data_2WB1 # _model_server_result.job_id mQici6oj9jRCZ0eh-0_RPw _model_server_result.datetime_utc '2025-04-24 04:47:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wb1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":2123}' # _entry.id 2WB1 # _exptl.entry_id 2WB1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2WB1 _cell.length_a 196.095 _cell.length_b 211.871 _cell.length_c 238.905 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WB1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS tridecameric 13 software_defined_assembly 1 PQS tridecameric 13 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,K,L,N,P,Q,AA,BA,CA,DA,EA,FA,HA 1 1 I,J,M,O,R,S,T,U,V,W,X,Y,Z,GA,IA,JA,KA,LA,MA,NA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 AA N N ? 14 BA N N ? 14 DA N N ? 14 FA N N ? 14 GA N N ? 14 HA N N ? 14 IA N N ? 14 KA N N ? 14 LA N N ? 14 NA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 61 A CYS 61 1_555 A SG CYS 68 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? disulf ? disulf2 A SG CYS 98 A CYS 98 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 575 A CYS 575 1_555 A SG CYS 580 A CYS 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 D SG CYS 82 D CYS 82 1_555 D SG CYS 92 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf5 D SG CYS 85 D CYS 85 1_555 D SG CYS 89 D CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 D SG CYS 176 D CYS 176 1_555 D SG CYS 213 D CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 G SG CYS 13 G CYS 13 1_555 G SG CYS 33 G CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 N SG CYS 10 N CYS 10 1_555 N SG CYS 45 N CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf9 O SG CYS 10 O CYS 10 1_555 O SG CYS 45 O CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf10 P SG CYS 26 P CYS 26 1_555 P SG CYS 29 P CYS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf11 S SG CYS 82 S CYS 82 1_555 S SG CYS 92 S CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf12 S SG CYS 85 S CYS 85 1_555 S SG CYS 89 S CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf13 S SG CYS 176 S CYS 176 1_555 S SG CYS 213 S CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf14 V SG CYS 13 V CYS 13 1_555 V SG CYS 33 V CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf15 W SG CYS 61 W CYS 61 1_555 W SG CYS 68 W CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? disulf ? disulf16 W SG CYS 98 W CYS 98 1_555 W SG CYS 101 W CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf17 W SG CYS 575 W CYS 575 1_555 W SG CYS 580 W CYS 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf18 X SG CYS 26 X CYS 26 1_555 X SG CYS 29 X CYS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 A SG CYS 58 A CYS 58 1_555 AA ZN ZN . A ZN 1880 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc2 A N GLN 144 A GLN 144 1_555 BA ZN ZN . A ZN 1881 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc3 A OD1 ASP 456 A ASP 456 1_555 CA MG MG . A MG 1882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc4 A OD1 ASP 458 A ASP 458 1_555 CA MG MG . A MG 1882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc5 A OD1 ASP 460 A ASP 460 1_555 CA MG MG . A MG 1882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc6 B SG CYS 1067 B CYS 1067 1_555 DA ZN ZN . B ZN 2123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc7 D SG CYS 203 D CYS 203 1_555 EA FE3 F3S . D F3S 1265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc8 D SG CYS 206 D CYS 206 1_555 EA FE4 F3S . D F3S 1265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc9 D SG CYS 209 D CYS 209 1_555 EA FE1 F3S . D F3S 1265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc10 N SG CYS 7 N CYS 7 1_555 FA ZN ZN . N ZN 1065 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc11 N N CYS 45 N CYS 45 1_555 FA ZN ZN . N ZN 1065 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc12 O SG CYS 7 O CYS 7 1_555 GA ZN ZN . O ZN 1065 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc13 O SG CYS 10 O CYS 10 1_555 GA ZN ZN . O ZN 1065 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc14 O N CYS 45 O CYS 45 1_555 GA ZN ZN . O ZN 1065 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc15 O SG CYS 45 O CYS 45 1_555 GA ZN ZN . O ZN 1065 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc16 P SG CYS 26 P CYS 26 1_555 HA ZN ZN . P ZN 1049 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc17 S SG CYS 203 S CYS 203 1_555 JA FE3 F3S . S F3S 1265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc18 S SG CYS 206 S CYS 206 1_555 JA FE4 F3S . S F3S 1265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc19 S SG CYS 209 S CYS 209 1_555 JA FE1 F3S . S F3S 1265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc20 W O CYS 68 W CYS 68 1_555 KA ZN ZN . W ZN 1880 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc21 W NE2 HIS 71 W HIS 71 1_555 KA ZN ZN . W ZN 1880 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.65 ? metalc ? metalc22 W OD1 ASP 456 W ASP 456 1_555 MA MG MG . W MG 1882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc23 W OD1 ASP 458 W ASP 458 1_555 MA MG MG . W MG 1882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? metalc ? metalc24 W OD1 ASP 460 W ASP 460 1_555 MA MG MG . W MG 1882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc25 X OG1 THR 12 X THR 12 1_555 NA ZN ZN . X ZN 1049 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc26 X SG CYS 29 X CYS 29 1_555 NA ZN ZN . X ZN 1049 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.709 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2WB1 _atom_sites.fract_transf_matrix[1][1] 0.0051 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code AA 14 ZN A 1 1880 1880 ZN ZN . BA 14 ZN A 1 1881 1881 ZN ZN . CA 15 MG A 1 1882 1882 MG MG . DA 14 ZN B 1 2123 2123 ZN ZN . EA 16 F3S D 1 1265 1265 F3S F3S . FA 14 ZN N 1 1065 1065 ZN ZN . GA 14 ZN O 1 1065 1065 ZN ZN . HA 14 ZN P 1 1049 1049 ZN ZN . IA 14 ZN R 1 2123 2123 ZN ZN . JA 16 F3S S 1 1265 1265 F3S F3S . KA 14 ZN W 1 1880 1880 ZN ZN . LA 14 ZN W 1 1881 1881 ZN ZN . MA 15 MG W 1 1882 1882 MG MG . NA 14 ZN X 1 1049 1049 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id DA _atom_site.label_entity_id 14 _atom_site.Cartn_x -21.839 _atom_site.Cartn_y 23.209 _atom_site.Cartn_z 96.595 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 75.87 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 2123 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 118 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 82 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #