data_2WGF # _model_server_result.job_id Xd8YHKz1s8pQ2hUCjs4rlg _model_server_result.datetime_utc '2024-11-22 22:04:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wgf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":1417}' # _entry.id 2WGF # _exptl.entry_id 2WGF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2WGF _cell.length_a 151.505 _cell.length_b 151.505 _cell.length_c 147.839 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WGF _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K,L,M,Y,Z 1 1 C,D,N,O,P,Q,R,AA,BA 2 1 E,F,S,T,U,V,CA,DA 3 1 G,H,W,X,EA,FA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 M N N ? 2 O N N ? 2 R N N ? 2 T N N ? 2 V N N ? 2 W N N ? 2 X N N # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2WGF _atom_sites.fract_transf_matrix[1][1] 0.0066 _atom_sites.fract_transf_matrix[1][2] 0.003811 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007622 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NA A 1 1417 1417 NA NA . J 3 PG4 A 1 1418 1418 PG4 PG4 . K 3 PG4 B 1 1417 1417 PG4 PG4 . L 3 PG4 B 1 1418 1418 PG4 PG4 . M 2 NA B 1 1419 1419 NA NA . N 3 PG4 C 1 1417 1417 PG4 PG4 . O 2 NA C 1 1418 1418 NA NA . P 3 PG4 D 1 1417 1417 PG4 PG4 . Q 4 PEG D 1 1418 1418 PEG PEG . R 2 NA D 1 1419 1419 NA NA . S 3 PG4 E 1 1417 1417 PG4 PG4 . T 2 NA E 1 1418 1418 NA NA . U 3 PG4 F 1 1417 1417 PG4 PG4 . V 2 NA F 1 1418 1418 NA NA . W 2 NA G 1 1417 1417 NA NA . X 2 NA H 1 1417 1417 NA NA . Y 5 HOH A 1 2001 2001 HOH HOH . Y 5 HOH A 2 2002 2002 HOH HOH . Y 5 HOH A 3 2003 2003 HOH HOH . Y 5 HOH A 4 2004 2004 HOH HOH . Z 5 HOH B 1 2001 2001 HOH HOH . Z 5 HOH B 2 2002 2002 HOH HOH . Z 5 HOH B 3 2003 2003 HOH HOH . AA 5 HOH C 1 2001 2001 HOH HOH . AA 5 HOH C 2 2002 2002 HOH HOH . AA 5 HOH C 3 2003 2003 HOH HOH . AA 5 HOH C 4 2004 2004 HOH HOH . AA 5 HOH C 5 2005 2005 HOH HOH . AA 5 HOH C 6 2006 2006 HOH HOH . AA 5 HOH C 7 2007 2007 HOH HOH . BA 5 HOH D 1 2001 2001 HOH HOH . BA 5 HOH D 2 2002 2002 HOH HOH . BA 5 HOH D 3 2003 2003 HOH HOH . BA 5 HOH D 4 2004 2004 HOH HOH . BA 5 HOH D 5 2005 2005 HOH HOH . BA 5 HOH D 6 2006 2006 HOH HOH . BA 5 HOH D 7 2007 2007 HOH HOH . CA 5 HOH E 1 2001 2001 HOH HOH . CA 5 HOH E 2 2002 2002 HOH HOH . DA 5 HOH F 1 2001 2001 HOH HOH . DA 5 HOH F 2 2002 2002 HOH HOH . DA 5 HOH F 3 2003 2003 HOH HOH . DA 5 HOH F 4 2004 2004 HOH HOH . EA 5 HOH G 1 2001 2001 HOH HOH . EA 5 HOH G 2 2002 2002 HOH HOH . EA 5 HOH G 3 2003 2003 HOH HOH . FA 5 HOH H 1 2001 2001 HOH HOH . FA 5 HOH H 2 2002 2002 HOH HOH . FA 5 HOH H 3 2003 2003 HOH HOH . FA 5 HOH H 4 2004 2004 HOH HOH . FA 5 HOH H 5 2005 2005 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id X _atom_site.label_entity_id 2 _atom_site.Cartn_x 13.823 _atom_site.Cartn_y 83.764 _atom_site.Cartn_z -70.059 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.61 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1417 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #