data_2W9S # _model_server_result.job_id FYS_T96ySQDvzgFVk6MrVw _model_server_result.datetime_utc '2024-11-24 03:42:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2w9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1158}' # _entry.id 2W9S # _exptl.entry_id 2W9S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 120 _cell.angle_gamma 90 _cell.entry_id 2W9S _cell.length_a 115.242 _cell.length_b 67.375 _cell.length_c 115.249 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W9S _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,H,I,V 1 1 B,J,K,L,W 2 1 C,M,N,O,X 3 1 D,P,Y 4 1 E,Q,R,S,Z 5 1 F,T,U,AA 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 J N N ? 2 M N N ? 2 Q N N ? 2 R N N ? 2 T N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 2W9S _atom_sites.fract_transf_matrix[1][1] 0.008677 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00501 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014842 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010019 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GOL A 1 1158 1158 GOL GOL . H 3 NDP A 1 1159 1159 NDP NDP . I 4 TOP A 1 1160 1160 TOP TOP . J 2 GOL B 1 1158 1158 GOL GOL . K 3 NDP B 1 1159 1159 NDP NDP . L 4 TOP B 1 1160 1160 TOP TOP . M 2 GOL C 1 1158 1158 GOL GOL . N 3 NDP C 1 1159 1159 NDP NDP . O 4 TOP C 1 1160 1160 TOP TOP . P 4 TOP D 1 1158 1158 TOP TOP . Q 2 GOL E 1 1158 1158 GOL GOL . R 2 GOL E 1 1159 1159 GOL GOL . S 4 TOP E 1 1160 1160 TOP TOP . T 2 GOL F 1 1158 1158 GOL GOL . U 4 TOP F 1 1159 1159 TOP TOP . V 5 HOH A 1 2001 2001 HOH HOH . V 5 HOH A 2 2002 2002 HOH HOH . V 5 HOH A 3 2003 2003 HOH HOH . V 5 HOH A 4 2004 2004 HOH HOH . V 5 HOH A 5 2005 2005 HOH HOH . V 5 HOH A 6 2006 2006 HOH HOH . V 5 HOH A 7 2007 2007 HOH HOH . V 5 HOH A 8 2008 2008 HOH HOH . V 5 HOH A 9 2009 2009 HOH HOH . V 5 HOH A 10 2010 2010 HOH HOH . V 5 HOH A 11 2011 2011 HOH HOH . V 5 HOH A 12 2012 2012 HOH HOH . V 5 HOH A 13 2013 2013 HOH HOH . V 5 HOH A 14 2014 2014 HOH HOH . V 5 HOH A 15 2015 2015 HOH HOH . V 5 HOH A 16 2016 2016 HOH HOH . V 5 HOH A 17 2017 2017 HOH HOH . V 5 HOH A 18 2018 2018 HOH HOH . V 5 HOH A 19 2019 2019 HOH HOH . V 5 HOH A 20 2020 2020 HOH HOH . V 5 HOH A 21 2021 2021 HOH HOH . V 5 HOH A 22 2022 2022 HOH HOH . V 5 HOH A 23 2023 2023 HOH HOH . V 5 HOH A 24 2024 2024 HOH HOH . V 5 HOH A 25 2025 2025 HOH HOH . V 5 HOH A 26 2026 2026 HOH HOH . V 5 HOH A 27 2027 2027 HOH HOH . V 5 HOH A 28 2028 2028 HOH HOH . V 5 HOH A 29 2029 2029 HOH HOH . V 5 HOH A 30 2030 2030 HOH HOH . V 5 HOH A 31 2031 2031 HOH HOH . V 5 HOH A 32 2032 2032 HOH HOH . V 5 HOH A 33 2033 2033 HOH HOH . V 5 HOH A 34 2034 2034 HOH HOH . V 5 HOH A 35 2035 2035 HOH HOH . V 5 HOH A 36 2036 2036 HOH HOH . V 5 HOH A 37 2037 2037 HOH HOH . V 5 HOH A 38 2038 2038 HOH HOH . V 5 HOH A 39 2039 2039 HOH HOH . V 5 HOH A 40 2040 2040 HOH HOH . V 5 HOH A 41 2041 2041 HOH HOH . W 5 HOH B 1 2001 2001 HOH HOH . W 5 HOH B 2 2002 2002 HOH HOH . W 5 HOH B 3 2003 2003 HOH HOH . W 5 HOH B 4 2004 2004 HOH HOH . W 5 HOH B 5 2005 2005 HOH HOH . W 5 HOH B 6 2006 2006 HOH HOH . W 5 HOH B 7 2007 2007 HOH HOH . W 5 HOH B 8 2008 2008 HOH HOH . W 5 HOH B 9 2009 2009 HOH HOH . W 5 HOH B 10 2010 2010 HOH HOH . W 5 HOH B 11 2011 2011 HOH HOH . W 5 HOH B 12 2012 2012 HOH HOH . W 5 HOH B 13 2013 2013 HOH HOH . W 5 HOH B 14 2014 2014 HOH HOH . W 5 HOH B 15 2015 2015 HOH HOH . W 5 HOH B 16 2016 2016 HOH HOH . W 5 HOH B 17 2017 2017 HOH HOH . W 5 HOH B 18 2018 2018 HOH HOH . W 5 HOH B 19 2019 2019 HOH HOH . W 5 HOH B 20 2020 2020 HOH HOH . W 5 HOH B 21 2021 2021 HOH HOH . W 5 HOH B 22 2022 2022 HOH HOH . W 5 HOH B 23 2023 2023 HOH HOH . W 5 HOH B 24 2024 2024 HOH HOH . W 5 HOH B 25 2025 2025 HOH HOH . W 5 HOH B 26 2026 2026 HOH HOH . W 5 HOH B 27 2027 2027 HOH HOH . W 5 HOH B 28 2028 2028 HOH HOH . W 5 HOH B 29 2029 2029 HOH HOH . W 5 HOH B 30 2030 2030 HOH HOH . W 5 HOH B 31 2031 2031 HOH HOH . W 5 HOH B 32 2032 2032 HOH HOH . W 5 HOH B 33 2033 2033 HOH HOH . W 5 HOH B 34 2034 2034 HOH HOH . W 5 HOH B 35 2035 2035 HOH HOH . W 5 HOH B 36 2036 2036 HOH HOH . W 5 HOH B 37 2037 2037 HOH HOH . W 5 HOH B 38 2038 2038 HOH HOH . W 5 HOH B 39 2039 2039 HOH HOH . W 5 HOH B 40 2040 2040 HOH HOH . W 5 HOH B 41 2041 2041 HOH HOH . W 5 HOH B 42 2042 2042 HOH HOH . W 5 HOH B 43 2043 2043 HOH HOH . W 5 HOH B 44 2044 2044 HOH HOH . W 5 HOH B 45 2045 2045 HOH HOH . W 5 HOH B 46 2046 2046 HOH HOH . W 5 HOH B 47 2047 2047 HOH HOH . X 5 HOH C 1 2001 2001 HOH HOH . X 5 HOH C 2 2002 2002 HOH HOH . X 5 HOH C 3 2003 2003 HOH HOH . X 5 HOH C 4 2004 2004 HOH HOH . X 5 HOH C 5 2005 2005 HOH HOH . X 5 HOH C 6 2006 2006 HOH HOH . X 5 HOH C 7 2007 2007 HOH HOH . X 5 HOH C 8 2008 2008 HOH HOH . X 5 HOH C 9 2009 2009 HOH HOH . X 5 HOH C 10 2010 2010 HOH HOH . X 5 HOH C 11 2011 2011 HOH HOH . X 5 HOH C 12 2012 2012 HOH HOH . X 5 HOH C 13 2013 2013 HOH HOH . X 5 HOH C 14 2014 2014 HOH HOH . X 5 HOH C 15 2015 2015 HOH HOH . X 5 HOH C 16 2016 2016 HOH HOH . X 5 HOH C 17 2017 2017 HOH HOH . X 5 HOH C 18 2018 2018 HOH HOH . X 5 HOH C 19 2019 2019 HOH HOH . X 5 HOH C 20 2020 2020 HOH HOH . X 5 HOH C 21 2021 2021 HOH HOH . X 5 HOH C 22 2022 2022 HOH HOH . X 5 HOH C 23 2023 2023 HOH HOH . X 5 HOH C 24 2024 2024 HOH HOH . X 5 HOH C 25 2025 2025 HOH HOH . X 5 HOH C 26 2026 2026 HOH HOH . X 5 HOH C 27 2027 2027 HOH HOH . X 5 HOH C 28 2028 2028 HOH HOH . X 5 HOH C 29 2029 2029 HOH HOH . X 5 HOH C 30 2030 2030 HOH HOH . X 5 HOH C 31 2031 2031 HOH HOH . X 5 HOH C 32 2032 2032 HOH HOH . X 5 HOH C 33 2033 2033 HOH HOH . X 5 HOH C 34 2034 2034 HOH HOH . X 5 HOH C 35 2035 2035 HOH HOH . X 5 HOH C 36 2036 2036 HOH HOH . X 5 HOH C 37 2037 2037 HOH HOH . X 5 HOH C 38 2038 2038 HOH HOH . X 5 HOH C 39 2039 2039 HOH HOH . X 5 HOH C 40 2040 2040 HOH HOH . X 5 HOH C 41 2041 2041 HOH HOH . X 5 HOH C 42 2042 2042 HOH HOH . X 5 HOH C 43 2043 2043 HOH HOH . X 5 HOH C 44 2044 2044 HOH HOH . X 5 HOH C 45 2045 2045 HOH HOH . X 5 HOH C 46 2046 2046 HOH HOH . Y 5 HOH D 1 2001 2001 HOH HOH . Y 5 HOH D 2 2002 2002 HOH HOH . Y 5 HOH D 3 2003 2003 HOH HOH . Y 5 HOH D 4 2004 2004 HOH HOH . Y 5 HOH D 5 2005 2005 HOH HOH . Y 5 HOH D 6 2006 2006 HOH HOH . Y 5 HOH D 7 2007 2007 HOH HOH . Y 5 HOH D 8 2008 2008 HOH HOH . Y 5 HOH D 9 2009 2009 HOH HOH . Y 5 HOH D 10 2010 2010 HOH HOH . Y 5 HOH D 11 2011 2011 HOH HOH . Y 5 HOH D 12 2012 2012 HOH HOH . Y 5 HOH D 13 2013 2013 HOH HOH . Y 5 HOH D 14 2014 2014 HOH HOH . Y 5 HOH D 15 2015 2015 HOH HOH . Y 5 HOH D 16 2016 2016 HOH HOH . Y 5 HOH D 17 2017 2017 HOH HOH . Y 5 HOH D 18 2018 2018 HOH HOH . Y 5 HOH D 19 2019 2019 HOH HOH . Y 5 HOH D 20 2020 2020 HOH HOH . Y 5 HOH D 21 2021 2021 HOH HOH . Y 5 HOH D 22 2022 2022 HOH HOH . Y 5 HOH D 23 2023 2023 HOH HOH . Y 5 HOH D 24 2024 2024 HOH HOH . Y 5 HOH D 25 2025 2025 HOH HOH . Y 5 HOH D 26 2026 2026 HOH HOH . Y 5 HOH D 27 2027 2027 HOH HOH . Y 5 HOH D 28 2028 2028 HOH HOH . Y 5 HOH D 29 2029 2029 HOH HOH . Y 5 HOH D 30 2030 2030 HOH HOH . Y 5 HOH D 31 2031 2031 HOH HOH . Y 5 HOH D 32 2032 2032 HOH HOH . Y 5 HOH D 33 2033 2033 HOH HOH . Y 5 HOH D 34 2034 2034 HOH HOH . Y 5 HOH D 35 2035 2035 HOH HOH . Y 5 HOH D 36 2036 2036 HOH HOH . Z 5 HOH E 1 2001 2001 HOH HOH . Z 5 HOH E 2 2002 2002 HOH HOH . Z 5 HOH E 3 2003 2003 HOH HOH . Z 5 HOH E 4 2004 2004 HOH HOH . Z 5 HOH E 5 2005 2005 HOH HOH . Z 5 HOH E 6 2006 2006 HOH HOH . Z 5 HOH E 7 2007 2007 HOH HOH . Z 5 HOH E 8 2008 2008 HOH HOH . Z 5 HOH E 9 2009 2009 HOH HOH . Z 5 HOH E 10 2010 2010 HOH HOH . Z 5 HOH E 11 2011 2011 HOH HOH . Z 5 HOH E 12 2012 2012 HOH HOH . Z 5 HOH E 13 2013 2013 HOH HOH . Z 5 HOH E 14 2014 2014 HOH HOH . Z 5 HOH E 15 2015 2015 HOH HOH . Z 5 HOH E 16 2016 2016 HOH HOH . Z 5 HOH E 17 2017 2017 HOH HOH . Z 5 HOH E 18 2018 2018 HOH HOH . Z 5 HOH E 19 2019 2019 HOH HOH . Z 5 HOH E 20 2020 2020 HOH HOH . Z 5 HOH E 21 2021 2021 HOH HOH . Z 5 HOH E 22 2022 2022 HOH HOH . Z 5 HOH E 23 2023 2023 HOH HOH . Z 5 HOH E 24 2024 2024 HOH HOH . Z 5 HOH E 25 2025 2025 HOH HOH . Z 5 HOH E 26 2026 2026 HOH HOH . Z 5 HOH E 27 2027 2027 HOH HOH . Z 5 HOH E 28 2028 2028 HOH HOH . Z 5 HOH E 29 2029 2029 HOH HOH . Z 5 HOH E 30 2030 2030 HOH HOH . Z 5 HOH E 31 2031 2031 HOH HOH . Z 5 HOH E 32 2032 2032 HOH HOH . Z 5 HOH E 33 2033 2033 HOH HOH . Z 5 HOH E 34 2034 2034 HOH HOH . Z 5 HOH E 35 2035 2035 HOH HOH . Z 5 HOH E 36 2036 2036 HOH HOH . AA 5 HOH F 1 2001 2001 HOH HOH . AA 5 HOH F 2 2002 2002 HOH HOH . AA 5 HOH F 3 2003 2003 HOH HOH . AA 5 HOH F 4 2004 2004 HOH HOH . AA 5 HOH F 5 2005 2005 HOH HOH . AA 5 HOH F 6 2006 2006 HOH HOH . AA 5 HOH F 7 2007 2007 HOH HOH . AA 5 HOH F 8 2008 2008 HOH HOH . AA 5 HOH F 9 2009 2009 HOH HOH . AA 5 HOH F 10 2010 2010 HOH HOH . AA 5 HOH F 11 2011 2011 HOH HOH . AA 5 HOH F 12 2012 2012 HOH HOH . AA 5 HOH F 13 2013 2013 HOH HOH . AA 5 HOH F 14 2014 2014 HOH HOH . AA 5 HOH F 15 2015 2015 HOH HOH . AA 5 HOH F 16 2016 2016 HOH HOH . AA 5 HOH F 17 2017 2017 HOH HOH . AA 5 HOH F 18 2018 2018 HOH HOH . AA 5 HOH F 19 2019 2019 HOH HOH . AA 5 HOH F 20 2020 2020 HOH HOH . AA 5 HOH F 21 2021 2021 HOH HOH . AA 5 HOH F 22 2022 2022 HOH HOH . AA 5 HOH F 23 2023 2023 HOH HOH . AA 5 HOH F 24 2024 2024 HOH HOH . AA 5 HOH F 25 2025 2025 HOH HOH . AA 5 HOH F 26 2026 2026 HOH HOH . AA 5 HOH F 27 2027 2027 HOH HOH . AA 5 HOH F 28 2028 2028 HOH HOH . AA 5 HOH F 29 2029 2029 HOH HOH . AA 5 HOH F 30 2030 2030 HOH HOH . AA 5 HOH F 31 2031 2031 HOH HOH . AA 5 HOH F 32 2032 2032 HOH HOH . AA 5 HOH F 33 2033 2033 HOH HOH . AA 5 HOH F 34 2034 2034 HOH HOH . AA 5 HOH F 35 2035 2035 HOH HOH . AA 5 HOH F 36 2036 2036 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . M 2 7.247 -34.422 10.155 1 47.46 ? C1 GOL 1158 C 1 HETATM 2 O O1 GOL . . . M 2 5.888 -34.49 9.777 1 36.03 ? O1 GOL 1158 C 1 HETATM 3 C C2 GOL . . . M 2 7.89 -33.39 9.254 1 44.58 ? C2 GOL 1158 C 1 HETATM 4 O O2 GOL . . . M 2 6.914 -32.947 8.337 1 48.88 ? O2 GOL 1158 C 1 HETATM 5 C C3 GOL . . . M 2 9.142 -33.941 8.569 1 48.15 ? C3 GOL 1158 C 1 HETATM 6 O O3 GOL . . . M 2 10.011 -34.43 9.578 1 46.11 ? O3 GOL 1158 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #