data_2WEQ
#
_model_server_result.job_id            A1-wwmvrv4YqGVkHFnXuFg 
_model_server_result.datetime_utc      '2024-11-16 07:47:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2weq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1215}' 
#
_entry.id    2WEQ 
#
_exptl.entry_id    2WEQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              560.636 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GELDANAMYCIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2WEQ 
_cell.length_a            74.608 
_cell.length_b            74.608 
_cell.length_c            110.9 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2WEQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        95 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C29 H40 N2 O9' 
_chem_comp.formula_weight    560.636 
_chem_comp.id                GDM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GELDANAMYCIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 GDM doub 70 n n 
O2 C6 GDM sing 71 n n 
O2 C23 GDM sing 72 n n 
O3 C7 GDM sing 73 n n 
O3 C24 GDM sing 74 n n 
O4 C24 GDM doub 75 n n 
O5 C11 GDM sing 76 n n 
O5 HO5 GDM sing 77 n n 
O6 C12 GDM sing 78 n n 
O6 C27 GDM sing 79 n n 
O7 C17 GDM sing 80 n n 
O7 C29 GDM sing 81 n n 
O8 C18 GDM doub 82 n n 
O9 C21 GDM doub 83 n n 
N1 C1 GDM sing 84 n n 
N1 C20 GDM sing 85 n n 
N1 HN1 GDM sing 86 n n 
N2 C24 GDM sing 87 n n 
N2 HN21 GDM sing 88 n n 
N2 HN22 GDM sing 89 n n 
C1 C2 GDM sing 90 n n 
C2 C3 GDM doub 91 e n 
C2 C22 GDM sing 92 n n 
C3 C4 GDM sing 93 n n 
C3 H3 GDM sing 94 n n 
C4 C5 GDM doub 95 z n 
C4 H4 GDM sing 96 n n 
C5 C6 GDM sing 97 n n 
C5 H5 GDM sing 98 n n 
C6 C7 GDM sing 99 n n 
C6 H6 GDM sing 100 n n 
C7 C8 GDM sing 101 n n 
C7 H7 GDM sing 102 n n 
C8 C9 GDM doub 103 e n 
C8 C25 GDM sing 104 n n 
C9 C10 GDM sing 105 n n 
C9 H9 GDM sing 106 n n 
C10 C11 GDM sing 107 n n 
C10 C26 GDM sing 108 n n 
C10 H10 GDM sing 109 n n 
C11 C12 GDM sing 110 n n 
C11 H11 GDM sing 111 n n 
C12 C13 GDM sing 112 n n 
C12 H12 GDM sing 113 n n 
C13 C14 GDM sing 114 n n 
C13 H131 GDM sing 115 n n 
C13 H132 GDM sing 116 n n 
C14 C15 GDM sing 117 n n 
C14 C28 GDM sing 118 n n 
C14 H14 GDM sing 119 n n 
C15 C16 GDM sing 120 n n 
C15 H151 GDM sing 121 n n 
C15 H152 GDM sing 122 n n 
C16 C17 GDM doub 123 n n 
C16 C21 GDM sing 124 n n 
C17 C18 GDM sing 125 n n 
C18 C19 GDM sing 126 n n 
C19 C20 GDM doub 127 n n 
C19 H19 GDM sing 128 n n 
C20 C21 GDM sing 129 n n 
C22 H221 GDM sing 130 n n 
C22 H222 GDM sing 131 n n 
C22 H223 GDM sing 132 n n 
C23 H231 GDM sing 133 n n 
C23 H232 GDM sing 134 n n 
C23 H233 GDM sing 135 n n 
C25 H251 GDM sing 136 n n 
C25 H252 GDM sing 137 n n 
C25 H253 GDM sing 138 n n 
C26 H261 GDM sing 139 n n 
C26 H262 GDM sing 140 n n 
C26 H263 GDM sing 141 n n 
C27 H271 GDM sing 142 n n 
C27 H272 GDM sing 143 n n 
C27 H273 GDM sing 144 n n 
C28 H281 GDM sing 145 n n 
C28 H282 GDM sing 146 n n 
C28 H283 GDM sing 147 n n 
C29 H291 GDM sing 148 n n 
C29 H292 GDM sing 149 n n 
C29 H293 GDM sing 150 n n 
#
_atom_sites.entry_id                     2WEQ 
_atom_sites.fract_transf_matrix[1][1]    0.013403 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013403 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009017 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GDM A 1 1215 1215 GDM GDM . 
C 3 GOL A 1 1216 1216 GOL GOL . 
D 3 GOL A 1 1217 1217 GOL GOL . 
E 4 HOH A 1 2001 2001 HOH HOH . 
E 4 HOH A 2 2002 2002 HOH HOH . 
E 4 HOH A 3 2003 2003 HOH HOH . 
E 4 HOH A 4 2004 2004 HOH HOH . 
E 4 HOH A 5 2005 2005 HOH HOH . 
E 4 HOH A 6 2006 2006 HOH HOH . 
E 4 HOH A 7 2007 2007 HOH HOH . 
E 4 HOH A 8 2008 2008 HOH HOH . 
E 4 HOH A 9 2009 2009 HOH HOH . 
E 4 HOH A 10 2010 2010 HOH HOH . 
E 4 HOH A 11 2011 2011 HOH HOH . 
E 4 HOH A 12 2012 2012 HOH HOH . 
E 4 HOH A 13 2013 2013 HOH HOH . 
E 4 HOH A 14 2014 2014 HOH HOH . 
E 4 HOH A 15 2015 2015 HOH HOH . 
E 4 HOH A 16 2016 2016 HOH HOH . 
E 4 HOH A 17 2017 2017 HOH HOH . 
E 4 HOH A 18 2018 2018 HOH HOH . 
E 4 HOH A 19 2019 2019 HOH HOH . 
E 4 HOH A 20 2020 2020 HOH HOH . 
E 4 HOH A 21 2021 2021 HOH HOH . 
E 4 HOH A 22 2022 2022 HOH HOH . 
E 4 HOH A 23 2023 2023 HOH HOH . 
E 4 HOH A 24 2024 2024 HOH HOH . 
E 4 HOH A 25 2025 2025 HOH HOH . 
E 4 HOH A 26 2026 2026 HOH HOH . 
E 4 HOH A 27 2027 2027 HOH HOH . 
E 4 HOH A 28 2028 2028 HOH HOH . 
E 4 HOH A 29 2029 2029 HOH HOH . 
E 4 HOH A 30 2030 2030 HOH HOH . 
E 4 HOH A 31 2031 2031 HOH HOH . 
E 4 HOH A 32 2032 2032 HOH HOH . 
E 4 HOH A 33 2033 2033 HOH HOH . 
E 4 HOH A 34 2034 2034 HOH HOH . 
E 4 HOH A 35 2035 2035 HOH HOH . 
E 4 HOH A 36 2036 2036 HOH HOH . 
E 4 HOH A 37 2037 2037 HOH HOH . 
E 4 HOH A 38 2038 2038 HOH HOH . 
E 4 HOH A 39 2039 2039 HOH HOH . 
E 4 HOH A 40 2040 2040 HOH HOH . 
E 4 HOH A 41 2041 2041 HOH HOH . 
E 4 HOH A 42 2042 2042 HOH HOH . 
E 4 HOH A 43 2043 2043 HOH HOH . 
E 4 HOH A 44 2044 2044 HOH HOH . 
E 4 HOH A 45 2045 2045 HOH HOH . 
E 4 HOH A 46 2046 2046 HOH HOH . 
E 4 HOH A 47 2047 2047 HOH HOH . 
E 4 HOH A 48 2048 2048 HOH HOH . 
E 4 HOH A 49 2049 2049 HOH HOH . 
E 4 HOH A 50 2050 2050 HOH HOH . 
E 4 HOH A 51 2051 2051 HOH HOH . 
E 4 HOH A 52 2052 2052 HOH HOH . 
E 4 HOH A 53 2053 2053 HOH HOH . 
E 4 HOH A 54 2054 2054 HOH HOH . 
E 4 HOH A 55 2055 2055 HOH HOH . 
E 4 HOH A 56 2056 2056 HOH HOH . 
E 4 HOH A 57 2057 2057 HOH HOH . 
E 4 HOH A 58 2058 2058 HOH HOH . 
E 4 HOH A 59 2059 2059 HOH HOH . 
E 4 HOH A 60 2060 2060 HOH HOH . 
E 4 HOH A 61 2061 2061 HOH HOH . 
E 4 HOH A 62 2062 2062 HOH HOH . 
E 4 HOH A 63 2063 2063 HOH HOH . 
E 4 HOH A 64 2064 2064 HOH HOH . 
E 4 HOH A 65 2065 2065 HOH HOH . 
E 4 HOH A 66 2066 2066 HOH HOH . 
E 4 HOH A 67 2067 2067 HOH HOH . 
E 4 HOH A 68 2068 2068 HOH HOH . 
E 4 HOH A 69 2069 2069 HOH HOH . 
E 4 HOH A 70 2070 2070 HOH HOH . 
E 4 HOH A 71 2071 2071 HOH HOH . 
E 4 HOH A 72 2072 2072 HOH HOH . 
E 4 HOH A 73 2073 2073 HOH HOH . 
E 4 HOH A 74 2074 2074 HOH HOH . 
E 4 HOH A 75 2075 2075 HOH HOH . 
E 4 HOH A 76 2076 2076 HOH HOH . 
E 4 HOH A 77 2077 2077 HOH HOH . 
E 4 HOH A 78 2078 2078 HOH HOH . 
E 4 HOH A 79 2079 2079 HOH HOH . 
E 4 HOH A 80 2080 2080 HOH HOH . 
E 4 HOH A 81 2081 2081 HOH HOH . 
E 4 HOH A 82 2082 2082 HOH HOH . 
E 4 HOH A 83 2083 2083 HOH HOH . 
E 4 HOH A 84 2084 2084 HOH HOH . 
E 4 HOH A 85 2085 2085 HOH HOH . 
E 4 HOH A 86 2086 2086 HOH HOH . 
E 4 HOH A 87 2087 2087 HOH HOH . 
E 4 HOH A 88 2088 2088 HOH HOH . 
E 4 HOH A 89 2089 2089 HOH HOH . 
E 4 HOH A 90 2090 2090 HOH HOH . 
E 4 HOH A 91 2091 2091 HOH HOH . 
E 4 HOH A 92 2092 2092 HOH HOH . 
E 4 HOH A 93 2093 2093 HOH HOH . 
E 4 HOH A 94 2094 2094 HOH HOH . 
E 4 HOH A 95 2095 2095 HOH HOH . 
E 4 HOH A 96 2096 2096 HOH HOH . 
E 4 HOH A 97 2097 2097 HOH HOH . 
E 4 HOH A 98 2098 2098 HOH HOH . 
E 4 HOH A 99 2099 2099 HOH HOH . 
E 4 HOH A 100 2100 2100 HOH HOH . 
E 4 HOH A 101 2101 2101 HOH HOH . 
E 4 HOH A 102 2102 2102 HOH HOH . 
E 4 HOH A 103 2103 2103 HOH HOH . 
E 4 HOH A 104 2104 2104 HOH HOH . 
E 4 HOH A 105 2105 2105 HOH HOH . 
E 4 HOH A 106 2106 2106 HOH HOH . 
E 4 HOH A 107 2107 2107 HOH HOH . 
E 4 HOH A 108 2108 2108 HOH HOH . 
E 4 HOH A 109 2109 2109 HOH HOH . 
E 4 HOH A 110 2110 2110 HOH HOH . 
E 4 HOH A 111 2111 2111 HOH HOH . 
E 4 HOH A 112 2112 2112 HOH HOH . 
E 4 HOH A 113 2113 2113 HOH HOH . 
E 4 HOH A 114 2114 2114 HOH HOH . 
E 4 HOH A 115 2115 2115 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 GDM . . . B 2 -25.506 33.239 0.027 1 39.4 ? O1 GDM 1215 A 1 
HETATM 2 O O2 GDM . . . B 2 -19.212 34.476 -2.163 1 51.52 ? O2 GDM 1215 A 1 
HETATM 3 O O3 GDM . . . B 2 -19.015 33.021 -4.415 1 35.28 ? O3 GDM 1215 A 1 
HETATM 4 O O4 GDM . . . B 2 -17.392 33.976 -5.57 1 32.5 ? O4 GDM 1215 A 1 
HETATM 5 O O5 GDM . . . B 2 -22.307 36.51 -9.387 1 39.71 ? O5 GDM 1215 A 1 
HETATM 6 O O6 GDM . . . B 2 -22.871 38.538 -7.51 1 44.13 ? O6 GDM 1215 A 1 
HETATM 7 O O7 GDM . . . B 2 -24.92 33.505 -7.695 1 49.69 ? O7 GDM 1215 A 1 
HETATM 8 O O8 GDM . . . B 2 -24.049 31.036 -6.388 1 49.2 ? O8 GDM 1215 A 1 
HETATM 9 O O9 GDM . . . B 2 -26.684 35.242 -3.322 1 51.68 ? O9 GDM 1215 A 1 
HETATM 10 N N1 GDM . . . B 2 -25.899 32.951 -1.992 1 38.6 ? N1 GDM 1215 A 1 
HETATM 11 N N2 GDM . . . B 2 -16.978 31.853 -4.746 1 28.79 ? N2 GDM 1215 A 1 
HETATM 12 C C1 GDM . . . B 2 -25.804 33.903 -0.923 1 41.24 ? C1 GDM 1215 A 1 
HETATM 13 C C2 GDM . . . B 2 -25.034 35.251 -1.024 1 40.76 ? C2 GDM 1215 A 1 
HETATM 14 C C3 GDM . . . B 2 -23.828 34.663 -1.764 1 38.19 ? C3 GDM 1215 A 1 
HETATM 15 C C4 GDM . . . B 2 -22.698 35.537 -2.179 1 40.94 ? C4 GDM 1215 A 1 
HETATM 16 C C5 GDM . . . B 2 -21.306 35.295 -2.669 1 41.8 ? C5 GDM 1215 A 1 
HETATM 17 C C6 GDM . . . B 2 -20.374 34.135 -2.889 1 42.92 ? C6 GDM 1215 A 1 
HETATM 18 C C7 GDM . . . B 2 -19.893 34.085 -4.355 1 37.25 ? C7 GDM 1215 A 1 
HETATM 19 C C8 GDM . . . B 2 -20.935 34.069 -5.478 1 34.69 ? C8 GDM 1215 A 1 
HETATM 20 C C9 GDM . . . B 2 -20.556 35.224 -6.403 1 31.85 ? C9 GDM 1215 A 1 
HETATM 21 C C10 GDM . . . B 2 -21.101 35.251 -7.835 1 36.49 ? C10 GDM 1215 A 1 
HETATM 22 C C11 GDM . . . B 2 -21.652 36.655 -8.148 1 37.06 ? C11 GDM 1215 A 1 
HETATM 23 C C12 GDM . . . B 2 -22.669 37.2 -7.093 1 39.69 ? C12 GDM 1215 A 1 
HETATM 24 C C13 GDM . . . B 2 -24.035 36.472 -7.214 1 37.22 ? C13 GDM 1215 A 1 
HETATM 25 C C14 GDM . . . B 2 -25.18 36.905 -6.277 1 38.45 ? C14 GDM 1215 A 1 
HETATM 26 C C15 GDM . . . B 2 -26.286 35.837 -6.196 1 41.62 ? C15 GDM 1215 A 1 
HETATM 27 C C16 GDM . . . B 2 -25.834 34.5 -5.565 1 45.19 ? C16 GDM 1215 A 1 
HETATM 28 C C17 GDM . . . B 2 -25.139 33.351 -6.345 1 45.47 ? C17 GDM 1215 A 1 
HETATM 29 C C18 GDM . . . B 2 -24.68 32.052 -5.661 1 45.73 ? C18 GDM 1215 A 1 
HETATM 30 C C19 GDM . . . B 2 -24.903 31.852 -4.153 1 42.17 ? C19 GDM 1215 A 1 
HETATM 31 C C20 GDM . . . B 2 -25.64 32.955 -3.405 1 42.92 ? C20 GDM 1215 A 1 
HETATM 32 C C21 GDM . . . B 2 -26.065 34.258 -4.086 1 45.26 ? C21 GDM 1215 A 1 
HETATM 33 C C22 GDM . . . B 2 -24.626 35.939 0.296 1 44.62 ? C22 GDM 1215 A 1 
HETATM 34 C C23 GDM . . . B 2 -19.24 34.678 -0.786 1 54.23 ? C23 GDM 1215 A 1 
HETATM 35 C C24 GDM . . . B 2 -17.699 33.107 -4.815 1 34.08 ? C24 GDM 1215 A 1 
HETATM 36 C C25 GDM . . . B 2 -21.223 32.706 -6.153 1 31.4 ? C25 GDM 1215 A 1 
HETATM 37 C C26 GDM . . . B 2 -19.932 34.997 -8.838 1 35.43 ? C26 GDM 1215 A 1 
HETATM 38 C C27 GDM . . . B 2 -21.981 39.591 -7.152 1 42.16 ? C27 GDM 1215 A 1 
HETATM 39 C C28 GDM . . . B 2 -24.633 37.229 -4.876 1 39.04 ? C28 GDM 1215 A 1 
HETATM 40 C C29 GDM . . . B 2 -26.086 33.6 -8.504 1 57.23 ? C29 GDM 1215 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           40 
#