data_2W9G # _model_server_result.job_id 5cXYQ-MeNL2x1IT-c_o5MA _model_server_result.datetime_utc '2024-11-05 03:39:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w9g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1159}' # _entry.id 2W9G # _exptl.entry_id 2W9G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 290.318 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRIMETHOPRIM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2W9G _cell.length_a 79.287 _cell.length_b 79.287 _cell.length_c 106.254 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W9G _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H18 N4 O3' _chem_comp.formula_weight 290.318 _chem_comp.id TOP _chem_comp.mon_nstd_flag . _chem_comp.name TRIMETHOPRIM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 TOP doub 375 n y C1 C8 TOP sing 376 n y C1 H1 TOP sing 377 n n N2 C3 TOP sing 378 n y C3 N4 TOP sing 379 n n C3 N5 TOP doub 380 n y N4 HN41 TOP sing 381 n n N4 HN42 TOP sing 382 n n N5 C6 TOP sing 383 n y C6 N7 TOP sing 384 n n C6 C8 TOP doub 385 n y N7 HN71 TOP sing 386 n n N7 HN72 TOP sing 387 n n C8 C9 TOP sing 388 n n C9 C10 TOP sing 389 n n C9 H91 TOP sing 390 n n C9 H92 TOP sing 391 n n C10 C11 TOP doub 392 n y C10 C21 TOP sing 393 n y C11 C12 TOP sing 394 n y C11 H11 TOP sing 395 n n C12 O13 TOP sing 396 n n C12 C15 TOP doub 397 n y O13 C14 TOP sing 398 n n C14 H141 TOP sing 399 n n C14 H142 TOP sing 400 n n C14 H143 TOP sing 401 n n C15 O16 TOP sing 402 n n C15 C18 TOP sing 403 n y O16 C17 TOP sing 404 n n C17 H171 TOP sing 405 n n C17 H172 TOP sing 406 n n C17 H173 TOP sing 407 n n C18 O19 TOP sing 408 n n C18 C21 TOP doub 409 n y O19 C20 TOP sing 410 n n C20 H201 TOP sing 411 n n C20 H202 TOP sing 412 n n C20 H203 TOP sing 413 n n C21 H21 TOP sing 414 n n # _atom_sites.entry_id 2W9G _atom_sites.fract_transf_matrix[1][1] 0.012612 _atom_sites.fract_transf_matrix[1][2] 0.007282 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TOP A 1 1159 1159 TOP TOP . C 3 NDP A 1 1160 1160 NDP NDP . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . D 4 HOH A 80 2080 2080 HOH HOH . D 4 HOH A 81 2081 2081 HOH HOH . D 4 HOH A 82 2082 2082 HOH HOH . D 4 HOH A 83 2083 2083 HOH HOH . D 4 HOH A 84 2084 2084 HOH HOH . D 4 HOH A 85 2085 2085 HOH HOH . D 4 HOH A 86 2086 2086 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TOP . . . B 2 -5.878 -29.79 5.47 1 15.55 ? C1 TOP 1159 A 1 HETATM 2 N N2 TOP . . . B 2 -6.698 -28.714 5.351 1 19.92 ? N2 TOP 1159 A 1 HETATM 3 C C3 TOP . . . B 2 -6.45 -27.766 4.444 1 13.15 ? C3 TOP 1159 A 1 HETATM 4 N N4 TOP . . . B 2 -7.266 -26.725 4.343 1 18.85 ? N4 TOP 1159 A 1 HETATM 5 N N5 TOP . . . B 2 -5.392 -27.831 3.617 1 14.3 ? N5 TOP 1159 A 1 HETATM 6 C C6 TOP . . . B 2 -4.53 -28.849 3.703 1 13.61 ? C6 TOP 1159 A 1 HETATM 7 N N7 TOP . . . B 2 -3.437 -28.909 2.941 1 16.26 ? N7 TOP 1159 A 1 HETATM 8 C C8 TOP . . . B 2 -4.789 -29.935 4.662 1 18.57 ? C8 TOP 1159 A 1 HETATM 9 C C9 TOP . . . B 2 -3.775 -31.09 4.707 1 22.86 ? C9 TOP 1159 A 1 HETATM 10 C C10 TOP . . . B 2 -4.192 -32.245 5.608 1 24.1 ? C10 TOP 1159 A 1 HETATM 11 C C11 TOP . . . B 2 -3.42 -32.565 6.722 1 17.74 ? C11 TOP 1159 A 1 HETATM 12 C C12 TOP . . . B 2 -3.826 -33.644 7.54 1 23.5 ? C12 TOP 1159 A 1 HETATM 13 O O13 TOP . . . B 2 -3.126 -33.979 8.682 1 21.71 ? O13 TOP 1159 A 1 HETATM 14 C C14 TOP . . . B 2 -1.878 -33.322 8.977 1 19.2 ? C14 TOP 1159 A 1 HETATM 15 C C15 TOP . . . B 2 -4.936 -34.412 7.203 1 27.88 ? C15 TOP 1159 A 1 HETATM 16 O O16 TOP . . . B 2 -5.316 -35.449 8.035 1 20.03 ? O16 TOP 1159 A 1 HETATM 17 C C17 TOP . . . B 2 -6.365 -35.203 8.921 1 17.96 ? C17 TOP 1159 A 1 HETATM 18 C C18 TOP . . . B 2 -5.689 -34.102 6.078 1 31.8 ? C18 TOP 1159 A 1 HETATM 19 O O19 TOP . . . B 2 -6.815 -34.841 5.751 1 29.04 ? O19 TOP 1159 A 1 HETATM 20 C C20 TOP . . . B 2 -7.209 -34.851 4.366 1 34.24 ? C20 TOP 1159 A 1 HETATM 21 C C21 TOP . . . B 2 -5.304 -33.02 5.274 1 22.03 ? C21 TOP 1159 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 21 #