data_2WBI
#
_model_server_result.job_id            IoRuy4Q9O78uoq6H1_x0OQ 
_model_server_result.datetime_utc      '2024-11-05 00:34:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2wbi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":600}' 
#
_entry.id    2WBI 
#
_exptl.entry_id    2WBI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2WBI 
_cell.length_a            128.089 
_cell.length_b            128.089 
_cell.length_c            129.91 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2WBI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 43.303333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 J N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     2WBI 
_atom_sites.fract_transf_matrix[1][1]    0.007807 
_atom_sites.fract_transf_matrix[1][2]    0.004507 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009015 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007698 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 600 600 FAD FAD . 
D 3 PO4 A 1 1427 1427 PO4 PO4 . 
E 4 UNX A 1 1428 1428 UNX UNX . 
F 4 UNX A 1 1429 1429 UNX UNX . 
G 4 UNX A 1 1430 1430 UNX UNX . 
H 4 UNX A 1 1431 1431 UNX UNX . 
I 4 UNX A 1 1432 1432 UNX UNX . 
J 2 FAD B 1 600 600 FAD FAD . 
K 3 PO4 B 1 1426 1426 PO4 PO4 . 
L 4 UNX B 1 1427 1427 UNX UNX . 
M 4 UNX B 1 1428 1428 UNX UNX . 
N 4 UNX B 1 1429 1429 UNX UNX . 
O 4 UNX B 1 1430 1430 UNX UNX . 
P 4 UNX B 1 1431 1431 UNX UNX . 
Q 4 UNX B 1 1432 1432 UNX UNX . 
R 4 UNX B 1 1433 1433 UNX UNX . 
S 4 UNX B 1 1434 1434 UNX UNX . 
T 4 UNX B 1 1435 1435 UNX UNX . 
U 5 HOH A 1 2001 2001 HOH HOH . 
U 5 HOH A 2 2002 2002 HOH HOH . 
U 5 HOH A 3 2003 2003 HOH HOH . 
U 5 HOH A 4 2004 2004 HOH HOH . 
U 5 HOH A 5 2005 2005 HOH HOH . 
U 5 HOH A 6 2006 2006 HOH HOH . 
U 5 HOH A 7 2007 2007 HOH HOH . 
U 5 HOH A 8 2008 2008 HOH HOH . 
U 5 HOH A 9 2009 2009 HOH HOH . 
U 5 HOH A 10 2010 2010 HOH HOH . 
U 5 HOH A 11 2011 2011 HOH HOH . 
U 5 HOH A 12 2012 2012 HOH HOH . 
U 5 HOH A 13 2013 2013 HOH HOH . 
U 5 HOH A 14 2014 2014 HOH HOH . 
U 5 HOH A 15 2015 2015 HOH HOH . 
V 5 HOH B 1 2001 2001 HOH HOH . 
V 5 HOH B 2 2002 2002 HOH HOH . 
V 5 HOH B 3 2003 2003 HOH HOH . 
V 5 HOH B 4 2004 2004 HOH HOH . 
V 5 HOH B 5 2005 2005 HOH HOH . 
V 5 HOH B 6 2006 2006 HOH HOH . 
V 5 HOH B 7 2007 2007 HOH HOH . 
V 5 HOH B 8 2008 2008 HOH HOH . 
V 5 HOH B 9 2009 2009 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . J 2 22.832 -16.666 10.692 1 52.47 ? PA FAD 600 B 1 
HETATM 2 O O1A FAD . . . J 2 23.792 -15.476 11.32 1 52.42 ? O1A FAD 600 B 1 
HETATM 3 O O2A FAD . . . J 2 21.725 -16.171 9.873 1 52.87 ? O2A FAD 600 B 1 
HETATM 4 O O5B FAD . . . J 2 22.226 -17.582 11.918 1 53.56 ? O5B FAD 600 B 1 
HETATM 5 C C5B FAD . . . J 2 23.221 -18.296 12.635 1 55.72 ? C5B FAD 600 B 1 
HETATM 6 C C4B FAD . . . J 2 22.672 -19.538 13.335 1 54.74 ? C4B FAD 600 B 1 
HETATM 7 O O4B FAD . . . J 2 21.473 -19.162 14.133 1 54.75 ? O4B FAD 600 B 1 
HETATM 8 C C3B FAD . . . J 2 22.082 -20.586 12.352 1 54.19 ? C3B FAD 600 B 1 
HETATM 9 O O3B FAD . . . J 2 23.059 -21.379 11.719 1 54.8 ? O3B FAD 600 B 1 
HETATM 10 C C2B FAD . . . J 2 21.109 -21.332 13.205 1 54.11 ? C2B FAD 600 B 1 
HETATM 11 O O2B FAD . . . J 2 21.61 -22.48 13.825 1 54.4 ? O2B FAD 600 B 1 
HETATM 12 C C1B FAD . . . J 2 20.62 -20.302 14.153 1 54.78 ? C1B FAD 600 B 1 
HETATM 13 N N9A FAD . . . J 2 19.256 -19.87 13.833 1 55.22 ? N9A FAD 600 B 1 
HETATM 14 C C8A FAD . . . J 2 18.879 -18.982 12.879 1 55.31 ? C8A FAD 600 B 1 
HETATM 15 N N7A FAD . . . J 2 17.433 -18.836 12.998 1 55.89 ? N7A FAD 600 B 1 
HETATM 16 C C5A FAD . . . J 2 16.991 -19.631 14.093 1 55.06 ? C5A FAD 600 B 1 
HETATM 17 C C6A FAD . . . J 2 15.662 -19.953 14.62 1 55.05 ? C6A FAD 600 B 1 
HETATM 18 N N6A FAD . . . J 2 14.485 -19.292 14.093 1 55.15 ? N6A FAD 600 B 1 
HETATM 19 N N1A FAD . . . J 2 15.529 -20.784 15.631 1 54.97 ? N1A FAD 600 B 1 
HETATM 20 C C2A FAD . . . J 2 16.657 -21.399 16.199 1 53.94 ? C2A FAD 600 B 1 
HETATM 21 N N3A FAD . . . J 2 17.954 -21.105 15.666 1 54.11 ? N3A FAD 600 B 1 
HETATM 22 C C4A FAD . . . J 2 18.089 -20.228 14.655 1 54.5 ? C4A FAD 600 B 1 
HETATM 23 N N1 FAD . . . J 2 25.324 -18.516 0.585 1 51.84 ? N1 FAD 600 B 1 
HETATM 24 C C2 FAD . . . J 2 24.9 -18.126 -0.668 1 53.08 ? C2 FAD 600 B 1 
HETATM 25 O O2 FAD . . . J 2 23.957 -17.106 -0.736 1 55.22 ? O2 FAD 600 B 1 
HETATM 26 N N3 FAD . . . J 2 25.407 -18.749 -1.872 1 52.74 ? N3 FAD 600 B 1 
HETATM 27 C C4 FAD . . . J 2 26.346 -19.766 -1.77 1 53.29 ? C4 FAD 600 B 1 
HETATM 28 O O4 FAD . . . J 2 26.895 -20.457 -2.895 1 54.73 ? O4 FAD 600 B 1 
HETATM 29 C C4X FAD . . . J 2 26.766 -20.137 -0.5 1 51.65 ? C4X FAD 600 B 1 
HETATM 30 N N5 FAD . . . J 2 27.748 -21.199 -0.424 1 51.5 ? N5 FAD 600 B 1 
HETATM 31 C C5X FAD . . . J 2 28.264 -21.642 0.881 1 49.49 ? C5X FAD 600 B 1 
HETATM 32 C C6 FAD . . . J 2 29.298 -22.718 0.944 1 48.98 ? C6 FAD 600 B 1 
HETATM 33 C C7 FAD . . . J 2 29.801 -23.145 2.258 1 48.46 ? C7 FAD 600 B 1 
HETATM 34 C C7M FAD . . . J 2 30.867 -24.278 2.28 1 50.3 ? C7M FAD 600 B 1 
HETATM 35 C C8 FAD . . . J 2 29.295 -22.514 3.467 1 48.18 ? C8 FAD 600 B 1 
HETATM 36 C C8M FAD . . . J 2 29.75 -22.887 4.884 1 49.63 ? C8M FAD 600 B 1 
HETATM 37 C C9 FAD . . . J 2 28.273 -21.449 3.386 1 47.72 ? C9 FAD 600 B 1 
HETATM 38 C C9A FAD . . . J 2 27.763 -21.021 2.069 1 48.89 ? C9A FAD 600 B 1 
HETATM 39 N N10 FAD . . . J 2 26.759 -19.948 2.001 1 48.68 ? N10 FAD 600 B 1 
HETATM 40 C C10 FAD . . . J 2 26.264 -19.513 0.683 1 50.18 ? C10 FAD 600 B 1 
HETATM 41 C C1' FAD . . . J 2 26.358 -19.414 3.334 1 47.55 ? C1' FAD 600 B 1 
HETATM 42 C C2' FAD . . . J 2 24.96 -19.75 3.943 1 46.33 ? C2' FAD 600 B 1 
HETATM 43 O O2' FAD . . . J 2 24.106 -20.364 3.39 1 45.25 ? O2' FAD 600 B 1 
HETATM 44 C C3' FAD . . . J 2 24.704 -19.206 5.366 1 46.08 ? C3' FAD 600 B 1 
HETATM 45 O O3' FAD . . . J 2 25.888 -19.2 6.115 1 44.79 ? O3' FAD 600 B 1 
HETATM 46 C C4' FAD . . . J 2 23.534 -19.882 6.12 1 46.42 ? C4' FAD 600 B 1 
HETATM 47 O O4' FAD . . . J 2 22.442 -20.148 5.301 1 47.66 ? O4' FAD 600 B 1 
HETATM 48 C C5' FAD . . . J 2 23.11 -18.901 7.231 1 47.97 ? C5' FAD 600 B 1 
HETATM 49 O O5' FAD . . . J 2 23.676 -17.627 7.052 1 47.3 ? O5' FAD 600 B 1 
HETATM 50 P P FAD . . . J 2 24.461 -16.976 8.337 1 48.94 ? P FAD 600 B 1 
HETATM 51 O O1P FAD . . . J 2 26.091 -17.292 8.37 1 48.15 ? O1P FAD 600 B 1 
HETATM 52 O O2P FAD . . . J 2 24.189 -15.54 8.249 1 50.76 ? O2P FAD 600 B 1 
HETATM 53 O O3P FAD . . . J 2 23.805 -17.615 9.725 1 51.33 ? O3P FAD 600 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#