data_2WAP
#
_model_server_result.job_id            P1k5L-1CJ2cV7uTCatNlrQ 
_model_server_result.datetime_utc      '2025-01-11 09:43:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2wap 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1574}' 
#
_entry.id    2WAP 
#
_exptl.entry_id    2WAP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              380.361 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-(3-{[5-(trifluoromethyl)pyridin-2-yl]oxy}benzyl)piperidine-1-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2WAP 
_cell.length_a            102.77 
_cell.length_b            105.2 
_cell.length_c            148.03 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2WAP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 211 A SER 241 1_555 C C8 PIX . A PIX 1574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? 
covale ? covale2 B OG SER 211 B SER 241 1_555 F C8 PIX . B PIX 1574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
#
_chem_comp.formula           'C19 H19 F3 N2 O3' 
_chem_comp.formula_weight    380.361 
_chem_comp.id                PIX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-(3-{[5-(trifluoromethyl)pyridin-2-yl]oxy}benzyl)piperidine-1-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O9 C8 PIX doub 260 n n 
C8 N3 PIX sing 261 n n 
C8 OXT PIX sing 262 n n 
N3 C2 PIX sing 263 n n 
N3 C4 PIX sing 264 n n 
C2 C1 PIX sing 265 n n 
C1 C6 PIX sing 266 n n 
C4 C5 PIX sing 267 n n 
C5 C6 PIX sing 268 n n 
C6 C7 PIX sing 269 n n 
C7 C12 PIX sing 270 n n 
C12 C13 PIX sing 271 n y 
C12 C17 PIX doub 272 n y 
C13 C14 PIX doub 273 n y 
C14 C15 PIX sing 274 n y 
C15 C16 PIX doub 275 n y 
C17 C16 PIX sing 276 n y 
C16 O18 PIX sing 277 n n 
O18 C19 PIX sing 278 n n 
C19 C20 PIX sing 279 n y 
C19 N24 PIX doub 280 n y 
C20 C21 PIX doub 281 n y 
C21 C24 PIX sing 282 n y 
N24 C23 PIX sing 283 n y 
C23 C24 PIX doub 284 n y 
C24 C25 PIX sing 285 n n 
C25 F28 PIX sing 286 n n 
C25 F26 PIX sing 287 n n 
C25 F27 PIX sing 288 n n 
OXT HOT PIX sing 289 n n 
C2 H21C PIX sing 290 n n 
C2 H22C PIX sing 291 n n 
C4 H41C PIX sing 292 n n 
C4 H42C PIX sing 293 n n 
C1 H11C PIX sing 294 n n 
C1 H12C PIX sing 295 n n 
C6 H6 PIX sing 296 n n 
C5 H51C PIX sing 297 n n 
C5 H52C PIX sing 298 n n 
C7 H71C PIX sing 299 n n 
C7 H72C PIX sing 300 n n 
C13 H13 PIX sing 301 n n 
C17 H17 PIX sing 302 n n 
C14 H14 PIX sing 303 n n 
C15 H15 PIX sing 304 n n 
C20 H20 PIX sing 305 n n 
C21 H21 PIX sing 306 n n 
C23 H23 PIX sing 307 n n 
#
_atom_sites.entry_id                     2WAP 
_atom_sites.fract_transf_matrix[1][1]    0.00973 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009506 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006755 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PIX A 1 1574 1574 PIX PIX . 
D 3 CL A 1 1575 1575 CL CL . 
E 4 NA A 1 1576 1576 NA NA . 
F 2 PIX B 1 1574 1574 PIX PIX . 
G 4 NA B 1 1575 1575 NA NA . 
H 4 NA B 1 1576 1576 NA NA . 
I 5 HOH A 1 2001 2001 HOH HOH . 
I 5 HOH A 2 2002 2002 HOH HOH . 
I 5 HOH A 3 2003 2003 HOH HOH . 
I 5 HOH A 4 2004 2004 HOH HOH . 
I 5 HOH A 5 2005 2005 HOH HOH . 
I 5 HOH A 6 2006 2006 HOH HOH . 
I 5 HOH A 7 2007 2007 HOH HOH . 
I 5 HOH A 8 2008 2008 HOH HOH . 
I 5 HOH A 9 2009 2009 HOH HOH . 
I 5 HOH A 10 2010 2010 HOH HOH . 
I 5 HOH A 11 2011 2011 HOH HOH . 
I 5 HOH A 12 2012 2012 HOH HOH . 
I 5 HOH A 13 2013 2013 HOH HOH . 
I 5 HOH A 14 2014 2014 HOH HOH . 
I 5 HOH A 15 2015 2015 HOH HOH . 
I 5 HOH A 16 2016 2016 HOH HOH . 
I 5 HOH A 17 2017 2017 HOH HOH . 
I 5 HOH A 18 2018 2018 HOH HOH . 
J 5 HOH B 1 2001 2001 HOH HOH . 
J 5 HOH B 2 2002 2002 HOH HOH . 
J 5 HOH B 3 2003 2003 HOH HOH . 
J 5 HOH B 4 2004 2004 HOH HOH . 
J 5 HOH B 5 2005 2005 HOH HOH . 
J 5 HOH B 6 2006 2006 HOH HOH . 
J 5 HOH B 7 2007 2007 HOH HOH . 
J 5 HOH B 8 2008 2008 HOH HOH . 
J 5 HOH B 9 2009 2009 HOH HOH . 
J 5 HOH B 10 2010 2010 HOH HOH . 
J 5 HOH B 11 2011 2011 HOH HOH . 
J 5 HOH B 12 2012 2012 HOH HOH . 
J 5 HOH B 13 2013 2013 HOH HOH . 
J 5 HOH B 14 2014 2014 HOH HOH . 
J 5 HOH B 15 2015 2015 HOH HOH . 
J 5 HOH B 16 2016 2016 HOH HOH . 
J 5 HOH B 17 2017 2017 HOH HOH . 
J 5 HOH B 18 2018 2018 HOH HOH . 
J 5 HOH B 19 2019 2019 HOH HOH . 
J 5 HOH B 20 2020 2020 HOH HOH . 
J 5 HOH B 21 2021 2021 HOH HOH . 
J 5 HOH B 22 2022 2022 HOH HOH . 
J 5 HOH B 23 2023 2023 HOH HOH . 
J 5 HOH B 24 2024 2024 HOH HOH . 
J 5 HOH B 25 2025 2025 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O9 PIX . . . C 2 -12.572 -11.421 -4.634 1 33.74 ? O9 PIX 1574 A 1 
HETATM 2 C C8 PIX . . . C 2 -13.516 -11.203 -3.877 1 32.44 ? C8 PIX 1574 A 1 
HETATM 3 N N3 PIX . . . C 2 -14.679 -10.695 -4.277 1 32.35 ? N3 PIX 1574 A 1 
HETATM 4 C C2 PIX . . . C 2 -15.749 -10.47 -3.297 1 32.83 ? C2 PIX 1574 A 1 
HETATM 5 C C1 PIX . . . C 2 -16.376 -9.094 -3.545 1 32.05 ? C1 PIX 1574 A 1 
HETATM 6 C C4 PIX . . . C 2 -14.906 -10.393 -5.689 1 31.03 ? C4 PIX 1574 A 1 
HETATM 7 C C5 PIX . . . C 2 -15.567 -9.036 -5.837 1 31.27 ? C5 PIX 1574 A 1 
HETATM 8 C C6 PIX . . . C 2 -16.808 -8.881 -4.979 1 30.83 ? C6 PIX 1574 A 1 
HETATM 9 C C7 PIX . . . C 2 -17.37 -7.466 -5.087 1 30.62 ? C7 PIX 1574 A 1 
HETATM 10 C C12 PIX . . . C 2 -18.084 -7.25 -6.394 1 29.6 ? C12 PIX 1574 A 1 
HETATM 11 C C13 PIX . . . C 2 -19.439 -7.493 -6.498 1 29.65 ? C13 PIX 1574 A 1 
HETATM 12 C C14 PIX . . . C 2 -20.098 -7.307 -7.709 1 30.46 ? C14 PIX 1574 A 1 
HETATM 13 C C15 PIX . . . C 2 -19.395 -6.866 -8.819 1 30.42 ? C15 PIX 1574 A 1 
HETATM 14 C C17 PIX . . . C 2 -17.382 -6.803 -7.493 1 30.14 ? C17 PIX 1574 A 1 
HETATM 15 C C16 PIX . . . C 2 -18.035 -6.629 -8.697 1 30.71 ? C16 PIX 1574 A 1 
HETATM 16 O O18 PIX . . . C 2 -17.328 -6.189 -9.76 1 32.25 ? O18 PIX 1574 A 1 
HETATM 17 C C19 PIX . . . C 2 -17.189 -4.844 -9.922 1 34.37 ? C19 PIX 1574 A 1 
HETATM 18 C C20 PIX . . . C 2 -17.913 -3.959 -9.122 1 34.05 ? C20 PIX 1574 A 1 
HETATM 19 C C21 PIX . . . C 2 -17.744 -2.597 -9.304 1 34.59 ? C21 PIX 1574 A 1 
HETATM 20 N N24 PIX . . . C 2 -16.329 -4.388 -10.871 1 35.11 ? N24 PIX 1574 A 1 
HETATM 21 C C23 PIX . . . C 2 -16.16 -3.068 -11.059 1 35.67 ? C23 PIX 1574 A 1 
HETATM 22 C C24 PIX . . . C 2 -16.867 -2.137 -10.284 1 35.1 ? C24 PIX 1574 A 1 
HETATM 23 C C25 PIX . . . C 2 -16.669 -0.659 -10.49 1 34.98 ? C25 PIX 1574 A 1 
HETATM 24 F F28 PIX . . . C 2 -16.34 -0.387 -11.732 1 35.57 ? F28 PIX 1574 A 1 
HETATM 25 F F26 PIX . . . C 2 -17.768 0.012 -10.199 1 34.69 ? F26 PIX 1574 A 1 
HETATM 26 F F27 PIX . . . C 2 -15.677 -0.257 -9.721 1 36.7 ? F27 PIX 1574 A 1 
#
_model_server_stats.io_time_ms              119 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           26 
#