data_2W97 # _model_server_result.job_id menfVgK9jghMccMRBQA02g _model_server_result.datetime_utc '2024-10-18 17:22:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w97 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1218}' # _entry.id 2W97 # _exptl.entry_id 2W97 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 537.227 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[[(2R,3S,4R,5R)-5-(6-AMINO-3-METHYL-4-OXO-5H-IMIDAZO[4,5-C]PYRIDIN-1-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL] PHOSPHONO HYDROGEN PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.51 _cell.angle_gamma 90 _cell.entry_id 2W97 _cell.length_a 84.106 _cell.length_b 38.201 _cell.length_c 93.687 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W97 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H20 N4 O14 P3 1' _chem_comp.formula_weight 537.227 _chem_comp.id MGO _chem_comp.mon_nstd_flag . _chem_comp.name '[[(2R,3S,4R,5R)-5-(6-AMINO-3-METHYL-4-OXO-5H-IMIDAZO[4,5-C]PYRIDIN-1-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL] PHOSPHONO HYDROGEN PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAJ PBE MGO sing 250 n n PBE OAD MGO sing 251 n n PBE OAI MGO doub 252 n n PBE OAS MGO sing 253 n n OAS PBG MGO sing 254 n n PBG OAL MGO sing 255 n n PBG OAF MGO doub 256 n n PBG OAT MGO sing 257 n n OAT PBF MGO sing 258 n n PBF OAK MGO sing 259 n n PBF OAE MGO doub 260 n n PBF O5' MGO sing 261 n n O5' C5' MGO sing 262 n n C5' C4' MGO sing 263 n n C4' O4' MGO sing 264 n n C4' C3' MGO sing 265 n n O4' C1' MGO sing 266 n n C3' O3' MGO sing 267 n n C3' C2' MGO sing 268 n n C2' O2' MGO sing 269 n n C2' C1' MGO sing 270 n n C1' NBC MGO sing 271 n n NBC CAN MGO sing 272 n y NBC CAW MGO sing 273 n y CAN NBD MGO doub 274 n y NBD CAA MGO sing 275 n n NBD CAX MGO sing 276 n y CAX CAW MGO doub 277 n y CAX CAV MGO sing 278 n n CAW CAM MGO sing 279 n n CAM CAU MGO doub 280 n n CAU NAB MGO sing 281 n n CAU NAP MGO sing 282 n n NAP CAV MGO sing 283 n n CAV OAC MGO doub 284 n n OAJ HAJ MGO sing 285 n n OAD HAD MGO sing 286 n n OAL HAL MGO sing 287 n n OAK HAK MGO sing 288 n n C5' H51 MGO sing 289 n n C5' H52 MGO sing 290 n n C4' H4 MGO sing 291 n n C3' H3 MGO sing 292 n n C1' H1 MGO sing 293 n n O3' HA MGO sing 294 n n C2' H2 MGO sing 295 n n O2' HB MGO sing 296 n n CAN HAN MGO sing 297 n n CAA HAA1 MGO sing 298 n n CAA HAA2 MGO sing 299 n n CAA HAA3 MGO sing 300 n n CAM HAM MGO sing 301 n n NAB HAB1 MGO sing 302 n n NAB HAB2 MGO sing 303 n n NAP HAP MGO sing 304 n n # _atom_sites.entry_id 2W97 _atom_sites.fract_transf_matrix[1][1] 0.01189 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002421 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026177 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010893 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 MGO A 1 1218 1218 MGO MGO . F 5 PGE A 1 1219 1219 PGE PGE . G 6 SO4 A 1 1220 1220 SO4 SO4 . H 6 SO4 A 1 1221 1221 SO4 SO4 . I 7 GOL A 1 1222 1222 GOL GOL . J 6 SO4 B 1 1218 1218 SO4 SO4 . K 6 SO4 B 1 1219 1219 SO4 SO4 . L 7 GOL B 1 1220 1220 GOL GOL . M 8 HOH A 1 2001 2001 HOH HOH . M 8 HOH A 2 2002 2002 HOH HOH . M 8 HOH A 3 2003 2003 HOH HOH . M 8 HOH A 4 2004 2004 HOH HOH . M 8 HOH A 5 2005 2005 HOH HOH . M 8 HOH A 6 2006 2006 HOH HOH . M 8 HOH A 7 2007 2007 HOH HOH . M 8 HOH A 8 2008 2008 HOH HOH . M 8 HOH A 9 2009 2009 HOH HOH . M 8 HOH A 10 2010 2010 HOH HOH . M 8 HOH A 11 2011 2011 HOH HOH . M 8 HOH A 12 2012 2012 HOH HOH . M 8 HOH A 13 2013 2013 HOH HOH . M 8 HOH A 14 2014 2014 HOH HOH . M 8 HOH A 15 2015 2015 HOH HOH . M 8 HOH A 16 2016 2016 HOH HOH . M 8 HOH A 17 2017 2017 HOH HOH . M 8 HOH A 18 2018 2018 HOH HOH . M 8 HOH A 19 2019 2019 HOH HOH . M 8 HOH A 20 2020 2020 HOH HOH . M 8 HOH A 21 2021 2021 HOH HOH . M 8 HOH A 22 2022 2022 HOH HOH . M 8 HOH A 23 2023 2023 HOH HOH . M 8 HOH A 24 2024 2024 HOH HOH . M 8 HOH A 25 2025 2025 HOH HOH . M 8 HOH A 26 2026 2026 HOH HOH . M 8 HOH A 27 2027 2027 HOH HOH . M 8 HOH A 28 2028 2028 HOH HOH . M 8 HOH A 29 2029 2029 HOH HOH . M 8 HOH A 30 2030 2030 HOH HOH . M 8 HOH A 31 2031 2031 HOH HOH . M 8 HOH A 32 2032 2032 HOH HOH . M 8 HOH A 33 2033 2033 HOH HOH . M 8 HOH A 34 2034 2034 HOH HOH . M 8 HOH A 35 2035 2035 HOH HOH . M 8 HOH A 36 2036 2036 HOH HOH . M 8 HOH A 37 2037 2037 HOH HOH . M 8 HOH A 38 2038 2038 HOH HOH . M 8 HOH A 39 2039 2039 HOH HOH . M 8 HOH A 40 2040 2040 HOH HOH . M 8 HOH A 41 2041 2041 HOH HOH . M 8 HOH A 42 2042 2042 HOH HOH . M 8 HOH A 43 2043 2043 HOH HOH . M 8 HOH A 44 2044 2044 HOH HOH . M 8 HOH A 45 2045 2045 HOH HOH . M 8 HOH A 46 2046 2046 HOH HOH . M 8 HOH A 47 2047 2047 HOH HOH . M 8 HOH A 48 2048 2048 HOH HOH . M 8 HOH A 49 2049 2049 HOH HOH . M 8 HOH A 50 2050 2050 HOH HOH . M 8 HOH A 51 2051 2051 HOH HOH . M 8 HOH A 52 2052 2052 HOH HOH . M 8 HOH A 53 2053 2053 HOH HOH . M 8 HOH A 54 2054 2054 HOH HOH . M 8 HOH A 55 2055 2055 HOH HOH . M 8 HOH A 56 2056 2056 HOH HOH . M 8 HOH A 57 2057 2057 HOH HOH . M 8 HOH A 58 2058 2058 HOH HOH . M 8 HOH A 59 2059 2059 HOH HOH . M 8 HOH A 60 2060 2060 HOH HOH . M 8 HOH A 61 2061 2061 HOH HOH . M 8 HOH A 62 2062 2062 HOH HOH . M 8 HOH A 63 2063 2063 HOH HOH . M 8 HOH A 64 2064 2064 HOH HOH . M 8 HOH A 65 2065 2065 HOH HOH . M 8 HOH A 66 2066 2066 HOH HOH . M 8 HOH A 67 2067 2067 HOH HOH . M 8 HOH A 68 2068 2068 HOH HOH . M 8 HOH A 69 2069 2069 HOH HOH . M 8 HOH A 70 2070 2070 HOH HOH . M 8 HOH A 71 2071 2071 HOH HOH . M 8 HOH A 72 2072 2072 HOH HOH . M 8 HOH A 73 2073 2073 HOH HOH . M 8 HOH A 74 2074 2074 HOH HOH . M 8 HOH A 75 2075 2075 HOH HOH . M 8 HOH A 76 2076 2076 HOH HOH . M 8 HOH A 77 2077 2077 HOH HOH . M 8 HOH A 78 2078 2078 HOH HOH . M 8 HOH A 79 2079 2079 HOH HOH . M 8 HOH A 80 2080 2080 HOH HOH . M 8 HOH A 81 2081 2081 HOH HOH . M 8 HOH A 82 2082 2082 HOH HOH . N 8 HOH B 1 2001 2001 HOH HOH . N 8 HOH B 2 2002 2002 HOH HOH . N 8 HOH B 3 2003 2003 HOH HOH . N 8 HOH B 4 2004 2004 HOH HOH . N 8 HOH B 5 2005 2005 HOH HOH . N 8 HOH B 6 2006 2006 HOH HOH . N 8 HOH B 7 2007 2007 HOH HOH . N 8 HOH B 8 2008 2008 HOH HOH . N 8 HOH B 9 2009 2009 HOH HOH . N 8 HOH B 10 2010 2010 HOH HOH . N 8 HOH B 11 2011 2011 HOH HOH . N 8 HOH B 12 2012 2012 HOH HOH . N 8 HOH B 13 2013 2013 HOH HOH . N 8 HOH B 14 2014 2014 HOH HOH . N 8 HOH B 15 2015 2015 HOH HOH . N 8 HOH B 16 2016 2016 HOH HOH . N 8 HOH B 17 2017 2017 HOH HOH . N 8 HOH B 18 2018 2018 HOH HOH . N 8 HOH B 19 2019 2019 HOH HOH . N 8 HOH B 20 2020 2020 HOH HOH . N 8 HOH B 21 2021 2021 HOH HOH . N 8 HOH B 22 2022 2022 HOH HOH . N 8 HOH B 23 2023 2023 HOH HOH . N 8 HOH B 24 2024 2024 HOH HOH . N 8 HOH B 25 2025 2025 HOH HOH . N 8 HOH B 26 2026 2026 HOH HOH . N 8 HOH B 27 2027 2027 HOH HOH . N 8 HOH B 28 2028 2028 HOH HOH . N 8 HOH B 29 2029 2029 HOH HOH . N 8 HOH B 30 2030 2030 HOH HOH . N 8 HOH B 31 2031 2031 HOH HOH . N 8 HOH B 32 2032 2032 HOH HOH . N 8 HOH B 33 2033 2033 HOH HOH . N 8 HOH B 34 2034 2034 HOH HOH . N 8 HOH B 35 2035 2035 HOH HOH . N 8 HOH B 36 2036 2036 HOH HOH . N 8 HOH B 37 2037 2037 HOH HOH . N 8 HOH B 38 2038 2038 HOH HOH . N 8 HOH B 39 2039 2039 HOH HOH . N 8 HOH B 40 2040 2040 HOH HOH . N 8 HOH B 41 2041 2041 HOH HOH . N 8 HOH B 42 2042 2042 HOH HOH . N 8 HOH B 43 2043 2043 HOH HOH . N 8 HOH B 44 2044 2044 HOH HOH . N 8 HOH B 45 2045 2045 HOH HOH . N 8 HOH B 46 2046 2046 HOH HOH . N 8 HOH B 47 2047 2047 HOH HOH . N 8 HOH B 48 2048 2048 HOH HOH . N 8 HOH B 49 2049 2049 HOH HOH . N 8 HOH B 50 2050 2050 HOH HOH . N 8 HOH B 51 2051 2051 HOH HOH . N 8 HOH B 52 2052 2052 HOH HOH . N 8 HOH B 53 2053 2053 HOH HOH . N 8 HOH B 54 2054 2054 HOH HOH . N 8 HOH B 55 2055 2055 HOH HOH . N 8 HOH B 56 2056 2056 HOH HOH . N 8 HOH B 57 2057 2057 HOH HOH . N 8 HOH B 58 2058 2058 HOH HOH . N 8 HOH B 59 2059 2059 HOH HOH . N 8 HOH B 60 2060 2060 HOH HOH . N 8 HOH B 61 2061 2061 HOH HOH . N 8 HOH B 62 2062 2062 HOH HOH . N 8 HOH B 63 2063 2063 HOH HOH . N 8 HOH B 64 2064 2064 HOH HOH . N 8 HOH B 65 2065 2065 HOH HOH . N 8 HOH B 66 2066 2066 HOH HOH . N 8 HOH B 67 2067 2067 HOH HOH . N 8 HOH B 68 2068 2068 HOH HOH . N 8 HOH B 69 2069 2069 HOH HOH . N 8 HOH B 70 2070 2070 HOH HOH . N 8 HOH B 71 2071 2071 HOH HOH . N 8 HOH B 72 2072 2072 HOH HOH . N 8 HOH B 73 2073 2073 HOH HOH . N 8 HOH B 74 2074 2074 HOH HOH . N 8 HOH B 75 2075 2075 HOH HOH . N 8 HOH B 76 2076 2076 HOH HOH . N 8 HOH B 77 2077 2077 HOH HOH . N 8 HOH B 78 2078 2078 HOH HOH . O 8 HOH E 1 2001 2001 HOH HOH . O 8 HOH E 2 2002 2002 HOH HOH . P 8 HOH F 1 2001 2001 HOH HOH . P 8 HOH F 2 2002 2002 HOH HOH . P 8 HOH F 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAJ MGO . . . E 4 28.91 8.622 9.046 1 39.06 ? OAJ MGO 1218 A 1 HETATM 2 P PBE MGO . . . E 4 28.132 7.258 8.757 1 35.85 ? PBE MGO 1218 A 1 HETATM 3 O OAD MGO . . . E 4 28.925 6.2 9.71 1 36.87 ? OAD MGO 1218 A 1 HETATM 4 O OAI MGO . . . E 4 28.215 6.877 7.318 1 36.85 ? OAI MGO 1218 A 1 HETATM 5 O OAS MGO . . . E 4 26.636 7.41 9.417 1 33.02 ? OAS MGO 1218 A 1 HETATM 6 P PBG MGO . . . E 4 25.221 7.019 8.717 1 27.52 ? PBG MGO 1218 A 1 HETATM 7 O OAL MGO . . . E 4 24.237 6.978 9.908 1 27.83 ? OAL MGO 1218 A 1 HETATM 8 O OAF MGO . . . E 4 24.868 8.056 7.73 1 30.28 ? OAF MGO 1218 A 1 HETATM 9 O OAT MGO . . . E 4 25.305 5.569 8.008 1 25.54 ? OAT MGO 1218 A 1 HETATM 10 P PBF MGO . . . E 4 24.876 4.082 8.613 1 22.11 ? PBF MGO 1218 A 1 HETATM 11 O OAK MGO . . . E 4 25.057 3.14 7.314 1 20.21 ? OAK MGO 1218 A 1 HETATM 12 O OAE MGO . . . E 4 23.54 4.052 9.209 1 21.32 ? OAE MGO 1218 A 1 HETATM 13 O O5' MGO . . . E 4 26.074 3.721 9.65 1 21.84 ? O5' MGO 1218 A 1 HETATM 14 C C5' MGO . . . E 4 26.052 4.267 11 1 20.75 ? C5' MGO 1218 A 1 HETATM 15 C C4' MGO . . . E 4 26.74 3.318 11.959 1 22 ? C4' MGO 1218 A 1 HETATM 16 O O4' MGO . . . E 4 25.901 2.159 12.179 1 22.8 ? O4' MGO 1218 A 1 HETATM 17 C C3' MGO . . . E 4 27.996 2.73 11.299 1 22.81 ? C3' MGO 1218 A 1 HETATM 18 O O3' MGO . . . E 4 29.088 3.659 11.378 1 24.19 ? O3' MGO 1218 A 1 HETATM 19 C C2' MGO . . . E 4 28.207 1.498 12.151 1 23.07 ? C2' MGO 1218 A 1 HETATM 20 O O2' MGO . . . E 4 28.65 1.837 13.483 1 22.5 ? O2' MGO 1218 A 1 HETATM 21 C C1' MGO . . . E 4 26.763 0.996 12.229 1 22.23 ? C1' MGO 1218 A 1 HETATM 22 N NBC MGO . . . E 4 26.47 0.076 11.11 1 22.81 ? NBC MGO 1218 A 1 HETATM 23 C CAN MGO . . . E 4 25.944 0.364 9.914 1 22.92 ? CAN MGO 1218 A 1 HETATM 24 N NBD MGO . . . E 4 25.836 -0.774 9.226 1 23.25 ? NBD MGO 1218 A 1 HETATM 25 C CAA MGO . . . E 4 25.305 -0.851 7.852 1 21.96 ? CAA MGO 1218 A 1 HETATM 26 C CAX MGO . . . E 4 26.279 -1.808 9.967 1 22.95 ? CAX MGO 1218 A 1 HETATM 27 C CAW MGO . . . E 4 26.679 -1.243 11.18 1 22.81 ? CAW MGO 1218 A 1 HETATM 28 C CAM MGO . . . E 4 27.199 -2.024 12.206 1 21.31 ? CAM MGO 1218 A 1 HETATM 29 C CAU MGO . . . E 4 27.336 -3.384 12.023 1 22.42 ? CAU MGO 1218 A 1 HETATM 30 N NAB MGO . . . E 4 27.826 -4.119 12.991 1 22.65 ? NAB MGO 1218 A 1 HETATM 31 N NAP MGO . . . E 4 26.944 -3.975 10.816 1 22.71 ? NAP MGO 1218 A 1 HETATM 32 C CAV MGO . . . E 4 26.405 -3.196 9.779 1 22.16 ? CAV MGO 1218 A 1 HETATM 33 O OAC MGO . . . E 4 26.061 -3.752 8.731 1 22.04 ? OAC MGO 1218 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 33 #