data_2WCH # _model_server_result.job_id '_GHIuvb3AXp6ZVlUVxrSuQ' _model_server_result.datetime_utc '2024-10-21 03:37:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wch # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1145}' # _entry.id 2WCH # _exptl.entry_id 2WCH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 236.393 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (10E,12Z)-hexadeca-10,12-dienal _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2WCH _cell.length_a 33.08 _cell.length_b 33.08 _cell.length_c 172.381 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WCH _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 19 A CYS 19 1_555 A SG CYS 54 A CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 50 A CYS 50 1_555 A SG CYS 108 A CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? disulf ? disulf3 A SG CYS 97 A CYS 97 1_555 A SG CYS 117 A CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc1 A OE1 GLU 17 A GLU 17 4_555 D MG MG . A MG 1144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc2 A OE2 GLU 18 A GLU 18 1_555 D MG MG . A MG 1144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc3 A O GLU 22 A GLU 22 1_555 B MG MG . A MG 1142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc4 A O ASP 28 A ASP 28 4_655 B MG MG . A MG 1142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc5 A OD2 ASP 39 A ASP 39 1_665 C MG MG . A MG 1143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc6 A OD1 ASP 106 A ASP 106 1_555 C MG MG . A MG 1143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc7 B MG MG . A MG 1142 1_555 G O HOH . A HOH 2018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc8 B MG MG . A MG 1142 1_555 G O HOH . A HOH 2023 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc9 B MG MG . A MG 1142 1_555 G O HOH . A HOH 2029 4_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc10 C MG MG . A MG 1143 1_555 G O HOH . A HOH 2097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc11 C MG MG . A MG 1143 1_555 G O HOH . A HOH 2098 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc12 C MG MG . A MG 1143 1_555 G O HOH . A HOH 2114 1_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc13 C MG MG . A MG 1143 1_555 G O HOH . A HOH 2115 1_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc14 D MG MG . A MG 1144 1_555 G O HOH . A HOH 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc15 D MG MG . A MG 1144 1_555 G O HOH . A HOH 2010 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc16 F MG MG . A MG 1146 1_555 G O HOH . A HOH 2002 1_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc17 F MG MG . A MG 1146 1_555 G O HOH . A HOH 2003 1_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc18 F MG MG . A MG 1146 1_555 G O HOH . A HOH 2017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc19 F MG MG . A MG 1146 1_555 G O HOH . A HOH 2053 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc20 F MG MG . A MG 1146 1_555 G O HOH . A HOH 2058 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc21 F MG MG . A MG 1146 1_555 G O HOH . A HOH 2059 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? # _chem_comp.formula 'C16 H28 O' _chem_comp.formula_weight 236.393 _chem_comp.id B7M _chem_comp.mon_nstd_flag . _chem_comp.name (10E,12Z)-hexadeca-10,12-dienal _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C16 B7M doub 70 n n C16 C15 B7M sing 71 n n C15 C14 B7M sing 72 n n C14 C13 B7M sing 73 n n C13 C12 B7M sing 74 n n C12 C11 B7M sing 75 n n C11 C10 B7M sing 76 n n C10 C9 B7M sing 77 n n C9 C8 B7M sing 78 n n C8 C7 B7M sing 79 n n C7 C6 B7M doub 80 n n C6 C5 B7M sing 81 n n C5 C4 B7M doub 82 n n C4 C3 B7M sing 83 n n C3 C2 B7M sing 84 n n C2 C1 B7M sing 85 n n C15 H151 B7M sing 86 n n C15 H152 B7M sing 87 n n C14 H141 B7M sing 88 n n C14 H142 B7M sing 89 n n C13 H131 B7M sing 90 n n C13 H132 B7M sing 91 n n C12 H121 B7M sing 92 n n C12 H122 B7M sing 93 n n C11 H111 B7M sing 94 n n C11 H112 B7M sing 95 n n C10 H101 B7M sing 96 n n C10 H102 B7M sing 97 e n C9 H91C B7M sing 98 n n C9 H92C B7M sing 99 n n C8 H81C B7M sing 100 n n C8 H82C B7M sing 101 z n C7 H7 B7M sing 102 n n C6 H6 B7M sing 103 n n C5 H5 B7M sing 104 n n C4 H4 B7M sing 105 n n C3 H31C B7M sing 106 n n C3 H32C B7M sing 107 n n C2 H21C B7M sing 108 n n C2 H22C B7M sing 109 n n C1 H11C B7M sing 110 n n C1 H12C B7M sing 111 n n C1 H13C B7M sing 112 n n C16 HXT B7M sing 113 n n # _atom_sites.entry_id 2WCH _atom_sites.fract_transf_matrix[1][1] 0.03023 _atom_sites.fract_transf_matrix[1][2] 0.017453 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005801 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1142 1142 MG MG . C 2 MG A 1 1143 1143 MG MG . D 2 MG A 1 1144 1144 MG MG . E 3 B7M A 1 1145 1145 B7M B7M . F 2 MG A 1 1146 1146 MG MG . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . G 4 HOH A 16 2016 2016 HOH HOH . G 4 HOH A 17 2017 2017 HOH HOH . G 4 HOH A 18 2018 2018 HOH HOH . G 4 HOH A 19 2019 2019 HOH HOH . G 4 HOH A 20 2020 2020 HOH HOH . G 4 HOH A 21 2021 2021 HOH HOH . G 4 HOH A 22 2022 2022 HOH HOH . G 4 HOH A 23 2023 2023 HOH HOH . G 4 HOH A 24 2024 2024 HOH HOH . G 4 HOH A 25 2025 2025 HOH HOH . G 4 HOH A 26 2026 2026 HOH HOH . G 4 HOH A 27 2027 2027 HOH HOH . G 4 HOH A 28 2028 2028 HOH HOH . G 4 HOH A 29 2029 2029 HOH HOH . G 4 HOH A 30 2030 2030 HOH HOH . G 4 HOH A 31 2031 2031 HOH HOH . G 4 HOH A 32 2032 2032 HOH HOH . G 4 HOH A 33 2033 2033 HOH HOH . G 4 HOH A 34 2034 2034 HOH HOH . G 4 HOH A 35 2035 2035 HOH HOH . G 4 HOH A 36 2036 2036 HOH HOH . G 4 HOH A 37 2037 2037 HOH HOH . G 4 HOH A 38 2038 2038 HOH HOH . G 4 HOH A 39 2039 2039 HOH HOH . G 4 HOH A 40 2040 2040 HOH HOH . G 4 HOH A 41 2041 2041 HOH HOH . G 4 HOH A 42 2042 2042 HOH HOH . G 4 HOH A 43 2043 2043 HOH HOH . G 4 HOH A 44 2044 2044 HOH HOH . G 4 HOH A 45 2045 2045 HOH HOH . G 4 HOH A 46 2046 2046 HOH HOH . G 4 HOH A 47 2047 2047 HOH HOH . G 4 HOH A 48 2048 2048 HOH HOH . G 4 HOH A 49 2049 2049 HOH HOH . G 4 HOH A 50 2050 2050 HOH HOH . G 4 HOH A 51 2051 2051 HOH HOH . G 4 HOH A 52 2052 2052 HOH HOH . G 4 HOH A 53 2053 2053 HOH HOH . G 4 HOH A 54 2054 2054 HOH HOH . G 4 HOH A 55 2055 2055 HOH HOH . G 4 HOH A 56 2056 2056 HOH HOH . G 4 HOH A 57 2057 2057 HOH HOH . G 4 HOH A 58 2058 2058 HOH HOH . G 4 HOH A 59 2059 2059 HOH HOH . G 4 HOH A 60 2060 2060 HOH HOH . G 4 HOH A 61 2061 2061 HOH HOH . G 4 HOH A 62 2062 2062 HOH HOH . G 4 HOH A 63 2063 2063 HOH HOH . G 4 HOH A 64 2064 2064 HOH HOH . G 4 HOH A 65 2065 2065 HOH HOH . G 4 HOH A 66 2066 2066 HOH HOH . G 4 HOH A 67 2067 2067 HOH HOH . G 4 HOH A 68 2068 2068 HOH HOH . G 4 HOH A 69 2069 2069 HOH HOH . G 4 HOH A 70 2070 2070 HOH HOH . G 4 HOH A 71 2071 2071 HOH HOH . G 4 HOH A 72 2072 2072 HOH HOH . G 4 HOH A 73 2073 2073 HOH HOH . G 4 HOH A 74 2074 2074 HOH HOH . G 4 HOH A 75 2075 2075 HOH HOH . G 4 HOH A 76 2076 2076 HOH HOH . G 4 HOH A 77 2077 2077 HOH HOH . G 4 HOH A 78 2078 2078 HOH HOH . G 4 HOH A 79 2079 2079 HOH HOH . G 4 HOH A 80 2080 2080 HOH HOH . G 4 HOH A 81 2081 2081 HOH HOH . G 4 HOH A 82 2082 2082 HOH HOH . G 4 HOH A 83 2083 2083 HOH HOH . G 4 HOH A 84 2084 2084 HOH HOH . G 4 HOH A 85 2085 2085 HOH HOH . G 4 HOH A 86 2086 2086 HOH HOH . G 4 HOH A 87 2087 2087 HOH HOH . G 4 HOH A 88 2088 2088 HOH HOH . G 4 HOH A 89 2089 2089 HOH HOH . G 4 HOH A 90 2090 2090 HOH HOH . G 4 HOH A 91 2091 2091 HOH HOH . G 4 HOH A 92 2092 2092 HOH HOH . G 4 HOH A 93 2093 2093 HOH HOH . G 4 HOH A 94 2094 2094 HOH HOH . G 4 HOH A 95 2095 2095 HOH HOH . G 4 HOH A 96 2096 2096 HOH HOH . G 4 HOH A 97 2097 2097 HOH HOH . G 4 HOH A 98 2098 2098 HOH HOH . G 4 HOH A 99 2099 2099 HOH HOH . G 4 HOH A 100 2100 2100 HOH HOH . G 4 HOH A 101 2101 2101 HOH HOH . G 4 HOH A 102 2102 2102 HOH HOH . G 4 HOH A 103 2103 2103 HOH HOH . G 4 HOH A 104 2104 2104 HOH HOH . G 4 HOH A 105 2105 2105 HOH HOH . G 4 HOH A 106 2106 2106 HOH HOH . G 4 HOH A 107 2107 2107 HOH HOH . G 4 HOH A 108 2108 2108 HOH HOH . G 4 HOH A 109 2109 2109 HOH HOH . G 4 HOH A 110 2110 2110 HOH HOH . G 4 HOH A 111 2111 2111 HOH HOH . G 4 HOH A 112 2112 2112 HOH HOH . G 4 HOH A 113 2113 2113 HOH HOH . G 4 HOH A 114 2114 2114 HOH HOH . G 4 HOH A 115 2115 2115 HOH HOH . G 4 HOH A 116 2116 2116 HOH HOH . G 4 HOH A 117 2117 2117 HOH HOH . G 4 HOH A 118 2118 2118 HOH HOH . G 4 HOH A 119 2119 2119 HOH HOH . G 4 HOH A 120 2120 2120 HOH HOH . G 4 HOH A 121 2121 2121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O B7M . . . E 3 10.966 -3.088 18.394 1 35.95 ? O B7M 1145 A 1 HETATM 2 C C16 B7M . . . E 3 9.834 -3.609 18.281 1 36.29 ? C16 B7M 1145 A 1 HETATM 3 C C15 B7M . . . E 3 9.574 -4.597 17.148 1 34.51 ? C15 B7M 1145 A 1 HETATM 4 C C14 B7M . . . E 3 8.342 -5.478 17.346 1 32.37 ? C14 B7M 1145 A 1 HETATM 5 C C13 B7M . . . E 3 8.41 -6.714 16.444 1 34.58 ? C13 B7M 1145 A 1 HETATM 6 C C12 B7M . . . E 3 7.25 -6.846 15.459 1 37.64 ? C12 B7M 1145 A 1 HETATM 7 C C11 B7M . . . E 3 7.106 -8.228 14.836 1 35.08 ? C11 B7M 1145 A 1 HETATM 8 C C10 B7M . . . E 3 5.916 -8.326 13.876 1 37.48 ? C10 B7M 1145 A 1 HETATM 9 C C9 B7M . . . E 3 5.293 -9.718 13.894 1 37.07 ? C9 B7M 1145 A 1 HETATM 10 C C8 B7M . . . E 3 3.756 -9.838 13.839 1 35.89 ? C8 B7M 1145 A 1 HETATM 11 C C7 B7M . . . E 3 2.93 -8.575 14.064 1 36.01 ? C7 B7M 1145 A 1 HETATM 12 C C6 B7M . . . E 3 2.874 -8.014 15.279 1 37.16 ? C6 B7M 1145 A 1 HETATM 13 C C5 B7M . . . E 3 2.102 -6.814 15.586 1 37.4 ? C5 B7M 1145 A 1 HETATM 14 C C4 B7M . . . E 3 2.621 -5.59 15.71 1 39.53 ? C4 B7M 1145 A 1 HETATM 15 C C3 B7M . . . E 3 4.086 -5.277 15.525 1 39.11 ? C3 B7M 1145 A 1 HETATM 16 C C2 B7M . . . E 3 4.694 -4.804 16.83 1 41.91 ? C2 B7M 1145 A 1 HETATM 17 C C1 B7M . . . E 3 5.166 -3.366 16.726 1 39.81 ? C1 B7M 1145 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #