data_2WGF # _model_server_result.job_id zUNoY4skReeuTxPIxksVMg _model_server_result.datetime_utc '2024-11-06 00:11:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wgf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":1417}' # _entry.id 2WGF # _exptl.entry_id 2WGF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2WGF _cell.length_a 151.505 _cell.length_b 151.505 _cell.length_c 147.839 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WGF _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K,L,M,Y,Z 1 1 C,D,N,O,P,Q,R,AA,BA 2 1 E,F,S,T,U,V,CA,DA 3 1 G,H,W,X,EA,FA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 K N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 S N N ? 3 U N N # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 253 n n O1 HO1 PG4 sing 254 n n C1 C2 PG4 sing 255 n n C1 H11 PG4 sing 256 n n C1 H12 PG4 sing 257 n n C2 O2 PG4 sing 258 n n C2 H21 PG4 sing 259 n n C2 H22 PG4 sing 260 n n O2 C3 PG4 sing 261 n n C3 C4 PG4 sing 262 n n C3 H31 PG4 sing 263 n n C3 H32 PG4 sing 264 n n C4 O3 PG4 sing 265 n n C4 H41 PG4 sing 266 n n C4 H42 PG4 sing 267 n n O3 C5 PG4 sing 268 n n C5 C6 PG4 sing 269 n n C5 H51 PG4 sing 270 n n C5 H52 PG4 sing 271 n n C6 O4 PG4 sing 272 n n C6 H61 PG4 sing 273 n n C6 H62 PG4 sing 274 n n O4 C7 PG4 sing 275 n n C7 C8 PG4 sing 276 n n C7 H71 PG4 sing 277 n n C7 H72 PG4 sing 278 n n C8 O5 PG4 sing 279 n n C8 H81 PG4 sing 280 n n C8 H82 PG4 sing 281 n n O5 HO5 PG4 sing 282 n n # _atom_sites.entry_id 2WGF _atom_sites.fract_transf_matrix[1][1] 0.0066 _atom_sites.fract_transf_matrix[1][2] 0.003811 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007622 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NA A 1 1417 1417 NA NA . J 3 PG4 A 1 1418 1418 PG4 PG4 . K 3 PG4 B 1 1417 1417 PG4 PG4 . L 3 PG4 B 1 1418 1418 PG4 PG4 . M 2 NA B 1 1419 1419 NA NA . N 3 PG4 C 1 1417 1417 PG4 PG4 . O 2 NA C 1 1418 1418 NA NA . P 3 PG4 D 1 1417 1417 PG4 PG4 . Q 4 PEG D 1 1418 1418 PEG PEG . R 2 NA D 1 1419 1419 NA NA . S 3 PG4 E 1 1417 1417 PG4 PG4 . T 2 NA E 1 1418 1418 NA NA . U 3 PG4 F 1 1417 1417 PG4 PG4 . V 2 NA F 1 1418 1418 NA NA . W 2 NA G 1 1417 1417 NA NA . X 2 NA H 1 1417 1417 NA NA . Y 5 HOH A 1 2001 2001 HOH HOH . Y 5 HOH A 2 2002 2002 HOH HOH . Y 5 HOH A 3 2003 2003 HOH HOH . Y 5 HOH A 4 2004 2004 HOH HOH . Z 5 HOH B 1 2001 2001 HOH HOH . Z 5 HOH B 2 2002 2002 HOH HOH . Z 5 HOH B 3 2003 2003 HOH HOH . AA 5 HOH C 1 2001 2001 HOH HOH . AA 5 HOH C 2 2002 2002 HOH HOH . AA 5 HOH C 3 2003 2003 HOH HOH . AA 5 HOH C 4 2004 2004 HOH HOH . AA 5 HOH C 5 2005 2005 HOH HOH . AA 5 HOH C 6 2006 2006 HOH HOH . AA 5 HOH C 7 2007 2007 HOH HOH . BA 5 HOH D 1 2001 2001 HOH HOH . BA 5 HOH D 2 2002 2002 HOH HOH . BA 5 HOH D 3 2003 2003 HOH HOH . BA 5 HOH D 4 2004 2004 HOH HOH . BA 5 HOH D 5 2005 2005 HOH HOH . BA 5 HOH D 6 2006 2006 HOH HOH . BA 5 HOH D 7 2007 2007 HOH HOH . CA 5 HOH E 1 2001 2001 HOH HOH . CA 5 HOH E 2 2002 2002 HOH HOH . DA 5 HOH F 1 2001 2001 HOH HOH . DA 5 HOH F 2 2002 2002 HOH HOH . DA 5 HOH F 3 2003 2003 HOH HOH . DA 5 HOH F 4 2004 2004 HOH HOH . EA 5 HOH G 1 2001 2001 HOH HOH . EA 5 HOH G 2 2002 2002 HOH HOH . EA 5 HOH G 3 2003 2003 HOH HOH . FA 5 HOH H 1 2001 2001 HOH HOH . FA 5 HOH H 2 2002 2002 HOH HOH . FA 5 HOH H 3 2003 2003 HOH HOH . FA 5 HOH H 4 2004 2004 HOH HOH . FA 5 HOH H 5 2005 2005 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . S 3 -39.967 38.161 -54.083 1 62 ? O1 PG4 1417 E 1 HETATM 2 C C1 PG4 . . . S 3 -38.566 37.841 -54.052 1 60.17 ? C1 PG4 1417 E 1 HETATM 3 C C2 PG4 . . . S 3 -37.749 38.896 -54.794 1 56.59 ? C2 PG4 1417 E 1 HETATM 4 O O2 PG4 . . . S 3 -36.351 38.59 -54.714 1 61.19 ? O2 PG4 1417 E 1 HETATM 5 C C3 PG4 . . . S 3 -35.609 39.373 -55.657 1 63.92 ? C3 PG4 1417 E 1 HETATM 6 C C4 PG4 . . . S 3 -34.231 38.774 -55.93 1 61.15 ? C4 PG4 1417 E 1 HETATM 7 O O3 PG4 . . . S 3 -33.485 39.677 -56.757 1 64.26 ? O3 PG4 1417 E 1 HETATM 8 C C5 PG4 . . . S 3 -33.035 39.054 -57.966 1 60.58 ? C5 PG4 1417 E 1 HETATM 9 C C6 PG4 . . . S 3 -31.812 39.782 -58.516 1 58.87 ? C6 PG4 1417 E 1 HETATM 10 O O4 PG4 . . . S 3 -31.507 39.293 -59.826 1 61.61 ? O4 PG4 1417 E 1 HETATM 11 C C7 PG4 . . . S 3 -31.026 37.949 -59.757 1 56.66 ? C7 PG4 1417 E 1 HETATM 12 C C8 PG4 . . . S 3 -29.549 37.873 -60.104 1 53.75 ? C8 PG4 1417 E 1 HETATM 13 O O5 PG4 . . . S 3 -29.044 36.594 -59.703 1 54.44 ? O5 PG4 1417 E 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 24 _model_server_stats.element_count 13 #