q 2 -7.591 -58.363 25.234 0.35 91.7 ? S1 MTN 1335 H 1 
HETATM 15 C C5 MTN . A . Q 2 -8.965 -61.656 26.926 0.65 58.18 ? C5 MTN 1335 H 1 
HETATM 16 C C5 MTN . B . Q 2 -4.471 -59.387 26.36 0.35 85.64 ? C5 MTN 1335 H 1 
HETATM 17 C C6 MTN . A . Q 2 -8.091 -61.509 28.164 0.65 38.46 ? C6 MTN 1335 H 1 
HETATM 18 C C6 MTN . B . Q 2 -4.338 -59.021 27.831 0.35 81.56 ? C6 MTN 1335 H 1 
HETATM 19 C C7 MTN . A . Q 2 -10.441 -61.617 27.291 0.65 36.74 ? C7 MTN 1335 H 1 
HETATM 20 C C7 MTN . B . Q 2 -5.449 -60.541 26.182 0.35 80.93 ? C7 MTN 1335 H 1 
HETATM 21 C C8 MTN . A . Q 2 -7.044 -63.068 24.308 0.65 72.26 ? C8 MTN 1335 H 1 
HETATM 22 C C8 MTN . B . Q 2 -1.613 -58.018 24.882 0.35 91.46 ? C8 MTN 1335 H 1 
HETATM 23 C C9 MTN . A . Q 2 -9.504 -63.127 23.827 0.65 88.54 ? C9 MTN 1335 H 1 
HETATM 24 C C9 MTN . B . Q 2 -2.783 -59.554 23.281 0.35 89.26 ? C9 MTN 1335 H 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           24 
#