data_2WD9 # _model_server_result.job_id 36YiniiMR0jRPw6Zzsf1xA _model_server_result.datetime_utc '2024-11-16 19:42:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wd9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1570}' # _entry.id 2WD9 # _exptl.entry_id 2WD9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 206.281 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IBUPROFEN _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2WD9 _cell.length_a 98.32 _cell.length_b 98.32 _cell.length_c 381.44 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WD9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 PQS monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,I 1 1 B,E,F,J 2 1 C,G,H,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O MET 476 B MET 483 1_555 E MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc2 B O HIS 478 B HIS 485 1_555 E MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc3 C O MET 476 C MET 483 1_555 G MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc4 C O VAL 481 C VAL 488 1_555 G MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? # _chem_comp.formula 'C13 H18 O2' _chem_comp.formula_weight 206.281 _chem_comp.id IBP _chem_comp.mon_nstd_flag . _chem_comp.name IBUPROFEN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-(4-ISOBUTYLPHENYL)PROPIONIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 IBP sing 152 n n C1 O1 IBP sing 153 n n C1 O2 IBP doub 154 n n C2 C3 IBP sing 155 n n C2 C11 IBP sing 156 n n C2 H21 IBP sing 157 n n C2 H22 IBP sing 158 n n C3 C4 IBP sing 159 n n C3 C5 IBP sing 160 n n C3 H31 IBP sing 161 n n C4 H41 IBP sing 162 n n C4 H42 IBP sing 163 n n C4 H43 IBP sing 164 n n C5 H51 IBP sing 165 n n C5 H52 IBP sing 166 n n C5 H53 IBP sing 167 n n C6 C7 IBP sing 168 n n C6 C8 IBP sing 169 n n C6 H61 IBP sing 170 n n C7 H71 IBP sing 171 n n C7 H72 IBP sing 172 n n C7 H73 IBP sing 173 n n C8 C9 IBP doub 174 n y C8 C13 IBP sing 175 n y C9 C10 IBP sing 176 n y C9 H91 IBP sing 177 n n C10 C11 IBP doub 178 n y C10 H101 IBP sing 179 n n C11 C12 IBP sing 180 n y C12 C13 IBP doub 181 n y C12 H121 IBP sing 182 n n C13 H131 IBP sing 183 n n O1 HO1 IBP sing 184 n n # _atom_sites.entry_id 2WD9 _atom_sites.fract_transf_matrix[1][1] 0.010171 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 IBP A 1 1570 1570 IBP IBP . E 3 MG B 1 601 601 MG MG . F 2 IBP B 1 1570 1570 IBP IBP . G 3 MG C 1 601 601 MG MG . H 2 IBP C 1 1570 1570 IBP IBP . I 4 HOH A 1 2001 2001 HOH HOH . I 4 HOH A 2 2002 2002 HOH HOH . I 4 HOH A 3 2003 2003 HOH HOH . I 4 HOH A 4 2004 2004 HOH HOH . I 4 HOH A 5 2005 2005 HOH HOH . I 4 HOH A 6 2006 2006 HOH HOH . I 4 HOH A 7 2007 2007 HOH HOH . I 4 HOH A 8 2008 2008 HOH HOH . I 4 HOH A 9 2009 2009 HOH HOH . I 4 HOH A 10 2010 2010 HOH HOH . I 4 HOH A 11 2011 2011 HOH HOH . I 4 HOH A 12 2012 2012 HOH HOH . I 4 HOH A 13 2013 2013 HOH HOH . I 4 HOH A 14 2014 2014 HOH HOH . I 4 HOH A 15 2015 2015 HOH HOH . I 4 HOH A 16 2016 2016 HOH HOH . I 4 HOH A 17 2017 2017 HOH HOH . I 4 HOH A 18 2018 2018 HOH HOH . I 4 HOH A 19 2019 2019 HOH HOH . I 4 HOH A 20 2020 2020 HOH HOH . I 4 HOH A 21 2021 2021 HOH HOH . I 4 HOH A 22 2022 2022 HOH HOH . I 4 HOH A 23 2023 2023 HOH HOH . I 4 HOH A 24 2024 2024 HOH HOH . I 4 HOH A 25 2025 2025 HOH HOH . I 4 HOH A 26 2026 2026 HOH HOH . I 4 HOH A 27 2027 2027 HOH HOH . I 4 HOH A 28 2028 2028 HOH HOH . I 4 HOH A 29 2029 2029 HOH HOH . I 4 HOH A 30 2030 2030 HOH HOH . I 4 HOH A 31 2031 2031 HOH HOH . I 4 HOH A 32 2032 2032 HOH HOH . I 4 HOH A 33 2033 2033 HOH HOH . I 4 HOH A 34 2034 2034 HOH HOH . I 4 HOH A 35 2035 2035 HOH HOH . I 4 HOH A 36 2036 2036 HOH HOH . I 4 HOH A 37 2037 2037 HOH HOH . I 4 HOH A 38 2038 2038 HOH HOH . I 4 HOH A 39 2039 2039 HOH HOH . I 4 HOH A 40 2040 2040 HOH HOH . I 4 HOH A 41 2041 2041 HOH HOH . I 4 HOH A 42 2042 2042 HOH HOH . I 4 HOH A 43 2043 2043 HOH HOH . I 4 HOH A 44 2044 2044 HOH HOH . I 4 HOH A 45 2045 2045 HOH HOH . I 4 HOH A 46 2046 2046 HOH HOH . I 4 HOH A 47 2047 2047 HOH HOH . I 4 HOH A 48 2048 2048 HOH HOH . I 4 HOH A 49 2049 2049 HOH HOH . I 4 HOH A 50 2050 2050 HOH HOH . I 4 HOH A 51 2051 2051 HOH HOH . I 4 HOH A 52 2052 2052 HOH HOH . I 4 HOH A 53 2053 2053 HOH HOH . I 4 HOH A 54 2054 2054 HOH HOH . I 4 HOH A 55 2055 2055 HOH HOH . I 4 HOH A 56 2056 2056 HOH HOH . I 4 HOH A 57 2057 2057 HOH HOH . I 4 HOH A 58 2058 2058 HOH HOH . I 4 HOH A 59 2059 2059 HOH HOH . I 4 HOH A 60 2060 2060 HOH HOH . I 4 HOH A 61 2061 2061 HOH HOH . I 4 HOH A 62 2062 2062 HOH HOH . I 4 HOH A 63 2063 2063 HOH HOH . I 4 HOH A 64 2064 2064 HOH HOH . I 4 HOH A 65 2065 2065 HOH HOH . I 4 HOH A 66 2066 2066 HOH HOH . I 4 HOH A 67 2067 2067 HOH HOH . I 4 HOH A 68 2068 2068 HOH HOH . I 4 HOH A 69 2069 2069 HOH HOH . I 4 HOH A 70 2070 2070 HOH HOH . I 4 HOH A 71 2071 2071 HOH HOH . I 4 HOH A 72 2072 2072 HOH HOH . I 4 HOH A 73 2073 2073 HOH HOH . I 4 HOH A 74 2074 2074 HOH HOH . I 4 HOH A 75 2075 2075 HOH HOH . I 4 HOH A 76 2076 2076 HOH HOH . I 4 HOH A 77 2077 2077 HOH HOH . I 4 HOH A 78 2078 2078 HOH HOH . I 4 HOH A 79 2079 2079 HOH HOH . I 4 HOH A 80 2080 2080 HOH HOH . I 4 HOH A 81 2081 2081 HOH HOH . I 4 HOH A 82 2082 2082 HOH HOH . I 4 HOH A 83 2083 2083 HOH HOH . I 4 HOH A 84 2084 2084 HOH HOH . I 4 HOH A 85 2085 2085 HOH HOH . I 4 HOH A 86 2086 2086 HOH HOH . I 4 HOH A 87 2087 2087 HOH HOH . J 4 HOH B 1 2001 2001 HOH HOH . J 4 HOH B 2 2002 2002 HOH HOH . J 4 HOH B 3 2003 2003 HOH HOH . J 4 HOH B 4 2004 2004 HOH HOH . J 4 HOH B 5 2005 2005 HOH HOH . J 4 HOH B 6 2006 2006 HOH HOH . J 4 HOH B 7 2007 2007 HOH HOH . J 4 HOH B 8 2008 2008 HOH HOH . J 4 HOH B 9 2009 2009 HOH HOH . J 4 HOH B 10 2010 2010 HOH HOH . J 4 HOH B 11 2011 2011 HOH HOH . J 4 HOH B 12 2012 2012 HOH HOH . J 4 HOH B 13 2013 2013 HOH HOH . J 4 HOH B 14 2014 2014 HOH HOH . J 4 HOH B 15 2015 2015 HOH HOH . J 4 HOH B 16 2016 2016 HOH HOH . J 4 HOH B 17 2017 2017 HOH HOH . J 4 HOH B 18 2018 2018 HOH HOH . J 4 HOH B 19 2019 2019 HOH HOH . J 4 HOH B 20 2020 2020 HOH HOH . J 4 HOH B 21 2021 2021 HOH HOH . J 4 HOH B 22 2022 2022 HOH HOH . J 4 HOH B 23 2023 2023 HOH HOH . J 4 HOH B 24 2024 2024 HOH HOH . J 4 HOH B 25 2025 2025 HOH HOH . J 4 HOH B 26 2026 2026 HOH HOH . J 4 HOH B 27 2027 2027 HOH HOH . J 4 HOH B 28 2028 2028 HOH HOH . J 4 HOH B 29 2029 2029 HOH HOH . J 4 HOH B 30 2030 2030 HOH HOH . J 4 HOH B 31 2031 2031 HOH HOH . J 4 HOH B 32 2032 2032 HOH HOH . J 4 HOH B 33 2033 2033 HOH HOH . J 4 HOH B 34 2034 2034 HOH HOH . J 4 HOH B 35 2035 2035 HOH HOH . J 4 HOH B 36 2036 2036 HOH HOH . J 4 HOH B 37 2037 2037 HOH HOH . J 4 HOH B 38 2038 2038 HOH HOH . J 4 HOH B 39 2039 2039 HOH HOH . J 4 HOH B 40 2040 2040 HOH HOH . J 4 HOH B 41 2041 2041 HOH HOH . J 4 HOH B 42 2042 2042 HOH HOH . J 4 HOH B 43 2043 2043 HOH HOH . J 4 HOH B 44 2044 2044 HOH HOH . J 4 HOH B 45 2045 2045 HOH HOH . J 4 HOH B 46 2046 2046 HOH HOH . J 4 HOH B 47 2047 2047 HOH HOH . J 4 HOH B 48 2048 2048 HOH HOH . J 4 HOH B 49 2049 2049 HOH HOH . J 4 HOH B 50 2050 2050 HOH HOH . J 4 HOH B 51 2051 2051 HOH HOH . J 4 HOH B 52 2052 2052 HOH HOH . J 4 HOH B 53 2053 2053 HOH HOH . J 4 HOH B 54 2054 2054 HOH HOH . J 4 HOH B 55 2055 2055 HOH HOH . J 4 HOH B 56 2056 2056 HOH HOH . J 4 HOH B 57 2057 2057 HOH HOH . J 4 HOH B 58 2058 2058 HOH HOH . J 4 HOH B 59 2059 2059 HOH HOH . J 4 HOH B 60 2060 2060 HOH HOH . J 4 HOH B 61 2061 2061 HOH HOH . J 4 HOH B 62 2062 2062 HOH HOH . J 4 HOH B 63 2063 2063 HOH HOH . J 4 HOH B 64 2064 2064 HOH HOH . J 4 HOH B 65 2065 2065 HOH HOH . J 4 HOH B 66 2066 2066 HOH HOH . J 4 HOH B 67 2067 2067 HOH HOH . J 4 HOH B 68 2068 2068 HOH HOH . J 4 HOH B 69 2069 2069 HOH HOH . J 4 HOH B 70 2070 2070 HOH HOH . J 4 HOH B 71 2071 2071 HOH HOH . J 4 HOH B 72 2072 2072 HOH HOH . J 4 HOH B 73 2073 2073 HOH HOH . J 4 HOH B 74 2074 2074 HOH HOH . J 4 HOH B 75 2075 2075 HOH HOH . J 4 HOH B 76 2076 2076 HOH HOH . J 4 HOH B 77 2077 2077 HOH HOH . J 4 HOH B 78 2078 2078 HOH HOH . J 4 HOH B 79 2079 2079 HOH HOH . J 4 HOH B 80 2080 2080 HOH HOH . J 4 HOH B 81 2081 2081 HOH HOH . J 4 HOH B 82 2082 2082 HOH HOH . J 4 HOH B 83 2083 2083 HOH HOH . J 4 HOH B 84 2084 2084 HOH HOH . J 4 HOH B 85 2085 2085 HOH HOH . J 4 HOH B 86 2086 2086 HOH HOH . J 4 HOH B 87 2087 2087 HOH HOH . K 4 HOH C 1 2001 2001 HOH HOH . K 4 HOH C 2 2002 2002 HOH HOH . K 4 HOH C 3 2003 2003 HOH HOH . K 4 HOH C 4 2004 2004 HOH HOH . K 4 HOH C 5 2005 2005 HOH HOH . K 4 HOH C 6 2006 2006 HOH HOH . K 4 HOH C 7 2007 2007 HOH HOH . K 4 HOH C 8 2008 2008 HOH HOH . K 4 HOH C 9 2009 2009 HOH HOH . K 4 HOH C 10 2010 2010 HOH HOH . K 4 HOH C 11 2011 2011 HOH HOH . K 4 HOH C 12 2012 2012 HOH HOH . K 4 HOH C 13 2013 2013 HOH HOH . K 4 HOH C 14 2014 2014 HOH HOH . K 4 HOH C 15 2015 2015 HOH HOH . K 4 HOH C 16 2016 2016 HOH HOH . K 4 HOH C 17 2017 2017 HOH HOH . K 4 HOH C 18 2018 2018 HOH HOH . K 4 HOH C 19 2019 2019 HOH HOH . K 4 HOH C 20 2020 2020 HOH HOH . K 4 HOH C 21 2021 2021 HOH HOH . K 4 HOH C 22 2022 2022 HOH HOH . K 4 HOH C 23 2023 2023 HOH HOH . K 4 HOH C 24 2024 2024 HOH HOH . K 4 HOH C 25 2025 2025 HOH HOH . K 4 HOH C 26 2026 2026 HOH HOH . K 4 HOH C 27 2027 2027 HOH HOH . K 4 HOH C 28 2028 2028 HOH HOH . K 4 HOH C 29 2029 2029 HOH HOH . K 4 HOH C 30 2030 2030 HOH HOH . K 4 HOH C 31 2031 2031 HOH HOH . K 4 HOH C 32 2032 2032 HOH HOH . K 4 HOH C 33 2033 2033 HOH HOH . K 4 HOH C 34 2034 2034 HOH HOH . K 4 HOH C 35 2035 2035 HOH HOH . K 4 HOH C 36 2036 2036 HOH HOH . K 4 HOH C 37 2037 2037 HOH HOH . K 4 HOH C 38 2038 2038 HOH HOH . K 4 HOH C 39 2039 2039 HOH HOH . K 4 HOH C 40 2040 2040 HOH HOH . K 4 HOH C 41 2041 2041 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IBP . . . D 2 14.874 17.932 29.357 1 24.07 ? C1 IBP 1570 A 1 HETATM 2 C C2 IBP . . . D 2 14.091 18.494 22.834 1 22.6 ? C2 IBP 1570 A 1 HETATM 3 C C3 IBP . . . D 2 15.337 18.107 22.028 1 24.01 ? C3 IBP 1570 A 1 HETATM 4 C C4 IBP . . . D 2 16.589 18.882 22.421 1 17.32 ? C4 IBP 1570 A 1 HETATM 5 C C5 IBP . . . D 2 15.031 18.318 20.54 1 24.39 ? C5 IBP 1570 A 1 HETATM 6 C C6 IBP . . . D 2 15.039 19.166 28.5 1 15.25 ? C6 IBP 1570 A 1 HETATM 7 C C7 IBP . . . D 2 16.447 19.703 28.675 1 9.44 ? C7 IBP 1570 A 1 HETATM 8 C C8 IBP . . . D 2 14.799 18.926 27.049 1 9.65 ? C8 IBP 1570 A 1 HETATM 9 C C9 IBP . . . D 2 14.506 20.024 26.266 1 15.83 ? C9 IBP 1570 A 1 HETATM 10 C C10 IBP . . . D 2 14.273 19.899 24.912 1 14.09 ? C10 IBP 1570 A 1 HETATM 11 C C11 IBP . . . D 2 14.346 18.648 24.32 1 20.84 ? C11 IBP 1570 A 1 HETATM 12 C C12 IBP . . . D 2 14.631 17.539 25.102 1 17.64 ? C12 IBP 1570 A 1 HETATM 13 C C13 IBP . . . D 2 14.854 17.681 26.459 1 8.14 ? C13 IBP 1570 A 1 HETATM 14 O O1 IBP . . . D 2 15.913 17.365 29.787 1 25.67 ? O1 IBP 1570 A 1 HETATM 15 O O2 IBP . . . D 2 13.698 17.521 29.588 1 23.84 ? O2 IBP 1570 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #