data_2WFX # _model_server_result.job_id ib15r1qis1SIogGa1Bw7NQ _model_server_result.datetime_utc '2024-12-21 12:09:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wfx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1669}' # _entry.id 2WFX # _exptl.entry_id 2WFX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2WFX _cell.length_a 89.15 _cell.length_b 89.15 _cell.length_c 171.429 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WFX _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 3 B CYS 216 1_555 B SG CYS 323 B CYS 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 189 B CYS 402 1_555 B SG CYS 411 B CYS 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 222 B CYS 435 1_555 B SG CYS 239 B CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 287 B CYS 500 1_555 B SG CYS 381 B CYS 594 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 B SG CYS 395 B CYS 608 1_555 B SG CYS 404 B CYS 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 399 B CYS 612 1_555 B SG CYS 410 B CYS 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 B SG CYS 412 B CYS 625 1_555 B SG CYS 421 B CYS 634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 B SG CYS 426 B CYS 639 1_555 B SG CYS 436 B CYS 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 B SG CYS 430 B CYS 643 1_555 B SG CYS 442 B CYS 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 B SG CYS 444 B CYS 657 1_555 B SG CYS 453 B CYS 666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OE2 GLU 51 A GLU 90 1_555 D CA CA . A CA 1193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc2 A OE1 GLU 51 A GLU 90 1_555 D CA CA . A CA 1193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc3 A OE1 GLU 52 A GLU 91 1_555 D CA CA . A CA 1193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc4 A OE2 GLU 52 A GLU 91 1_555 D CA CA . A CA 1193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? metalc ? metalc5 A OE1 GLU 52 A GLU 91 1_555 E CA CA . A CA 1194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc6 A OD1 ASP 57 A ASP 96 1_555 D CA CA . A CA 1193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc7 A OD2 ASP 57 A ASP 96 1_555 D CA CA . A CA 1193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc8 A O THR 87 A THR 126 1_555 D CA CA . A CA 1193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc9 A OE1 GLU 88 A GLU 127 1_555 D CA CA . A CA 1193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc10 A OE2 GLU 88 A GLU 127 1_555 E CA CA . A CA 1194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc11 A OD1 ASP 91 A ASP 130 1_555 E CA CA . A CA 1194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc12 A NE2 HIS 102 A HIS 141 1_555 C ZN ZN . A ZN 1192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc13 A OD1 ASP 109 A ASP 148 1_555 C ZN ZN . A ZN 1192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc14 A ND1 HIS 144 A HIS 183 1_555 C ZN ZN . A ZN 1192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc15 C ZN ZN . A ZN 1192 1_555 B OD2 ASP 170 B ASP 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc16 C ZN ZN . A ZN 1192 1_555 B OD1 ASP 170 B ASP 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc17 B O GLY 141 B GLY 354 1_555 I CA CA . B CA 1670 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.085 ? metalc ? metalc18 B O ARG 197 B ARG 410 1_555 G NA NA . B NA 1668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc19 B O ASN 199 B ASN 412 1_555 G NA NA . B NA 1668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc20 B O PRO 228 B PRO 441 1_555 H NA NA . B NA 1669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc21 B O ASP 230 B ASP 443 1_555 H NA NA . B NA 1669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc22 B O ILE 233 B ILE 446 1_555 H NA NA . B NA 1669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc23 B OD1 ASP 260 B ASP 473 1_555 G NA NA . B NA 1668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc24 B O TYR 261 B TYR 474 1_555 G NA NA . B NA 1668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc25 B OE1 GLU 262 B GLU 475 1_555 G NA NA . B NA 1668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2WFX _atom_sites.fract_transf_matrix[1][1] 0.011217 _atom_sites.fract_transf_matrix[1][2] 0.006476 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012952 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005833 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 1192 1192 ZN ZN . D 4 CA A 1 1193 1193 CA CA . E 4 CA A 1 1194 1194 CA CA . F 5 NA B 1 1667 1667 NA NA . G 5 NA B 1 1668 1668 NA NA . H 5 NA B 1 1669 1669 NA NA . I 4 CA B 1 1670 1670 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 5 _atom_site.Cartn_x -1.777 _atom_site.Cartn_y 33.092 _atom_site.Cartn_z 36.927 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1669 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #