data_2W8Q # _model_server_result.job_id R9yrTARpafDLWqm-OcQiMA _model_server_result.datetime_utc '2024-11-21 23:17:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w8q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":3001}' # _entry.id 2W8Q # _exptl.entry_id 2W8Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.088 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SUCCINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2W8Q _cell.length_a 265.4 _cell.length_b 265.4 _cell.length_c 265.4 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W8Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 4 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dodecameric 12 author_and_software_defined_assembly 1 PQS tetrameric 4 author_and_software_defined_assembly 2 PQS dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1,2,3,4,5,6,7,8,9,10,11,12 A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,2,13,14 A,B,C,D,E,F,G,H,I,J,K,L,M,N 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 28_544 x,-y-1/2,-z-1/2 1 0 0 0 -1 0 0 0 -1 0 -132.7 -132.7 3 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 4 'crystal symmetry operation' 83_545 y+1/2,-z-1/2,-x 0 1 0 0 0 -1 -1 0 0 132.7 -132.7 0 5 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 54_554 z+1/2,-x,-y-1/2 0 0 1 -1 0 0 0 -1 0 132.7 0 -132.7 7 'crystal symmetry operation' 32_544 -z,x-1/2,-y-1/2 0 0 -1 1 0 0 0 -1 0 0 -132.7 -132.7 8 'crystal symmetry operation' 77_545 z+1/2,x-1/2,y 0 0 1 1 0 0 0 1 0 132.7 -132.7 0 9 'crystal symmetry operation' 36_544 -y,-z-1/2,x-1/2 0 -1 0 0 0 -1 1 0 0 0 -132.7 -132.7 10 'crystal symmetry operation' 57_554 y+1/2,z,x-1/2 0 1 0 0 0 1 1 0 0 132.7 0 -132.7 11 'crystal symmetry operation' 51_554 -x+1/2,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 132.7 0 -132.7 12 'crystal symmetry operation' 74_545 -x+1/2,-y-1/2,z -1 0 0 0 -1 0 0 0 1 132.7 -132.7 0 13 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 14 'crystal symmetry operation' 43_544 -x,-z-1/2,-y-1/2 -1 0 0 0 0 -1 0 -1 0 0 -132.7 -132.7 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H6 O4' _chem_comp.formula_weight 118.088 _chem_comp.id SIN _chem_comp.mon_nstd_flag . _chem_comp.name 'SUCCINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 SIN doub 303 n n C1 O2 SIN sing 304 n n C1 C2 SIN sing 305 n n O2 HO2 SIN sing 306 n n C2 C3 SIN sing 307 n n C2 H21 SIN sing 308 n n C2 H22 SIN sing 309 n n C3 C4 SIN sing 310 n n C3 H31 SIN sing 311 n n C3 H32 SIN sing 312 n n C4 O3 SIN doub 313 n n C4 O4 SIN sing 314 n n O4 HO4 SIN sing 315 n n # _atom_sites.entry_id 2W8Q _atom_sites.fract_transf_matrix[1][1] 0.003768 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003768 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1001 1001 SO4 SO4 . C 2 SO4 A 1 1002 1002 SO4 SO4 . D 2 SO4 A 1 1003 1003 SO4 SO4 . E 2 SO4 A 1 1004 1004 SO4 SO4 . F 2 SO4 A 1 1005 1005 SO4 SO4 . G 2 SO4 A 1 1006 1006 SO4 SO4 . H 2 SO4 A 1 1007 1007 SO4 SO4 . I 2 SO4 A 1 1008 1008 SO4 SO4 . J 2 SO4 A 1 1009 1009 SO4 SO4 . K 3 GOL A 1 1101 1101 GOL GOL . L 3 GOL A 1 1102 1102 GOL GOL . M 4 SIN A 1 3001 3001 SIN SIN . N 5 HOH A 1 2001 2001 HOH HOH . N 5 HOH A 2 2002 2002 HOH HOH . N 5 HOH A 3 2003 2003 HOH HOH . N 5 HOH A 4 2004 2004 HOH HOH . N 5 HOH A 5 2005 2005 HOH HOH . N 5 HOH A 6 2006 2006 HOH HOH . N 5 HOH A 7 2007 2007 HOH HOH . N 5 HOH A 8 2008 2008 HOH HOH . N 5 HOH A 9 2009 2009 HOH HOH . N 5 HOH A 10 2010 2010 HOH HOH . N 5 HOH A 11 2011 2011 HOH HOH . N 5 HOH A 12 2012 2012 HOH HOH . N 5 HOH A 13 2013 2013 HOH HOH . N 5 HOH A 14 2014 2014 HOH HOH . N 5 HOH A 15 2015 2015 HOH HOH . N 5 HOH A 16 2016 2016 HOH HOH . N 5 HOH A 17 2017 2017 HOH HOH . N 5 HOH A 18 2018 2018 HOH HOH . N 5 HOH A 19 2019 2019 HOH HOH . N 5 HOH A 20 2020 2020 HOH HOH . N 5 HOH A 21 2021 2021 HOH HOH . N 5 HOH A 22 2022 2022 HOH HOH . N 5 HOH A 23 2023 2023 HOH HOH . N 5 HOH A 24 2024 2024 HOH HOH . N 5 HOH A 25 2025 2025 HOH HOH . N 5 HOH A 26 2026 2026 HOH HOH . N 5 HOH A 27 2027 2027 HOH HOH . N 5 HOH A 28 2028 2028 HOH HOH . N 5 HOH A 29 2029 2029 HOH HOH . N 5 HOH A 30 2030 2030 HOH HOH . N 5 HOH A 31 2031 2031 HOH HOH . N 5 HOH A 32 2032 2032 HOH HOH . N 5 HOH A 33 2033 2033 HOH HOH . N 5 HOH A 34 2034 2034 HOH HOH . N 5 HOH A 35 2035 2035 HOH HOH . N 5 HOH A 36 2036 2036 HOH HOH . N 5 HOH A 37 2037 2037 HOH HOH . N 5 HOH A 38 2038 2038 HOH HOH . N 5 HOH A 39 2039 2039 HOH HOH . N 5 HOH A 40 2040 2040 HOH HOH . N 5 HOH A 41 2041 2041 HOH HOH . N 5 HOH A 42 2042 2042 HOH HOH . N 5 HOH A 43 2043 2043 HOH HOH . N 5 HOH A 44 2044 2044 HOH HOH . N 5 HOH A 45 2045 2045 HOH HOH . N 5 HOH A 46 2046 2046 HOH HOH . N 5 HOH A 47 2047 2047 HOH HOH . N 5 HOH A 48 2048 2048 HOH HOH . N 5 HOH A 49 2049 2049 HOH HOH . N 5 HOH A 50 2050 2050 HOH HOH . N 5 HOH A 51 2051 2051 HOH HOH . N 5 HOH A 52 2052 2052 HOH HOH . N 5 HOH A 53 2053 2053 HOH HOH . N 5 HOH A 54 2054 2054 HOH HOH . N 5 HOH A 55 2055 2055 HOH HOH . N 5 HOH A 56 2056 2056 HOH HOH . N 5 HOH A 57 2057 2057 HOH HOH . N 5 HOH A 58 2058 2058 HOH HOH . N 5 HOH A 59 2059 2059 HOH HOH . N 5 HOH A 60 2060 2060 HOH HOH . N 5 HOH A 61 2061 2061 HOH HOH . N 5 HOH A 62 2062 2062 HOH HOH . N 5 HOH A 63 2063 2063 HOH HOH . N 5 HOH A 64 2064 2064 HOH HOH . N 5 HOH A 65 2065 2065 HOH HOH . N 5 HOH A 66 2066 2066 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIN . . . M 4 16.252 -45.181 -66.366 1 63.17 ? C1 SIN 3001 A 1 HETATM 2 O O1 SIN . . . M 4 15.901 -44.847 -65.039 1 62.83 ? O1 SIN 3001 A 1 HETATM 3 O O2 SIN . . . M 4 15.693 -44.611 -67.345 1 61.76 ? O2 SIN 3001 A 1 HETATM 4 C C2 SIN . . . M 4 17.319 -46.237 -66.542 1 64.45 ? C2 SIN 3001 A 1 HETATM 5 C C3 SIN . . . M 4 18.674 -45.571 -66.8 1 66.29 ? C3 SIN 3001 A 1 HETATM 6 C C4 SIN . . . M 4 19.726 -46.632 -67.092 1 66.97 ? C4 SIN 3001 A 1 HETATM 7 O O3 SIN . . . M 4 20.925 -46.338 -67.363 1 67.03 ? O3 SIN 3001 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #