data_2WAQ # _model_server_result.job_id jPZOtbC7ZF9UzxMGlh3tTQ _model_server_result.datetime_utc '2024-12-17 23:41:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2waq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":1001}' # _entry.id 2WAQ # _exptl.entry_id 2WAQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 295.795 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE3-S4 CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2WAQ _cell.length_a 193.501 _cell.length_b 212.62 _cell.length_c 128.998 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WAQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tridecameric _pdbx_struct_assembly.oligomeric_count 13 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 16 _struct_asym.id V _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 98 A CYS 98 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 575 A CYS 575 1_555 A SG CYS 580 A CYS 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 D SG CYS 82 D CYS 82 1_555 D SG CYS 92 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 D SG CYS 85 D CYS 85 1_555 D SG CYS 89 D CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 D SG CYS 176 D CYS 176 1_555 D SG CYS 213 D CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 G SG CYS 13 G CYS 13 1_555 G SG CYS 33 G CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 K SG CYS 10 N CYS 10 1_555 K SG CYS 45 N CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf8 L SG CYS 26 P CYS 26 1_555 L SG CYS 29 P CYS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A SG CYS 58 A CYS 58 1_555 N ZN ZN . A ZN 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc2 A SG CYS 68 A CYS 68 1_555 N ZN ZN . A ZN 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc3 A NE2 HIS 71 A HIS 71 1_555 N ZN ZN . A ZN 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc4 A SG CYS 98 A CYS 98 1_555 O ZN ZN . A ZN 1350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc5 A OD1 ASP 456 A ASP 456 1_555 Q MG MG . A MG 1400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc6 A OD1 ASP 458 A ASP 458 1_555 Q MG MG . A MG 1400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc7 A OD1 ASP 460 A ASP 460 1_555 Q MG MG . A MG 1400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc8 P ZN ZN . A ZN 1360 1_555 C OE2 GLU 80 C GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc9 B ND1 HIS 570 B HIS 570 1_555 S ZN ZN . B ZN 1400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc10 B SG CYS 1064 B CYS 1064 1_555 R ZN ZN . B ZN 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc11 B SG CYS 1067 B CYS 1067 1_555 R ZN ZN . B ZN 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc12 C NE2 HIS 353 C HIS 353 1_555 U ZN ZN . C ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc13 D SG CYS 203 D CYS 203 1_555 V FE3 F3S . D F3S 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc14 D SG CYS 206 D CYS 206 1_555 V FE4 F3S . D F3S 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc15 D SG CYS 209 D CYS 209 1_555 V FE1 F3S . D F3S 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc16 K SG CYS 7 N CYS 7 1_555 W ZN ZN . N ZN 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc17 K SG CYS 10 N CYS 10 1_555 W ZN ZN . N ZN 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc18 K SG CYS 45 N CYS 45 1_555 W ZN ZN . N ZN 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc19 L SG CYS 9 P CYS 9 1_555 X ZN ZN . P ZN 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc20 L OG1 THR 12 P THR 12 1_555 X ZN ZN . P ZN 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc21 L SG CYS 29 P CYS 29 1_555 X ZN ZN . P ZN 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.631 ? # _chem_comp.formula 'Fe3 S4' _chem_comp.formula_weight 295.795 _chem_comp.id F3S _chem_comp.mon_nstd_flag . _chem_comp.name 'FE3-S4 CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 F3S sing 83 n n FE1 S2 F3S sing 84 n n FE1 S3 F3S sing 85 n n FE3 S1 F3S sing 86 n n FE3 S3 F3S sing 87 n n FE3 S4 F3S sing 88 n n FE4 S2 F3S sing 89 n n FE4 S3 F3S sing 90 n n FE4 S4 F3S sing 91 n n # _atom_sites.entry_id 2WAQ _atom_sites.fract_transf_matrix[1][1] 0.005168 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004703 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007752 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code N 14 ZN A 1 1300 1300 ZN ZN . O 14 ZN A 1 1350 1350 ZN ZN . P 14 ZN A 1 1360 1360 ZN ZN . Q 15 MG A 1 1400 1400 MG MG . R 14 ZN B 1 1300 1300 ZN ZN . S 14 ZN B 1 1400 1400 ZN ZN . T 14 ZN B 1 1500 1500 ZN ZN . U 14 ZN C 1 1000 1000 ZN ZN . V 16 F3S D 1 1001 1001 F3S F3S . W 14 ZN N 1 100 100 ZN ZN . X 14 ZN P 1 50 50 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 F3S . . . V 16 24.957 19.32 15.795 1 67.98 ? FE1 F3S 1001 D 1 HETATM 2 FE FE3 F3S . . . V 16 27.283 18.971 14.898 1 67.98 ? FE3 F3S 1001 D 1 HETATM 3 FE FE4 F3S . . . V 16 26.93 20.32 16.991 1 67.98 ? FE4 F3S 1001 D 1 HETATM 4 S S1 F3S . . . V 16 25.635 19.937 13.777 1 67.98 ? S1 F3S 1001 D 1 HETATM 5 S S2 F3S . . . V 16 25.177 21.469 16.271 1 67.98 ? S2 F3S 1001 D 1 HETATM 6 S S3 F3S . . . V 16 26.524 18.269 16.739 1 67.98 ? S3 F3S 1001 D 1 HETATM 7 S S4 F3S . . . V 16 28.05 21.023 15.208 1 67.98 ? S4 F3S 1001 D 1 # _model_server_stats.io_time_ms 81 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 429 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 7 #